ID JN381819; SV 1; circular; genomic DNA; STD; VRL; 2685 BP. XX AC JN381819; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U2 clone 1 segment DNA_A, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2685 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2685 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; 2853bc6b8611e7efc49cfb5af52d9ca4. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_A" FT /host="tomato" FT /strain="A" FT /isolate="U2" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="1" FT /db_xref="taxon:1162280" FT gene 275..1021 FT /gene="AV1" FT CDS 275..1021 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /db_xref="GOA:H8ZPN1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H8ZPN1" FT /protein_id="AFD62676.1" FT /translation="MPKRDGSWRSIAGTSKVRRSLNFSPRGGIGPKASAWVNRPMYRKP FT SIYRAYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVLCISDVTRGSGITHRVGKRFCVK FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY FT MACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1018..1416) FT /gene="AC3" FT CDS complement(1018..1416) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:H8ZPN2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZPN2" FT /protein_id="AFD62677.1" FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITRVEDPLYTNNRIY FT HVQIRFNHNLRRALDLHKAFLNFQVWTTSVTASGPIYLNRFTHFVLLYLDQLGVISINN FT VIRAVRFATDRSYVNAVLERHSIKFKIY" FT gene complement(1163..1552) FT /gene="AC2" FT CDS complement(1163..1552) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:H8ZPN3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8ZPN3" FT /protein_id="AFD62678.1" FT /translation="MRDSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSVYVHINCRN FT NGFTHRGTHHCASSREWRVYLGDNKSPVFQDNQSGGSTLHQQQDLPRPDTVQPQPEESV FT GSPQGISQLPSLDDFSDSFWADIFK" FT gene complement(1473..2543) FT /gene="AC1" FT CDS complement(1473..2543) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:H8ZPN4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8ZPN4" FT /protein_id="AFD62679.1" FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKDEALQMLQALPWSVVKPTY FT VRVAREEHSDGHPHLHCLIQLSGKSNIKDARFFDLTHPRRSANFHPNVQAAKDTNAVKN FT YITKEGDYCESGQYQVSGGTKSNKDDVYHNAVNARGASEALAIIKAGDPKTFIVSYHNV FT KANIERLFQKAPEPWSPPFPLSSFNNVPDDMQEWADEYFGRGSAARPERPISIIVEGDS FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDVAPHYLKLKHWKELIGAQRD FT WQSNCKYGKPVQIKGGIPAIVLCNSGEGASYKDFLDKEENSSLRTWTLRNARFIFLTSP FT LYQGSTQGSQAQGYST" FT gene complement(2099..2464) FT /gene="AC4" FT CDS complement(2099..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:H8ZPN5" FT /protein_id="AFD62680.1" FT /translation="MKLFKCFKPFHGQSSNPHMSESQERNTQTDIPTFIVSSSYPESLT FT SRMLDFSTLLTPEGLPIFTQMSRQPKTPTPSRITSPKRVIIVNPANIKCLGVQSQIKMT FT SITTPSMQEELQKLLLL" XX SQ Sequence 2685 BP; 656 A; 576 C; 674 G; 779 T; 0 other; actggatggc cgcccgattt ttggtgtcct gctttatttt gaatgaggag cgtcttttga 60 tggacccacg cggtcaagcg tgatttcggc gcaattacgt gtgggccctg agaatgcaca 120 ctcaaagcta agttattttg aaagacttgg