ID JN381821; SV 1; circular; genomic DNA; STD; VRL; 2684 BP. XX AC JN381821; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U3 clone 1 segment DNA_A, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2684 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2684 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; 6f7eba91ffcf6cbc53f56367a458159c. XX FH Key Location/Qualifiers FH FT source 1..2684 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_A" FT /host="tomato" FT /strain="B" FT /isolate="U3" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="1" FT /db_xref="taxon:1162280" FT gene 274..1020 FT /gene="AV1" FT CDS 274..1020 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /db_xref="GOA:H8ZPL3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H8ZPL3" FT /protein_id="AFD62683.1" FT /translation="MPKRDGSWRSIAGTSKVRRSLNFSPRGGIGPKASAWVNRPMYRKP FT RIYRAYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVLCISDVTRGSGITHRVGKRFCVK FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY FT MACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1017..1415) FT /gene="AC3" FT CDS complement(1017..1415) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:H8ZPN9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZPN9" FT /protein_id="AFD62684.1" FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITKVEDPLYTNNRIY FT HVQIRFNHNLRRALDLHKAFLNFQVWTTSLTASGPIYLNRFRHLVLLYLDQLGVISINN FT VIRAVRYATDRSYVNAVLEDHSIKFKIY" FT gene complement(1162..1551) FT /gene="AC2" FT CDS complement(1162..1551) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:H8ZPP0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8ZPP0" FT /protein_id="AFD62685.1" FT /translation="MRNSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSIYVHIDCRN FT NGFTHRGTHHCASSREWRVYLGDNKSPVFQDNQSGGSTLHQQPDLPRPDTVQPQPEESV FT GSPQGISQLPSLDDFTDSFWADIFK" FT gene complement(1472..2542) FT /gene="AC1" FT CDS complement(1472..2542) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:H8ZPP1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8ZPP1" FT /protein_id="AFD62686.1" FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQALPWSIVKPTY FT VRVAREEHSDGHPHLHCLIQLSGKSNIKDARFFDIAHPRRSANFHPNVQAAKDTNAVKN FT YITKEGDFCESGQYRVSGSTKANKDDVYHNAVNAGGVAEALEIIRAGDPKTFIVNYHNV FT KANIERLFQKAPEQWTPPFPLSSFTNIPDEMQLWADDYFGRGSAARPDRPISIIVEGDS FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDITPQYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENSSLRGWTIRNAKFIFLTSA FT LYQGSTQGSQAQGNSP" FT gene complement(2068..2463) FT /gene="AC4" FT CDS complement(2068..2463) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:H8ZPP2" FT /protein_id="AFD62687.1" FT /translation="MKLFKCFKPFHGQSSSQHMSESQERNTPTDIPISIVSSSYPESRT FT SRMLDFSTLLTPEGLPIFTQMSRQPKTPTPSRITSPKRVIFVNPDNTGYLGAQRPIKTT FT FTTTPSMPEELQRLLRLLEPEIPRRSL" XX SQ Sequence 2684 BP; 645 A; 578 C; 679 G; 782 T; 0 other; actggatggc cgcccgattt ttggtgtctg ctttaatttg aacgaggagc gtcttttgat 60 ggacccacgc ggtcaagcgt gttttcggcg caattacgtg tgggccctgc taatgctccc 120 tcaaagctaa