Dbfetch
ID JN377536; SV 1; circular; genomic DNA; STD; VRL; 7673 BP. XX AC JN377536; XX DT 05-MAR-2013 (Rel. 116, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Sugarcane bacilliform virus isolate BT, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7673 RX DOI; 10.1007/s11262-013-0890-6. RX PUBMED; 23430710. RA Karuppaiah R., Viswanathan R., Kumar V.G.; RT "Genetic diversity of Sugarcane bacilliform virus isolates infecting RT Saccharum spp. in India"; RL Virus Genes 46(3):505-516(2013). XX RN [2] RP 1-7673 RA Karuppaiah R., Viswanathan R., Ganesh Kumar V.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Plant Pathology, Division of Crop Protection, Sugarcane Breeding Institute, RL Sugarcane Breeding Institute Road, Seeranaickenpalayam, Coimbatore, Tamil RL Nadu 641 007, India XX DR MD5; 902d6410a8fcc17e18417e26be8d1f92. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7673 FT /organism="Sugarcane bacilliform virus" FT /host="Saccharum officinarum cultivar" FT /isolate="BT" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /isolation_source="leaf tissue lysate" FT /collected_by="Viswanathan, R" FT /collection_date="Mar-2008" FT /identified_by="Viswanathan, R" FT /note="genotype: Black Tanna" FT /db_xref="taxon:12435" FT CDS 619..1176 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:M1F5N1" FT /protein_id="AFO11493.1" FT /translation="MKSEAEWETQLNTWKNSHTSANAIQELIPGTKISNLDLNHNIRTT FT CYRVDLGYKVLLTSQQKAQDHRVQLFSDIRKHTVEHNKQLKLIEDKAEKSLIIQKEQRA FT RLKQIEDGLSTLSREIHNLRVEYLKRRPLSKEDVAELVLTISEQPKLIEKQTELLLEQV FT KKLVEAVHEEVETVHHMVKRIS" FT CDS 1176..1547 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:M1F4N4" FT /protein_id="AFO11494.1" FT /translation="MSINEPAYAQALAKTKTIFGDSSEGFISATPGATTAAKQLNTVIE FT LLLQLHGKLKALEEKLQDLREDIGKKADKPSTSGLDKQFDDLVKKIEGLKTGSEPRKPI FT ERGKLKVKANPFDLLKKIQ" FT CDS 1547..7279 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H" FT /db_xref="GOA:M1F6J9" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:M1F6J9" FT /protein_id="AFO11495.1" FT /translation="MATVRGTGSSTVLEDGAVLNDQIRDYRRSQHLKHELSKKTAKALS FT WVKTTDDNPREQTLEMVMSPEAELERSPKKRARAFPAEVIYSPRSDDIHHRVFVGSSSQ FT DVMVVDDNQIDMTYIKEETFEKLEQAGFRYIHLGILAIRIQPLHTAWSGKLVFLVLRDV FT RNNPPTTLGAMEVDLSKGAQLIYVLPNFMCTIKDFFHGIQLSIKTKGYEGWQGEANLHL FT ERLITGRLSNTSNVAFKYKIDGVTAYLKTNGIKAIDAQKESTKKIRGGEWNIQPSKVEV FT VMEPREMMQSQNFDGTTSFRFTNFQASASRPAPTYNDEDEVDMEAHMALCEDLDEEETD FT QQWIDRYLSEYSAQQKMVGENEEEEEEEEIISTFLSALSCEEEAYPAEEIEEEYPAIKR FT LEELMKTRVIVKEVPEQSEQPQEAQMASNSEGSSAIWQPGTMDLDGNFPGYAPAQGATG FT WDNSAQGATGWDNFSSSKQEVLWWKFKEVQKESEFFNLPSAMATTGAILVLTMNNYAKE FT FERWQSINTNLLATQSFETADDKITRIENLLGETEKLMFQTWRMAFPTAFDTLRSQALG