ID JN377537; SV 1; circular; genomic DNA; STD; VRL; 7884 BP. XX AC JN377537; XX DT 05-MAR-2013 (Rel. 116, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Sugarcane bacilliform virus isolate BRU, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7884 RX DOI; 10.1007/s11262-013-0890-6. RX PUBMED; 23430710. RA Karuppaiah R., Viswanathan R., Kumar V.G.; RT "Genetic diversity of Sugarcane bacilliform virus isolates infecting RT Saccharum spp. in India"; RL Virus Genes 46(3):505-516(2013). XX RN [2] RP 1-7884 RA Karuppaiah R., Viswanathan R., Ganesh Kumar V.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Plant Pathology, Division of Crop Protection, Sugarcane Breeding Institute, RL Sugarcane Breeding Institute Road, Seeranaickenpalayam, Coimbatore, Tamil RL Nadu 641 007, India XX DR MD5; 232bab8cacad42c32d6aab0fdcb3eb67. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7884 FT /organism="Sugarcane bacilliform virus" FT /host="Saccharum officinarum cultivar" FT /isolate="BRU" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /isolation_source="leaf tissue lysate" FT /collected_by="Viswanathan, R" FT /collection_date="Mar-2008" FT /identified_by="Viswanathan, R" FT /note="genotype: Black Reunion" FT /db_xref="taxon:12435" FT CDS 618..1175 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:M1F8Q8" FT /protein_id="AFO11496.1" FT /translation="MKSEAKWETQFNTWKNSHTFENANQELILGTKISNLDLNHNIRTT FT CYRVDLGYKVLLTSQQKAQEHRAELFSVTRKHTVEHNKQLKLVAEKAEQSLIIQKEQRA FT RLKRIEDGLSTLSREIHDLRVEYLKRRPLSKEDVAELVLAISEQPKVIEKQTELLLEKV FT KKLVEAVHEEVETVHHMVRRIS" FT CDS 1175..1546 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:M1F6K5" FT /protein_id="AFO11497.1" FT /translation="MGISEPAYAQALAKTKTIFGDSSEGFISATPGATTAAKQLNTVIE FT LLLQLHGKLKALEEKLQDLKEDISKKADKPSTSGXDKQFDDLARKIEGLRTGSEPKKPI FT ERGKLKVKANPFDLLKKIQ" FT CDS 1546..7479 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H" FT /db_xref="GOA:M1F5N3" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:M1F5N3" FT /protein_id="AFO11498.1" FT /translation="MAQQVRGTGSSTVLEDGTVLDDQIRDYRRPQHLKHELSRKTAKAL FT SWVKTTDDNPREQTLEMVMSPEAELERSLKKRARAFPAEVIYSPRSDDIHHRVFVGSSS FT QDVMIVXDNQIDMTYIKEESFEKLEQAGFRYIHPGALAVRIQPLHAAWSGKLAFIVLRD FT VRNNPPTTLGAMEIDLSKGAQLIYVLPNFMCTIKDFYHGIQLSVKTKGYEGWQGEANLH FT LERLITGRLSNTSNVAFKYKIDGVTAYLKTNGIKAIDAQKESTKKIRGGEWNVQPSRVE FT VVMEPRDMMQSQNFDGTTSFRFTNFQASASRPAPTYNDEDEVEMEAHMALCEDIEEETD FT QQWIDRYLSEYSAQQKVVGGSDEEEEIISTFLSGIHEEDEAYPAEEIEEEYPAIKRLEE FT LMKTRVIVKEVPEKSEQPQEAKMASTSEGSSAIWQPGTMDLDGNMPGYAPAQGATGWDN FT SASSSKKNYGGNSRKFKNESEFFNLPSAMATTGAILVLTMNNYAKEFERWQSINTNLLA FT TQSFETADDKITRIENFFGRNEKLMFQTWGMAFPNAFDTLRGQALGTNGTANVFAQIKR FT VLLGEVPEQGTTGVQDAAYKKIKSLVCTEMTYPALMRYMVGYRNLAARSGRAWANNELT