gttatttcga aagacttggt gggtaagttt gtaaatttgt ataagttgag 180 cccacatgta acgatcaaat cagtcttgtt gagagactgt gcatgattgt gtggagtgga 240 tactttatgt ttgaatttga tttgtaattc aaaatgccta agcgggatgg ctcatggcgt 300 tcaattgcgg gtacgtctaa ggttaggcgc tccctcaatt tctcgccccg tggaggtatt 360 gggcctaagg catctgcttg ggttaatagg cccatgtaca ggaagcccag gatatatcgg 420 gcctacaggt cgcctgacgt tcctaaaggt tgtgaggggc cgtgtaaggt ccagtcatat 480 gagcagcgcc atgacattgc gcataccggg aaggtgctct gcatatccga cgtgacgcgc 540 ggcagcggca tcactcatcg tgtgggtaag cgtttttgtg ttaagtctgt ctatatctta 600 ggtaaggtat ggatggatga caacatcaag ctgaggaacc acacgaacaa tgtgatgttc 660 tggctggtta gagaccggag accctatggc acgcctatgg atttcggaca ggtgtttaat 720 ctgttcgata acgagcccag taccgccacc gtgaagaacg atctccgcga tcgtttccaa 780 gtgatgcaca aattccacac cacggtcacc ggtgggcaat atgctgccaa ggaacaggcg 840 atggttaagc gtttctggag ggtcaacaac catgtgacct ataaccatca ggaagccgcg 900 aagtacgaga accacacgga gaacgccctg ctattgtata tggcatgtac tcatgcttct 960 aatcctgtgt atgcaactct taagattcgg atatattttt acgattcgat atcaaattaa 1020 taaattttga attttattga atgatcttcg agtacagcat ttacatacga tctgtctgtt 1080 gcgtaacgaa cagctctaat tacattgtta atggaaataa cgcctaactg atctaagtac 1140 aacaagacta aatgtctaaa cctatttaaa tatatcggcc cagaagctgt cagtgaagtc 1200 gtccagactt ggaagttgag aaatgccttg tggagatcca acgctctcct caggttgtgg 1260 ttgaaccgta tctggacgtg gtagatccgg ttgttggtgt agagtggatc ctccactttg 1320 gttatcttga aatacagggg atttgttatc tcccagatat acacgccact ctctgcttga 1380 ggcgcagtga tgagttcccc tgtgcgtgaa tccattattg cggcagtcta tgtggacgta 1440 tatcgagcac ccacagtgta agtcaatgcg tctacggcga attgccctgc gcttggctgc 1500 cctgtgtgct accttgatag agggcagatg tgaggaagat gaatttcgca ttgcgtattg 1560 tccagcctct tagtgatgag ttttcctctt tgtcgaggaa atctttatag ctagctccct 1620 ctcctggatt gcaaagcacg attgatggta tacctccttt aatttgaacc ggcttaccgt 1680 acttgcagtt gctttgccag tccttctggg ccccaatcaa ttctttccag tgctttagct 1740 ttaggtattg cggagtgatg tcatcaatga cgttatactc tgcttcgttt gagtaaaccc 1800 tagaattgaa atctaggtgt ccgctcaggt aattgtgtga acctaaagca cgggcccaca 1860 tcgtcttccc tgttcgacta tcaccttcga cgatgatact aataggtcta tctggccgcg 1920 cagcggaacc tctcccaaaa taatcgtccg cccacagttg catctcgtcg ggaatgttag 1980 tgaatgatga gaggggaaac ggaggagtcc attgttccgg agccttttga aataggcgtt 2040 caatgttagc cttgacgtta tgatagttta caatgaacgt cttgggatct ccggctctaa 2100 taatctcaag agcctctgca actcctccgg cattgacggc gttgtggtaa acgtcgtctt 2160 tattggcctt tgtgctccca gataccctgt attgtccgga ttcacaaaaa tcaccctctt 2220 tggtgatgta attcttgacg gcgttggtgt ctttggctgc ctggacattt gggtgaaaat 2280 tggcagacct tctggggtga gcaatgtcga aaaatctagc atccttgatg ttcgactttc 2340 cggatagctg gatgagacaa tggagatggg gatgtccgtc ggagtgttcc tctcttgcga 2400 ctcggacata tgttggcttg acgattgacc atggaagggc ttgaagcatt tgaagagctt 2460 catcttttgg tatatcgcac tggggatatg tgaggaagat gtttttggca gcaagtctaa 2520 attggttagg atttcgtggc atattggtaa atatggatga ggacaccagc tctggctctc 2580 actaaaacct attgttgttg gtgtcctggt gtcctatata tactacaagt ctctaagagc 2640 ctcttgagga caccaggggc aaaagcggcc atccatataa tatt 2684 //