FT TNGTANVFAQIKRVLLGEVPEQGTTGVQDAAYKKIKSLVCTEMTYPALMRYMVGYRNLA FT ARSGRAWANNELTNEFFTKLPGKLGDKVKEAFVAKYPSVERHVPAAIRFTYDYLEEICT FT ENNFQKQLRSLNFCKGFPVVNPVGTKKYGKRYGTRKARSYRGKPHSSHVRIERTRYLKQ FT RKDGKGEKKCRCFVCGSTEHLMKDCKSPMKRQDRVNLAREIDIPDNYDIVSVGFDEEDT FT EDIYSVSENEENQAHLGVSYEDPQLPTIPTSFEEWEEFYKEEFTLMAEVDDSSDDEKGP FT FLVGPKDGFRHQMVVSQKQYKCTHDWEFQKDRTRPCKRCLKTVSKGEYVYCKTCKVGVC FT NDCALWCYQIKAPSSSEEKKRPMINYEKLAKQLLLENSKLKEEKKVLIEELNKEIKARQ FT EAEKNKAVFVEETSSEVNDEIEMWKSKAELYEALYNEALSRPSSSEVKEGLYKTQINHL FT TKELRQLEANIEINQAVESGGESETEEVTMMATAVKDQMFRFPVVIEVPEVGKVQLTAL FT LDTGATRSCINKPFIEDKMLQDTAFKVRISGVNSVTYLDKQVKDGAKLWAGSSWFRLPL FT TYVGDMHMGEKHKANRMQFSAILSRRSQTGRRTVTFYKYISSIQANEFLQAEAEEMNIA FT TSEGGFIDRPFMSKNKKLIEEMKEQGYMGEDTLKHWEKNKVKCKIELINPDLIIKDKPI FT TMLTIQTKEAMRKHVDALLARGVIRKSTSPHRTNAFIVESGTSVDPITKKEIRGKPRLV FT FNYKRLNDNTWPDQYSLPGINALLKNVARAKIFSKFDLKSGFHQVAMDPESIPLTAFTA FT YNELYEWLVMPFGLKNAPAVFQRKMDDCFRGTERFIAVYIDDILVFSSSEEEHAEHLWI FT MLQICQKNGLILSPSKYKIGVKRVDFLGSTIGDNQLAVQDHIVSKIADFDDEKLKTKEG FT LKSWLATLNYARNHIKDMGKLLGPLYPKTSEKGAKGLNSEDWKLISRIKTMVRNLPKLT FT IPPEDAYIIIETDACATGWGAVCKWKKSKADPRSSELICRYASGKFDKPKGTCDAEIYG FT VMNGLEKMRLFYLDKREITVRTDSAAIERFYNKSVEHKPSEIRWIRFMDYITGAGPNIV FT IEHIKGKHSGLADILSRLKAKLAEAPSEEVVLLAKALKEIAYYPDHPQVPQLIEWGKQI FT LDPFPKFKRDKFERTEHAMMATQEPTLLCGCRKPAIMLTSGTRLNPSRRFYKCAMNICH FT CWYWADLLEDYIQERIEEFMCDNFDKKMGLDEASSSYPERSSIIDRPRPTDDHFRPWGD FT VSFWLSKEEERHTEVNDPEDAIDLADACNDDQWRRS" XX SQ Sequence 7673 BP; 2611 A; 1437 C; 1799 G; 1826 T; 0 other; tggtatcaga gcgaggtatg atttacatat cagttatgtt ctaatccctt aggataggga 60 gccgagggct ctgctgatga gtttaaggac aactagctgt gcaagtttca atagatgata 120 cgtcgaaagg ttgaaatcca tctatcctgt ttacactacg aactagtggt tgttctaggg 180 gagaacgtta atgcggggca agcttagttc attctgaata tcaggtagac tctggtctag 240 ataacgttga tagttagtgc aacgggagta agatctggca aggtaagagt acccgtcaag 300 gcaggtggcc gctcaagggg aagataaacc tagagatcaa agctctattg caatactatc 360 tatcagtttt atctggattg tatgctacta tctgagacta agattcatca ctaagaacta 420 cctacgcaag ccttcctgaa tccgccacta tagtagtatc ctagtaaacc aggagaagaa 480 ggaactatat acctgtaaga cttaagtcta gaaggaaccg ctggaactgg ctagaagtct 540 agagactctg aaagcatccc aaggtaaacc ctatcgtttg ttagaacaaa ggcaaagggt 600 ttgtatctac ccgtccgcat gaaatctgaa gccgagtggg aaacacagtt aaacacttgg 660 aaaaactccc atacctccgc aaacgctatc caagagctta ttcctggaac aaaaatctct 720 aatttagatt tgaaccacaa catacgtact acttgttata gagtagatct tggatacaaa 780 gttttactaa cctcgcagca gaaggctcag gaccacagag tacagttgtt ttctgacatc 840 agaaagcaca cagttgagca caataagcag ctcaagctta ttgaggataa ggcggaaaaa 900 tcgctgatca ttcagaagga acagcgtgca cgtctgaagc aaatcgaaga cggcctatcg 960 accctcagta gggagatcca