Dbfetch
ID JN381814; SV 1; circular; genomic DNA; STD; VRL; 2620 BP. XX AC JN381814; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U1 clone 3 segment DNA_B, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2620 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2620 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; cf810891b04698d9512c81562d58db6c. XX FH Key Location/Qualifiers FH FT source 1..2620 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_B" FT /host="tomato" FT /isolate="U1" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="3" FT /db_xref="taxon:1162280" FT gene 490..1260 FT /gene="BV1" FT CDS 490..1260 FT /codon_start=1 FT /gene="BV1" FT /product="NSP" FT /db_xref="GOA:H8ZPL8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:H8ZPL8" FT /protein_id="AFD62663.1" FT /translation="MYTTRYRRGRFSTQGRVYSRYPLSKRSYYVKRTECKRRSSKVTHA FT DEDKKMSVQRLHENQFGAGFAMAHNTAMSTYITFPTLGITEPNRSRSYIKLKRLRYKGT FT VKIERVHVDVNMDVAAPKIEGVFSLVVVVDRKPHLNETGSLHSFDEIFGARINSHGNLA FT IAPVFKDRYYIRHVLKRVLSVEKDSMMVDLEGSMSLSNRRFNCWSTFKDLDRDSCNGVY FT ANISKNALLVYYYWMSDNASNASTFVSYDLDYVG" FT gene complement(1365..2246) FT /gene="BC1" FT CDS complement(1365..2246) FT /codon_start=1 FT /gene="BC1" FT /product="MP" FT /db_xref="GOA:H8ZPM8" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:H8ZPM8" FT /protein_id="AFD62664.1" FT /translation="MESQLVHPPNAFNYIESQRDEYQLSHDQTEIKLQFPSTTSQLSAR FT LSRSCMKIDHSVIEYRQQVPINATGTVVVELHDTRITHNESLQASWTFPIRCSIDLHYF FT SSSFFSLKDPIPWKLYYRVCDTNVHQGTHFAKIKGKLRLSTAKHSVDIPFRAPTVKILS FT KQFTEKDIDFSHVGYGRWERKLIRSASTTRYGLPGPIEIRPGESWATRSSIGHTQSDAE FT SDAGDAIHPYRHLNRLGTTILDPGESASIVGAHKTQSNITMSITQLNDLVRSTVQECIN FT SNCTPSQPKSLK" XX SQ Sequence 2620 BP; 691 A; 469 C; 642 G; 818 T; 0 other; actggatggc cgcccgattt tggtgtccta tgctatggtg gccccacacg ctttggtgga 60 ggagtttaca aaaatgtccc tggtgtcccg agtaagttcc caaaataccc ctggtgtccc 120 gaaaaatagt tgagcgcatt tttgacgtcc gtgaaatgag ctgaatgtac gtttgggttc 180 cgtggactga gtcaacaaga aattcaaatt aaagtggagc tatgtttgtc tagccaatca 240 tttcgcgagt gtgaagcctc tttattcatt acaatagtgc gtggggtata tgtgtcagaa 300 catagttggt cgtcactcca atgtttaatt attgtgttta tattgtacta ttggttatat 360 tacgtggacc atttgaacat gtggcactgt gtctaattat tggacatgac atgctatgac 420 ttgtgtatat ataattggta ttaattgagt tggatatcat gtctagctat atttgttgta 480 tattgaaaca tgtatactac gagatataga cgtggcaggt tctctacaca aggacgagtt 540 tactcgcgct atcccttatc caagcgttct tactatgtga aacggacgga gtgtaagcgt 600 cgctcgagta aggtgactca tgctgatgaa gacaagaaga tgtcagtcca gcggctacat 660 gagaatcagt tcggtgctgg ttttgctatg gctcataata cagcgatgtc cacgtacatc 720 accttcccaa ctcttggtat aaccgaacct aaccgttcaa ggtcatacat caagttgaaa 780 cgcttacgtt acaagggtac tgtaaagatt gagcgtgttc atgttgatgt gaatatggac 840 gttgcagctc caaaaattga aggagtcttt tctttggttg tggtggttga tcgaaagccg 900 catttgaacg aaactgggag tttgcattca ttcgacgaaa tattcggtgc gaggattaat 960 agtcatggta atttagccat agctcctgtg tttaaagatc gttattacat acgtcatgtg 1020 ctaaaacgag tgctatcagt ggagaaggat agcatgatgg tcgatctgga gggaagcatg 1080 tccttatcca accggcgttt caactgttgg tctacgttta aggatttgga tagggattca 1140 tgtaatgggg tttatgccaa tataagcaaa aacgccctat tagtttatta ttattggatg 1200 tcggataacg cgtcgaatgc gtcgacgttt gtatcatatg atcttgatta tgtgggttga 1260 ataaattgta ttattgagtg tccaatttgt atatgctgtt ttgtaagtaa ctaaaatttg 1320 attaataact acttgtgcat aaatacatgt taacaacaaa tttattattt caacgatttg 1380 ggttgtgagg gagtacagtt tgagttgata cattcttgga ctgtggaccg gacaaggtcg 1440 tttaactggg ttattgacat ggtgatgttg gactgtgtct tatgagcacc cactattgac 1500 gcagactcgc ctgggtctaa gatggtggtt cctaacctat tgagatgtct atatgggtgt 1560 atcgcgtccc ctgcgtccga ttccgcatca gattgggtat ggccgatgct gctcctggta 1620 gcccaagact ccccgggcct tatttctatt gggcctggaa gcccatatct tgttgtggat 1680 gcggatcgga tcaatttcct ctcccatcga ccataaccga cgtgtgagaa atcaatgtct 1740 ttctctgtga actgtttgga caatatctta accgtcggtg cccggaaagg gatatcaacg 1800 gagtgtttag ccgtcgatag tctgagtttc cccttgatct tcgcaaagtg agtcccctga 1860 tgaacgttgg tgtcacaaac cctgtaatat agtttccatg gaattgggtc tttgagcgag 1920 aagaatgagg atgagaaata atggagatct atgctgcacc ggataggaaa tgtccaagac 1980 gcttgtaagg attcgttgtg tgtgatcctc gtgtcatgga gctcgactac cactgtccct 2040 gtggcgttta ttggtacttg ctgcctgtat tctatgacgc tatggtcgat cttcatacag 2100 ctgcgactga gtctggcact gagttgagac gtcgtggacg gaaactgcaa cttaatctca 2160 gtttggtcat gtgataattg atattcatca cgctgagatt ctatataatt aaaggcgttt 2220 ggtggatgca ctaactgaga ttccattggt aaatctggcc gcgcagcgga aacgtctagg 2280 ttaatgaatt gactaagaga tgatgttagg gctaacgaat tgacgaagag aaaacgctga 2340 gaaattgaat tgagtaagag aaatttctcg gaatcagaac tgaagatgga aaaagttaaa 2400 tgaattgtgt gttgtgttat attgtttatg aatatgagtg tttggctttc ttaaatagac 2460 acatgaactt gaagaatgag gaaatgatga tgaaagtacg gaggacaccg gctctcgttc 2520 tccaaaagtc tcatattatg tggtgtcctg gtgtcccttt taaaccctct tgaatcctct 2580 tgaattctct aggggcaaaa gcggccatcc atataatatt 2620 //