FT NEFFTKLPGKLGDKVKEAFVAKYPSVERHVPAAIRFTYDYLEEICTENNFQKQLRSLNF FT CKGFPVVNPVGTKKYGKRYGTRKARSYRGKPHSSHVRIERTRYLKQRKDGKGEKKCRCF FT VCGSTEHLMKDCKSPMKRQDRVNLAREIDIPDNYDIVSVGFDEEDTEDIYSVSENEENQ FT AHLGVSYEDPQLPTLPTSFEEWEELYKEEFTFMAEADESSDDEKGPFLVGPKDGFRHQM FT IVSQKQYKCVHDWEHQKDRTRPCKRCLKTVSKGEYAYCKICKVGVCNDCALWCYQIKAP FT ASSEVKKPSSSINYEKLARQLLLENSKLKEEKKILIEELNKEIKARQEAEKNKAVFVEE FT TSSEVNDEIETWKTKAELFEALYNEALNKPSSSAVKEGLYQTQITHLTKELRQLEAGME FT VNQAVESEEEDEMEEVSLMATAVKDQMFRFPVVIEVPEVGKVQLTALLDTGATRSCINK FT PFIEDKMLQDTAFKVKISGVNSITYLDKQVKDGAKLWAGSSWFRLPLTYVGNMHMGEKT FT QMRQIGRRTVTFYKYISSIQANEFLQAEVDEINIATSEGGFIDKPFMSKNKKLIEEMKE FT QGYMGEDTLKHWEKNCSDAIFCNPSLEESDWKVEQKRSTSTSQVSKPTNSCKQKLRKSI FT LQHLRWIHDKPFTSKNKQLIEEMKEQGYMGEDTSKHWEKNKEKCKIELINPDLIIKDKP FT ITMLTIQTKEARRKHVDALLARGEIRKSSSPHRTNAFIVESGTSVDPVTKKEIRGKPRL FT VFNYKRLKENTWPAQYSLPGINALLKNVARAKIFSKFDLKSGFHQVAMDPESIPLTAFT FT AYNQLYVWLVMPFGLKNAPAVFQRKMDDCFRGTERFIAVYIDDILVFSESEEKHAEHLW FT IMLQICKKNGLILSPSKYKIGVKRVDFLGSTIGDNQLAVQEHIVSKIADFDEERLKTKE FT GLKSWLATLNYARNHIKDMGKLLGPLYPKTSEKGAKGLNSEDWKLISRIKTMVRNLPSL FT TIPPDDAYIIIETDACATGWGAVCKWKKSKADPRSSELICRYASGKFDKPKGTCDAEIY FT GVMNGLEKMRLFYLDKREITVRTDSAAIEWFYNKSVEHKPSEIRWIRFMDYITGAGPTI FT VIEHIKGKHNGLADILSRLKAKLAESPSEEVVLLAKALKEIAYYPDHPQVPKLIEWGKQ FT ILDPFPKFKKDMFERTEHIMMATQEPTLLCGCRKPAIMLTSGTRFNPRRRFYKCAMNIC FT HCWYWADLLEEYVQERIEDFMVENFDKKTKLDEPSSSNVHPEEDYEEHRSSVIDRPRPT FT DDHFRPWGDISSWLSLEERHTDEGKIEDAIDLTDVSNDDQWERS" XX SQ Sequence 7884 BP; 2660 A; 1471 C; 1878 G; 1873 T; 2 other; tggtatcaga gcgaggtatg atttacatat cagttatgtt ctaatttcct aggataggga 60 gccgagggct ctgctgaaga gtttaaggac aactagctgt gcaagtttca atagacgata 120 cgtcgaaagg ttgaataccc tctatcttgt ttacactacg aactagtggt tgttctaggg 180 gagaacgtta atgcggggca agcttagttc attctgaaaa tcaggtagac tctggtctag 240 ataacgttga tagttagtgc aaaggggact agatctggca aggtaaaaag tacccgtcaa 300 ggcaggtggc cgctcaaggg gaagagaaac ctagagatca aaagttcaat tgcaaatact 360 atctatcagt tttatctgga ttgtatgcta ctatctgaga ctaagattca tcactaagaa 420 ctaccttcgc aagccttcct gaatccgcca ctatagtagt atactagtac acaagagaag 480 aaggaactat atacctgtaa gacttaagtc tagaaaggaa ccgctggaac tggctagaag 540 tctagagact ctgaaagcat cccgaggtaa accctatctc ctgttagaac agagatactg 600 attgtatcta ccgtcccatg aaatctgaag ccaagtggga aacccagttt aacacttgga 660 aaaactctca taccttcgaa aacgctaacc aagagcttat tcttggaaca aaaatttcta 720 atttagattt aaatcacaat attcgtacta cctgttatag agtagatctt ggatacaaag 780 ttctgctaac atcgcagcag aaggctcagg agcatagagc agagttgttt tctgtcacca 840 gaaagcacac agttgagcac aacaagcagc tcaagcttgt tgccgagaag gctgaacaat 900 cgctgatcat tcagaaggaa cagcgtgcac gtctgaagcg catagaagac ggcctatcga 960 ccctcagtag ggaaatccac gaccttcgtg tggaatacct gaagcggagg cctttatcta 1020 aggaagacgt