caaccttcgt gtggaatacc tgaagcggag gcctttatcg 1020 aaagaagacg ttgctgaatt ggtgctcact atatccgagc aaccaaaact tatcgagaag 1080 cagactgagc tacttcttga gcaagtcaag aagttggttg aagctgtcca cgaagaagtt 1140 gagacggttc accacatggt gaaacgtatc agctaatgag catcaacgaa ccagcttacg 1200 ctcaggccct tgcaaaaaca aagaccatct ttggtgattc aagtgaaggg tttatatctg 1260 ctactccagg agctacaact gcagccaaac agcttaatac tgttattgag ttactcctac 1320 agctgcacgg caagctcaaa gctcttgaag agaaacttca agacctgaga gaagacatcg 1380 gaaagaaggc ggacaagcct agcacatccg ggcttgacaa gcagttcgac gatcttgtca 1440 agaagatcga aggactgaaa acagggtccg aaccacggaa gcctattgaa cgaggaaagc 1500 tcaaggtcaa agctaacccc tttgatcttc tcaagaaaat tcaataatgg ctacggttcg 1560 agggactggc tcttccacag tcctagaaga tggagcagtg cttaatgatc agatcagaga 1620 ctacagaagg tctcaacatt taaagcacga gttatccaag aagacggcga aagctctaag 1680 ttgggtcaaa acaacagatg acaacccaag agagcaaact ctggagatgg tgatgagtcc 1740 tgaagctgaa ctggagagat caccgaagaa gagagctagg gcattcccag ctgaagttat 1800 ctactctcca agatctgatg atatacatca ccgagtattt gttggatcat ctagccaaga 1860 tgtcatggtt gtcgatgaca atcaaattga catgacatac atcaaagaag aaaccttcga 1920 gaagctggaa caagctggat ttcggtatat tcatctcgga atactggcta ttagaataca 1980 gccgttacat acagcatggt cgggaaagct agtattccta gtcctcaggg atgttaggaa 2040 taacccgcca acaacattgg gagcaatgga ggttgatttg agtaagggag cacaactgat 2100 ctatgtgcta ccaaacttta tgtgcaccat aaaagatttc tttcatggta ttcagctctc 2160 aatcaagacc aaaggctatg aaggctggca gggagaggcc aatcttcatc tagaaagatt 2220 gatcactgga agactctcta acacctcaaa tgtcgcattc aagtacaaaa ttgatggtgt 2280 tacagcttat ctcaagacca atggtataaa agccattgat gcacaaaagg agtctacaaa 2340 gaagataaga ggcggtgaat ggaacattca gccctcaaaa gtagaagtgg tcatggaacc 2400 tagagaaatg atgcaaagcc aaaactttga tggcacaaca tcatttaggt tcacaaactt 2460 ccaagcctcg gcaagcagac ctgcaccaac atataatgat gaggatgaag ttgacatgga 2520 ggctcacatg gctctatgtg aggacctgga cgaggaggaa actgatcaac aatggattga 2580 tcggtatcta tcagagtact ctgctcagca aaagatggtg ggagaaaatg aagaagaaga 2640 agaagaagaa gaaattattt caacttttct atctgcactt tcatgtgaag aagaagccta 2700 cccagctgaa gaaattgaag aagagtaccc agcaatcaag agactcgagg agttaatgaa 2760 aactcgagta attgtgaagg aagtaccaga acaatcagag cagccacaag aagcacaaat 2820 ggcttctaac tctgaaggat cgtctgctat atggcaacct ggtacaatgg accttgatgg 2880 aaacttccct ggctatgcac cagctcaagg agctactgga tgggacaatt cagctcaagg 2940 agctactgga tgggacaatt ttagttcatc caagcaagaa gttctatggt ggaaattcaa 3000 ggaagttcaa aaagaatcag aattctttaa tctaccatca gcaatggcaa cgaccggagc 3060 tattctggtc cttacaatga ataattatgc caaggagttt gaaaggtggc aatctatcaa 3120 cacaaatctg ttagccacac agagttttga aacagctgat gacaagatta caagaataga 3180 gaatctgtta ggggaaacag agaagcttat