ID JN381813; SV 1; circular; genomic DNA; STD; VRL; 2685 BP. XX AC JN381813; XX DT 21-MAR-2012 (Rel. 112, Created) DT 05-JUN-2012 (Rel. 113, Last updated, Version 2) XX DE Tomato rugose yellow leaf curl virus isolate U1 clone 1 segment DNA_A, DE complete sequence. XX KW . XX OS Tomato rugose yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2685 RX PUBMED; 22383056. RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., RA Teresa Federici M., Vincelli P., Navas-Castillo J., Moriones E.; RT "Diverse population of a new bipartite begomovirus infecting tomato crops RT in Uruguay"; RL Arch. Virol. 157(6):1137-1142(2012). XX RN [2] RP 1-2685 RA Marquez-Martin B., Maeso D., Martinez-Ayala A., Bernal R., Federici M.T., RA Vincelli P., Navas-Castillo J., Moriones E.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Virology, Inst. Hortofruticultura Subtropical y Mediterranea 'La Mayora' RL (IHSM-CSIC), Algarrobo Costa s/n., Algarrobo Costa, Malaga 29760, Spain XX DR MD5; 258460d329724ebf7526e982c68327d8. XX FH Key Location/Qualifiers FH FT source 1..2685 FT /organism="Tomato rugose yellow leaf curl virus" FT /segment="DNA_A" FT /host="tomato" FT /strain="A" FT /isolate="U1" FT /mol_type="genomic DNA" FT /country="Uruguay:Salto Grande" FT /collection_date="2009" FT /identified_by="B. Marquez-Martin" FT /clone="1" FT /db_xref="taxon:1162280" FT gene 275..1021 FT /gene="AV1" FT CDS 275..1021 FT /codon_start=1 FT /gene="AV1" FT /product="CP" FT /db_xref="GOA:H8ZPL3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H8ZPL3" FT /protein_id="AFD62658.1" FT /translation="MPKRDGSWRSIAGTSKVRRSLNFSPRGGIGPKASAWVNRPMYRKP FT RIYRAYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVLCISDVTRGSGITHRVGKRFCVK FT SVYILGKVWMDDNIKLRNHTNNVMFWLVRDRRPYGTPMDFGQVFNLFDNEPSTATVKND FT LRDRFQVMHKFHTTVTGGQYAAKEQAMVKRFWRVNNHVTYNHQEAAKYENHTENALLLY FT MACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1018..1416) FT /gene="AC3" FT CDS complement(1018..1416) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /db_xref="GOA:H8ZPL4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZPL4" FT /protein_id="AFD62659.1" FT /translation="MDSRTGELITAPQAESGVYIWEITNPLYFKITRVEDPLYTNNRIY FT HVQIRFNHNLRRALDLHKAFLNFQVWTTSVTASGPIYLNRFRHFVLLYLDQLGVISINN FT VIRAVRFATDRSYVNAVLEDHSIKYNIY" FT gene complement(1163..1552) FT /gene="AC2" FT CDS complement(1163..1552) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /db_xref="GOA:H8ZPM2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H8ZPM2" FT /protein_id="AFD62660.1" FT /translation="MRDSSSSHLPSIKVAHRAAKRRAIRRRRIDLHCGCSVYVHINCRN FT NGFTHRGTHHCASSREWRVYLGDNKSPIFQDNQSGGSTIHQQQDLPRPDTVQPQPEESV FT GSPQGFSQLPSLDDFSDSFWADIFK" FT gene complement(1473..2543) FT /gene="AC1" FT CDS complement(1473..2543) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /db_xref="GOA:H8ZPM3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H8ZPM3" FT /protein_id="AFD62661.1" FT /translation="MPRNPNQFRLAAKNIFLTYPQCDIPKNEALQMLQALPWSIVKPTY FT IRVAREEHSDGHPHLHCLIQLSGKSNIKDARFFDLTHPRRSTNFHPNVQAAKDTNAVKN FT YITKEGDYCESGQYKVSGGTKANKDDVYHNAVNAASAGEAIQIIRAGDPKTFVVNYHNV FT KANIERLFQKAPEPWSPPFPLSSFTNIPDDMQAWADDYFGRGSAARPERPISIIVEGDS FT RTGKTMWARALGSHNYLSGHLDFNSRVYSNEAEYNVIDDISPQYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENSSLRSWTIRNARFIFLTSP FT LYQGSTQGSQAQGNSP" FT gene complement(2069..2464) FT /gene="AC4" FT CDS complement(2069..2464) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:H8ZPL7" FT /protein_id="AFD62662.1" FT /translation="MKLFKCFKPFHGQSSNQHISESQERNIPTDIPISIVSSSYPESLT FT SRMLDFSTLLTPEGLPIFTQMSRQPKTPTPSRITSPKRVIIVNPDNTKCLGEQRQIKTT FT YTTTPSMQLVLERLFRSLEPETPRHLL" XX SQ Sequence 2685 BP; 649 A; 577 C; 673 G; 786 T; 0 other; actggatggc cgcccgattt ttggtgtcct gctttaattt gaacgaggag cgtcttttga 60 tggccccacg cggtcaagcg tgttttcggc gcaattacgt gtgggccctt agaatgctcc 120 ctcaaagcta agttattttg aaagacttgg ggggtaagtt tgtaaatttg tataagttga 180 gcccacatgt aatgatcaaa tcagtcttgt tgcgagactg tgcatgattg ggtggagtgg 240 atactttatg tttgaatttg atttgtaatt gaaaatgccg aagcgggatg gatcatggcg 300 ttcaattgcg ggtacgtcta aggttaggcg ctccctcaat ttctcgcccc gtggaggtat 360 tgggcctaag gcctctgctt gggttaacag gcccatgtac aggaagccca ggatatatcg 420 ggcctacagg tcccctgatg ttcctaaggg ttgtgagggg ccttgtaagg tccaatcata 480 tgagcagcgt cacgacatcg cccataccgg gaaggtgtta tgtatatccg acgtcacgcg 540 cggtagcggc atcactcacc gtgtcggtaa acgtttttgt gttaagtctg tctatatctt 600 aggtaaggta tggatggacg acaacatcaa gttgaggaac cacacgaaca acgtgatgtt 660 ctggttggtt agagacagga gaccctatgg tacgcctatg gatttcggac aggtgttcaa 720 tctgttcgat aacgagccca gtaccgcgac agtgaagaac gatctccgcg atcgtttcca 780 agtgatgcac aaattccaca ccacggtcac cggtgggcaa tatgctgcca aggaacaggc 840 gatggtgaag cgtttctgga gggtcaacaa ccatgtgacc tataaccatc aggaagccgc 900 gaagtacgag aaccacacgg agaacgccct cttattgtat atggcatgta ctcatgcctc 960 taaccctgtg tatgcaactc tgaagattcg gatctatttt tacgattcga tatcaaatta 1020 ataaatgttg tattttattg aatgatcttc gagtacagca tttacatatg atctgtctgt 1080 tgcaaaacga acagctctaa ttacattgtt aattgaaata acgcctaatt gatctagata 1140 caacaaaaca aaatgtctaa atctatttaa atatatcggc ccagaagctg tcactgaagt 1200 cgtccagact tggaagttga gaaaagcctt gtggagatcc aacgctctcc tcaggttgtg 1260 gttgaaccgt atctggacgt ggtagatcct gttgttggtg tatagtggat cctccactct 1320 ggttatcttg aaatataggg gatttgttat ctcccagata tacacgccac tctctgcttg 1380 aggcgcagtg atgagttccc ctgtgcgtga atccattgtt gcggcagttt atgtggacgt 1440 atactgagca cccacagtgt agatcaatgc gtctacggcg aattgccctg cgcttggctg 1500 ccctgtgtgc taccttgata gaggggagat gtgaggaaga tgaatctcgc attgcgtatt 1560 gtccagctgc gtagtgatga gttttcctct ttgtcgagga aatctttata gctagccccc 1620 tctcctggat tgcaaagcac gattgatggt atacctcctt taatttgaac cggtttgccg 1680 tacttacagt tgctttgcca atccttctgg gccccaatca gttctttcca gtgctttagc 1740 tttaggtatt gcggactgat gtcatcaatg acgttatact ccgcctcgtt cgagtaaacc 1800 ctagaattga aatccaggtg tccgctcaag taattatgtg aacctaaagc acgcgcccac 1860 atcgttttcc ctgttcgact atcaccttcg acaatgatac taataggtct ctctggccgc 1920 gcagcggaac ctcttccgaa ataatcgtcc gcccaagctt gcatgtcgtc tggaatgtta 1980 gtgaatgagg agaggggaaa cggaggagac catggttccg gagccttttg aaataggcgc 2040 tcgatgttag ccttgacgtt atgataattc acaacaaatg tcttggggtc tccggctcta 2100 atgatctgaa tagcctctcc agcactagct gcattgacgg cgttgtggta tacgtcgtct 2160 ttatttgcct ttgttccccc agacactttg tattgtccgg attcacaata atcaccctct 2220 ttggtgatgt aattcttgac ggcgttggtg tctttggctg cctggacatt tgggtgaaaa 2280 ttggtagacc ttctggggtg agtaaggtcg aaaaatctag catccttgat gttagacttt 2340 ccggatagct ggatgagaca atggagatgg ggatgtccgt cggaatgttc ctctcttgcg 2400 actcggatat atgttggttt gacgattgac catggaaggg cttgaagcat ttgaagagct 2460 tcattttttg gtatatcgca ttgaggatat gtgaggaaga tgtttttggc agcaagccta 2520 aattggttag gatttcgtgg catattggta aatatgtttg aggacaccag ggatggctct 2580 caacttctct cctatttgct ggtgtcctgg tgtcccattt atactataag cctctaaaag 2640 cctcctcagg acaccggggg caaaagcggc catccatata atatt 2685 //