ggggtaagtt tgtaaatttg tataagttga 180 gcccacatgt aacaatgaag tcagtcttgt tgcgagactg tgcatgattg ggtggagtgt 240 atactttatg tctatatttg atttgtaatt caaaatgccg aagcgggatg gctcatggcg 300 ttcgattgcg ggtacgtcta aggttaggcg ctctctcaat ttctcgcctc gtggaggtat 360 tgggcctaag gcctctgctt gggttaatag gcccatgtac aggaagccca gtatttatcg 420 ggcctatagg tcacctgacg ttcctaaagg ttgtgagggg ccttgtaagg tgcagtctta 480 tgagcagcgc catgacatcg cccataccgg gaaggttctg tgtatctccg acgtgacgcg 540 cggtagcggc atcactcacc gtgtcggtaa gcgtttttgt gtgaagtctg tctatatatt 600 aggtaaggtc tggatggacg ataacataaa gctgaggaac cacacgaaca acgtcatgtt 660 ctggttggtt agagaccgta gaccctatgg cacgcctatg gatttcggac aggtgtttaa 720 tctgttcgat aatgagccta gtaccgccac cgtgaagaac gatctccgcg atcgtttcca 780 agtgatgcac aagttccaca ccacggtcac cggtgggcaa tatgctgcca aggagcaggc 840 gatggttaag cgtttctgga gggtcaacaa ccatgtgacc tataaccacc aggaagccgc 900 gaagtacgag aaccacacgg agaatgcctt gttattgtat atggcatgta ctcatgcctc 960 taatcctgta tatgcaaccc ttaagattcg gatctatttt tacgattcga tatcaaatta 1020 ataaattttg aattttattg aatgacgttc gagtacagca tttacatatg atctgtctgt 1080 tgcgaaacga acagctctaa ttacattgtt aattgaaata acgcctaact gatctagata 1140 caacaaaaca aaatgtgtaa acctatttaa atatatcggc ccagaagctg tcactgaagt 1200 cgtccagact tggaagttga gaaatgcctt gtggagatcc aacgctctcc tcaggttgtg 1260 gttgaaccgt atctggacgt ggtagatcct gttgttggtg tagagtggat cctccactct 1320 ggttatcttg aaatacaggg gatttgttat ctcccagata tacacgccac tctctgcttg 1380 aggcgcagtg atgagttccc ctgtgcgtga atccattgtt gcggcagttt atgtggacat 1440 atactgagca cccacagtgt aggtcaatgc gcctacgtcg aatagccctg cgcttggctg 1500 ccctgtgtgc taccttgata gaggggagat gtgaggaaga tgaatctcgc attgcggagt 1560 gtccaggttc ttaatgatga gttttcctct ttgtcgagga aatctttata actggccccc 1620 tctccagaat tgcaaagcac gattgctggt atacctcctt taatttgaac tggcttaccg 1680 tacttgcaat tgctttgcca gtccctctgg gccccaatta attctttcca gtgctttagc 1740 tttagatagt gcggggcgac gtcatcaatg acgttatact ccgcctcgtt cgagtaaacc 1800 ctagaattga aatctaggtg tccgctcaag taattgtgtg aacctaaagc acgggcccac 1860 atcgtcttcc ctgtacgact atcgccctcg acgatgatac taataggtcg ctcaggccgc 1920 gcagcggaac ctctcccgaa atattcgtcc gcccattctt gcatatcgtc aggaacgtta 1980 ttgaacgagg agaggggaaa cggaggagac catggttctg gagccttctg aaacaaacgt 2040 tcgatattag ccttgacatt atgatagcta acaatgaatg tcttagggtc tccggctttt 2100 ataatagcaa gagcttctga agctcctctt gcattgacgg cgttgtgata gacgtcatct 2160 ttatttgact ttgtaccccc agacacttga tattggccgg attcacaata atcaccctct 2220 ttggtgatgt aattcttgac ggcgttggtg tctttggctg cctggacatt tgggtgaaaa 2280 ttggcagacc ttctggggtg agtaaggtcg aaaaatctag catccttgat gttagacttt 2340 ccggataact ggatgagaca atgaaggtgg ggatgtccgt ctgagtgttc ctctcttgcg 2400 actcggacat atgtgggttt gacgactgac catggaaggg cttgaagcat ttgaagagct 2460 tcatcctttg gtatatcgca ctggggatat gtgaggaaga tgtttttggc agcaagtcta 2520 aattggttag gatttcgtgg catatttgta aatatgtttg aggacaccag agatggctct 2580 caacttctct gctatttgct ggtgtcctgg tgtcccattt atactacaag tctctaaaag 2640 cctcttgagg acaccagggg caaaagcggc catccatata atatt 2685 //