gtttcagaca tggagaatgg cattccctac 3240 agcatttgac actctaagaa gtcaagcact tgggacaaat ggaacagcca atgtatttgc 3300 ccaaatcaag agagtgttac taggagaagt tcctgaacaa gggactactg gagttcaaga 3360 tgcagcatat aagaagatca aatctcttgt atgtacagag atgacatacc ctgcactaat 3420 gagatacatg gttgggtata gaaatcttgc tgcaagatct ggaagggcat gggctaataa 3480 tgagctaacc aatgaattct tcaccaagtt acctggcaag cttggagata aagtcaaaga 3540 agcttttgtt gccaagtatc ccagtgtgga gaggcatgtt cctgctgcaa tcagattcac 3600 atatgactat cttgaagaaa tctgcacaga gaacaatttc cagaaacaat tgagaagcct 3660 aaacttctgc aaaggctttc cggttgtaaa tccagtcgga acaaagaagt atggcaagag 3720 atatgggaca agaaaagcaa gatcttacag aggaaaacct cacagttccc atgtcagaat 3780 agagagaact cgctatctta agcaaagaaa agatggcaaa ggtgagaaga aatgcagatg 3840 ttttgtctgt ggctcgacag aacatctaat gaaggattgc aaatctccaa tgaagaggca 3900 agacagggtt aatctagccc gagaaattga cattcctgat aattatgata ttgtctcagt 3960 gggatttgat gaagaagata ctgaggacat ttattcagta tcagagaatg aagaaaacca 4020 agctcatcta ggagtctcat atgaagatcc acagctgcct acaattccca caagctttga 4080 agaatgggaa gaattttaca aagaggaatt cacattaatg gcagaagttg atgactcgtc 4140 agatgatgag aagggtccgt ttcttgttgg acctaaagat ggttttaggc accagatggt 4200 ggtttcccag aagcaataca agtgtacaca tgattgggaa tttcagaagg acagaactcg 4260 tccttgcaag agatgtttga agacagtaag caaaggtgaa tatgtttact gtaaaacatg 4320 caaggttggt gtgtgcaacg attgtgcatt atggtgttat cagatcaagg caccatcaag 4380 ttctgaagaa aagaagaggc ctatgattaa ttatgagaag ctagccaagc aactgctatt 4440 agaaaatagc aagctgaaag aagaaaagaa ggttcttatt gaagaactaa acaaggagat 4500 taaggctagg caagaagctg aaaagaacaa agcagtcttt gttgaagaaa cttcctcaga 4560 agtaaatgat gagattgaga tgtggaagtc aaaagctgaa ctttatgaag ccttatacaa 4620 tgaagctttg tcaaggccaa gtagtagtga agtaaaggaa gggttgtaca aaacccagat 4680 caatcatctc acaaaggagc tcagacaact agaagcaaat atagagatta atcaagcagt 4740 tgagtctgga ggagaaagtg agacagaaga agtgactatg atggctacag cagtaaaaga 4800 tcaaatgttc agattcccag tagtaattga agttccagaa gtggggaaag ttcagttaac 4860 tgctctgcta gatacaggtg caacaagatc ctgtataaac aagccattca ttgaagataa 4920 aatgctccaa gatacagcat tcaaagtcag aatatctgga gtaaactcag tcacatatct 4980 tgacaaacaa gtcaaagatg gagccaagct atgggcagga agtagctggt tcagactccc 5040 tctcacatat gtaggagata tgcatatggg tgagaaacac aaagctaata ggatgcaatt 5100 ttctgcaatc cttagcagga ggagtcagac tggaaggaga acggtgacgt tctataagta 5160 catatccagt atccaggcaa atgagttctt gcaagctgaa gcggaagaaa tgaacattgc 5220 tacatctgaa ggaggtttta ttgacagacc atttatgagc aagaacaaga agctgattga 5280 agaaatgaaa gagcaaggat acatgggaga agatacattg aagcattggg aaaagaacaa 5340 ggttaaatgc aagatagagc ttatcaaccc agatcttatt atcaaggata agccaataac 5400 aatgcttaca atccaaacaa aggaggctat gaggaagcat gttgatgctc