tgctgaattg gtgctcgcca tctccgagca accaaaagtt atcgagaagc 1080 agactgagct acttcttgag aaagtcaaga agttggtaga agctgtccac gaagaagttg 1140 agacggttca ccacatggtg aggcgtatca gctgatgggt atcagtgagc cagcatacgc 1200 tcaggccctc gcgaagacaa agactatctt cggtgattca agtgaagggt ttatttctgc 1260 tactccagga gctacgacag cagcaaaaca gctcaatact gttattgagt tacttctaca 1320 gctgcacgga aagctcaaag ctcttgaaga gaaacttcaa gacctgaagg aagatatctc 1380 gaagaaggcg gacaaaccca gcacttccgg gkttgacaag cagttcgacg atcttgctag 1440 gaagatcgaa ggactgagga cagggtccga gcctaagaag cctattgaac gaggaaagct 1500 caaggtcaaa gctaacccct ttgatcttct caagaagatt caataatggc tcaacaggtt 1560 cgagggactg gttcttctac agtcctagaa gatggtacag ttcttgatga ccaaatcaga 1620 gattatagaa gacctcaaca tttgaagcat gagttatcaa gaaagacggc gaaggctctt 1680 agttgggtga agacaactga tgacaaccca agagagcaga ctcttgaaat ggtgatgagt 1740 cctgaagcag aattggagag atcgttgaag aagagagcta gggcattccc agctgaagtc 1800 atatactctc caagatcgga tgatattcat cacagagtgt ttgttggatc gtcaagccaa 1860 gacgtcatga ttgtcgwtga caatcaaatt gatatgacgt atataaagga agaatccttc 1920 gagaagctcg agcaagccgg tttccggtat attcatcccg gagcactagc tgttagaata 1980 cagccactac atgcagcttg gtcggggaag ctagcattca ttgtcctaag agatgtgagg 2040 aacaacccgc caacaacatt gggagctatg gagattgatc tgagcaaagg agcacaactc 2100 atctatgtgc tacctaattt tatgtgcacc ataaaagatt tctatcatgg tattcagctc 2160 tcagtaaaaa caaagggata tgaaggatgg caaggtgaag ccaaccttca tcttgaaaga 2220 ttgatcactg gaagactctc caacacctca aatgttgcat ttaaatacaa gattgatggt 2280 gttacagctt atttgaagac caatggtata aaagccattg atgcgcagaa agagtctaca 2340 aagaagataa gagggggaga atggaatgta caaccctcaa gagtagaagt ggtcatggaa 2400 cctagggaca tgatgcaaag ccaaaacttt gatggcacaa catcattcag gttcacaaac 2460 ttccaagcct cagcaagcag acctgcaccg acatataatg atgaagacga ggtagaaatg 2520 gaagctcaca tggctttatg cgaggatatt gaagaggaaa ccgatcaaca atggattgat 2580 cgatatttat cagagtactc tgcccagcag aaggtggtag gaggaagcga tgaagaagaa 2640 gaaattattt caacttttct atctggaatt catgaagaag atgaagccta cccagctgaa 2700 gaaattgaag aagagtaccc agctatcaag agactcgagg agctcatgaa aactcgagta 2760 attgtgaaag aagtaccaga gaaatctgag cagccacaag aagcaaagat ggcatctaca 2820 tctgaagggt catctgcaat ctggcagcct ggtacaatgg atctggatgg aaacatgcct 2880 ggctatgcac cagctcaagg agctactgga tgggacaatt ctgcatcatc tagtaagaag 2940 aattatggag gaaattccag gaagttcaag aatgaatcag agttctttaa tctaccatca 3000 gcaatggcaa caacaggggc tattctagtc cttacaatga acaattatgc caaggagttt 3060 gaaagatggc aatccattaa tacaaatctc ttagctacac agagctttga gactgctgat 3120 gacaagatta caagaattga gaattttttt gggagaaatg agaaactgat gtttcagaca 3180 tggggaatgg ccttcccaaa tgcattcgat actctgagag gacaagcact tggtacaaat 3240 ggaacagcaa atgtttttgc tcaaatcaag agagtgctac taggagaagt tcctgaacaa 3300 ggaacaactg gagttcaaga tgcagcgtac aagaagatca agtctcttgt atgtacagag 3360 atgacatacc ctgcactgat gagatacatg gttgggtata gaaatctagc tgcaagatct 3420 ggaagagctt gggcaaataa tgagctgacc aatgaattct tcaccaagtt acctggcaag 3480 ttaggtgaca aagtgaaaga agcttttgtt gccaagtatc ccagtgttga gagacatgtt 3540 cctgctgcaa taaggtttac atatgattac cttgaagaga tatgcacaga gaacaacttc 3600 cagaagcaac taagaagcct gaacttctgt aaaggctttc cggttgttaa tccagtggga 3660 accaagaaat atggaaagag gtatggtaca agaaaagcaa gatcatacag aggaaaacct 3720 cacagttccc atgtcagaat tgagagaact cgctacctca agcagagaaa agatggtaaa 3780 ggcgagaaga aatgtagatg ttttgtttgt ggttcaacag aacatctgat gaaagattgc 3840 aaatctccaa tgaagagaca ggacagagtg aatctggctc gagaaatcga catcccagat 3900 aattatgata ttgtctcagt gggatttgat gaagaggata ctgaggacat ttattcagta 3960 tcagaaaatg aagaaaatca agcacattta ggagtttctt atgaagaccc gcaactccca 4020 acattaccca caagttttga agaatgggaa gaattgtaca aagaggagtt cacatttatg 4080 gctgaagctg acgaatcatc agatgatgag aagggtccat tccttgtagg accaaaagat 4140 gggttcagac accagatgat agtttcccag aaacaataca agtgtgttca tgattgggaa 4200 catcagaaag acagaactcg tccctgcaag aggtgcttga aaacagtgag taaaggagaa 4260 tatgcatact gcaaaatttg caaggttggt gtttgcaatg actgtgcact atggtgttat 4320 cagatcaaag caccagcaag ctctgaagta aagaagccaa gcagtagcat caattatgag 4380 aaactagcca gacagctgtt gctagagaac agcaagctca aagaagagaa gaagatcctt 4440 attgaggaac tcaacaagga gattaaggct agacaggaag ctgagaagaa caaagctgtg 4500 tttgttgaag aaacttcctc agaagtaaat gatgagattg aaacgtggaa gactaaggct 4560 gaattatttg aagctttata caatgaagcc ttgaacaaac caagcagcag tgcagtcaaa 4620 gaaggactgt atcaaacaca gatcactcat ctcaccaaag agcttagaca gttggaagct 4680 ggaatggagg tgaatcaggc tgttgagtct gaagaggaag atgagatgga agaagtatcg 4740 ttaatggcta cagcagtaaa agatcaaatg ttcagattcc cagtggtgat tgaagttcca 4800 gaagttggga aagttcagtt aactgctttg ctagatacag gagcaacaag atcctgtata 4860 aacaagccat tcattgaaga caagatgctg caagatacag catttaaggt caagatttca 4920 ggagtgaatt caattacata tcttgacaag caagtgaaag atggagccaa gctatgggca 4980 ggaagtagct ggttcagact ccctctcaca tatgttggaa atatgcatat gggtgagaag 5040 acgcaaatgc gtcagattgg aaggagaaca gtgacgttct acaagtacat ctcaagtatc 5100 caggcaaatg agttcttgca agctgaagtt gatgaaatca acattgcaac atctgaagga 5160 ggattcattg acaaaccctt catgagcaag aataagaagc tgattgaaga aatgaaagag 5220 caaggataca tgggagaaga tacattgaag cattgggaaa agaattgctc ggatgcaatt 5280 ttctgcaatc cttcgctgga ggagtcagat tggaaggtag aacagaaacg ttctacaagt 5340 acatctcaag tatccaagcc aacgaattct tgcaagcaga agttgaggaa atcaatattg 5400 caacatctga ggtggattca tgacaaaccc ttcacgagca agaacaagca gcttattgaa 5460 gaaatgaaag agcaaggata catgggcgaa gatacatcga agcattggga aaagaataag 5520 gagaaatgca agattgagct tatcaatcca gatctcatta tcaaggataa gccaattaca 5580 atgcttacaa tccagacgaa