tcttagcaag 5460 aggagtgatc agaaagagta caagtcctca caggactaat gcttttatag ttgaatcagg 5520 cacatcggtg gatccaatca ccaagaagga aatcagaggc aagccaagat tggtattcaa 5580 ctacaagagg ctaaatgaca acacatggcc tgaccagtac tctttaccag ggatcaatgc 5640 attgctgaaa aatgttgcaa gagccaagat attttcaaag tttgatttga aaagtggctt 5700 tcatcaagtt gcaatggatc cagaaagcat accactcacg gcattcacag catacaatga 5760 gctatatgaa tggttggtga tgccatttgg tttaaagaat gcacctgcag tattccaaag 5820 gaagatggat gactgtttta gagggaccga aaggttcatc gcagtctata ttgatgacat 5880 cctagtgttt tcaagctcag aagaagaaca tgctgaacac ttatggatca tgctgcagat 5940 ctgtcagaag aatgggttaa tcttaagccc ctccaagtac aagattggag taaaaagagt 6000 ggattttctt ggttcaacaa ttggtgataa tcagttagca gtacaagatc acattgtatc 6060 aaaaattgct gattttgatg atgaaaagct gaagaccaag gaaggactaa agagctggct 6120 ggcaacactg aactatgcca gaaaccacat caaggatatg gggaaattac ttggaccctt 6180 atatccgaag acttcagaga aaggagccaa agggttgaat tctgaagatt ggaagctgat 6240 cagcagaatc aagacgatgg tcagaaattt gccaaagctg actattccac cagaagatgc 6300 atatatcatt attgagactg atgcatgtgc aactggatgg ggagcagtgt gcaaatggaa 6360 gaaatcaaag gctgatccta gaagttctga actcatctgt cgatatgcaa gtggaaaatt 6420 tgacaaaccc aagggaacat gtgatgcaga aatctatgga gtgatgaatg ggttagagaa 6480 gatgagactc ttttatcttg ataaaagaga gatcactgtt agaacagaca gtgctgctat 6540 tgagagattc tacaacaaga gcgtagaaca taaaccttct gaaatcagat ggattaggtt 6600 tatggactat atcacaggag ctgggccaaa tattgtgatt gagcatatca aagggaagca 6660 cagtggctta gcagacattc tctcaagact caaggcgaaa cttgctgaag caccatcaga 6720 agaggtagtt ttgttagcaa aagctctcaa agaaattgct tactaccctg atcatccgca 6780 agttccacag cttattgaat ggggaaaaca gattttagat ccatttccca agttcaagag 6840 agacaagttc gaaagaacag agcacgcaat gatggcaact caagagccaa ctctgctatg 6900 tggatgcaga aagcctgcaa tcatgctcac atctggcaca aggctgaatc caagcagaag 6960 attttacaag tgtgctatga atatctgcca ctgctggtat tgggcagatt tgctcgaaga 7020 ttacatacaa gaacgaattg aggaattcat gtgtgataac ttcgacaaga aaatgggatt 7080 agatgaagca agctcatcat accctgaacg ttcaagcatc attgataggc caagacctac 7140 tgatgatcat ttcagaccat ggggcgatgt ttcattctgg ctgagtaagg aggaagaacg 7200 ccacacagag gtgaatgacc cagaagacgc aatagatctc gctgacgcat gcaatgacga 7260 ccaatggagg agatcgtaag cagtgacgta tggtagcgtg gaggacccat aagagcactc 7320 agaaaggaat ctcaactttc ggtgtgtcag tgcgcatcct gtgcgatgct ttgtatcttt 7380 ttctttggtg tgtgtcttta gcatctttac ctttgtcggc cacgttgcct ttgcttagca 7440 tggacgcaaa gcatagcgct cggctggtgt gtgtgccctc tgcctatata aggcatggat 7500 gtaagactct tacactcatc ggtagttcac cacatgagta tttgagtcaa gtttggcttg 7560 aataataaac acctttccgc aatatttcgc actcttgatc ctatgatcca gtaggttgag 7620 aacaagaccg aagttcatag ttgagatcca attggggaat tcgtgcccgt cct 7673 //