agaagcaagg aggaagcatg ttgatgctct ccttgcaaga 5640 ggtgagatca gaaagagtag cagtccacat cggactaatg cttttattgt ggagtcaggc 5700 acatctgtag acccagtcac gaagaaagag atcagaggca agccaagact ggtgttcaac 5760 tacaagaggc tgaaagaaaa cacatggcct gctcagtact cgctaccagg gatcaatgca 5820 ttgctgaaga atgttgcaag agccaagatc ttttcaaagt tcgatctgaa gagtggcttt 5880 catcaagtag caatggatcc agaaagcatt ccattgacgg cattcacggc ttacaatcag 5940 ctatatgtgt ggttagtgat gccattcgga ttgaaaaatg cacctgcagt gttccaaaga 6000 aagatggatg actgtttcag aggaaccgaa aggttcatcg cagtctatat tgatgacatc 6060 ctagtgttct ctgaatcaga ggagaaacat gcagaacact tatggattat gctgcagata 6120 tgcaagaaga atgggttaat cttaagcccc tccaagtaca agattggagt aaaaagagtg 6180 gattttcttg gttcaacaat tggtgacaat cagttagctg ttcaagagca tattgtatca 6240 aaaatagctg attttgatga ggagaggttg aaaaccaagg aaggattgaa gagctggcta 6300 gcaacgctaa attacgccag aaatcacatc aaggatatgg gtaaattact tggaccctta 6360 tatcctaaga cttcagagaa gggagctaaa ggcttaaatt ctgaagattg gaaattgatc 6420 agcagaatca aaacaatggt cagaaatcta ccaagtctga ctattccacc agatgatgca 6480 tacattatca ttgaaactga tgcatgtgca actggatggg gagctgtttg caaatggaag 6540 aaatccaagg ctgatccaag aagctcagag ctcatatgtc gatatgcaag tggcaaattc 6600 gacaaaccca aaggaacctg tgatgcagaa atctatgggg ttatgaatgg gctagagaaa 6660 atgagactct tttatcttga taaaagagaa atcactgtca gaactgatag tgcagcaatt 6720 gagtggtttt acaacaagag tgtagaacat aaaccttcag agatcaggtg gatcaggttt 6780 atggactata tcactggagc tgggccaacg attgtgattg agcacatcaa aggaaaacac 6840 aatggcttag cagacattct ctcaaggctc aaggcaaaac ttgctgaatc accatctgaa 6900 gaggtagtat tgcttgcaaa agcactgaag gaaattgcct actacccaga tcatccgcaa 6960 gttccaaagc ttattgaatg gggaaaacaa attcttgatc cattccccaa gttcaagaaa 7020 gatatgtttg aaagaacaga acatatcatg atggccacac aagaacctac tctgttatgt 7080 ggatgcagga aacctgcaat catgttaaca tcagggacaa ggtttaatcc tcgcaggaga 7140 ttttacaagt gcgccatgaa catctgccac tgctggtatt gggcagattt gcttgaagaa 7200 tacgtccaag aacgtattga agattttatg gtcgaaaact tcgacaagaa gacaaagctg 7260 gatgagccaa gctcatcaaa tgttcaccca gaagaggact atgaagaaca ccgttcgagt 7320 gtcatcgaca ggccaaggcc tacagatgat catttcagac catgggggga tatttcatcc 7380 tggctgagtc tagaagaacg ccatacagac gaaggcaaaa ttgaagacgc aatcgatctt 7440 actgacgtaa gcaatgacga tcagtgggaa agatcgtaag caatgacgta tggagcgtgg 7500 aggacccata agagcactca gaaaggaatc tcaactttcg gtgtgtgagt gcgcatcctg 7560 tgcgatgctt tgtatctttt attatgctgt gtgtgtcttt tggcatctgt gccactttac 7620 ctttgtcggc cacgttgcct ttgcttagca tctacgcaag catagcgctc ggctggagtg 7680 tgttccctct gcctatataa ggcatggttg taagactctt acactcatcg gtagttcacc 7740 acatgagtat ttgagtcaag tttggcttga ataataagaa ttacaccttt ccgctacatt 7800 tcgcaactct tgatcctatg atccagtagg ttgagaacaa gaccgaagtt catagttgag 7860 atccgtgtat aggggaccgt cccg 7884 //