ID JN377535; SV 1; circular; genomic DNA; STD; VRL; 7613 BP. XX AC JN377535; XX DT 05-MAR-2013 (Rel. 116, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Sugarcane bacilliform virus isolate BB, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7613 RX DOI; 10.1007/s11262-013-0890-6. RX PUBMED; 23430710. RA Karuppaiah R., Viswanathan R., Kumar V.G.; RT "Genetic diversity of Sugarcane bacilliform virus isolates infecting RT Saccharum spp. in India"; RL Virus Genes 46(3):505-516(2013). XX RN [2] RP 1-7613 RA Karuppaiah R., Viswanathan R., Ganesh Kumar V.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Plant Pathology, Division of Crop Protection, Sugarcane Breeding Institute, RL Sugarcane Breeding Institute Road, Seeranaickenpalayam, Coimbatore, Tamil RL Nadu 641 007, India XX DR MD5; 47cf9b2d047b2587eb456ccdf624bf68. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7613 FT /organism="Sugarcane bacilliform virus" FT /host="Saccharum officinarum cultivar" FT /isolate="BB" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /isolation_source="leaf tissue lysate" FT /collected_by="Viswanathan, R" FT /collection_date="Mar-2008" FT /identified_by="Viswanathan, R" FT /note="genotype: Boetatoe Bilatoe" FT /db_xref="taxon:12435" FT CDS 602..1159 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:M1F6J7" FT /protein_id="AFO11490.1" FT /translation="MRSESEWEQQFLAWKNSHTFENSNQELITGSKITNSDLNHNIRTT FT CYRVDLGYKVLLTSQEKAKAHREELFASNRKQQLEHGRRLKEVAEESAQTLIIQKEQRA FT RLKKLEAGLANLSKEILSLRVEYLKRRPLSREDVAELVLTISEQPKIIEEQTEQLLEKV FT KLLVETVHQEVETVHHMXKRIS" FT CDS 1159..1527 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:M1F8Q0" FT /protein_id="AFO11491.1" FT /translation="MSISEPAYTAALAKTKTIFGESGEGFVSANPGVTTATKQLNTVIE FT LLLQLHGKVKALESTLQELKEDLSKKVDKPSTSGLEKQFDDLTKRIEGLKAAPKPQKVT FT RGSLKVVANPFDLLKKIQ" FT CDS 1524..7202 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H" FT /db_xref="GOA:M1F6K3" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:M1F6K3" FT /protein_id="AFO11492.1" FT /translation="MTQRVRNSGSSTILDDGAILDDQIREYRRAQHIKHNMQRIVADPL FT KWIRTEDENPREKTLEMVMNPEVELQKSLKKRAKAFPAEVIYAPRKDTIHHKVFVGKSS FT MDIMVIDDNQLDMSYIKEESFEKLDQAGLRYIHLGILAVRIQPNTAPHSNWSGKLAFMV FT LRDVRNSPPTTLGAMEIDLSKGAQMIYVLPNFMCTIRDFFQGIQLTVKTKGYENWQGEA FT NLHLERMITARLSNTSNVGFEYKVDGVTAYLKTNSIKAIDAQKESVKHLRGGEWNVLPS FT KVEIAMEPTGYTQQQNYDRTTSFRFSNYQASTSKKAPVYNDEDEEEMEANMAIVEGEEE FT ESDYEWLERFLSEHSSQQKMVGEANFSTDEDAIISEFLDNTGYTEEAYPAIEEEYPAFK FT RLEELMKTKVVVQEIDEQPEEKPTEVKMADTASSSIIHPPSMDLDGNLPGYAPNEESSK FT ARYGGYSRKFKNESEYFNLPSAMATSGAILVLTMDNYAKEFERWKSINTNMLASQTFET FT AEDKITRIENLLGETEKLMFQTWRMAFPEDFNTLKAQAIGVNGTSNVFAQVKRVLLGEV FT PEQGMTNTQDAAYKKIKSLVCTEMTYPAIMRYMVGYRNLAARSGRAWVNNELTVEFFTK FT LPGKLGDKVKAAFKEKYPGIERHVNAAIRFTYDYLEEICTENNFQKQLRSLNFCKGFPV FT VNPQGTRKYNKKYGTRKARTYRGKPHRTHVRIEKQKYLKQREKKCRCNVLRLTGSFDER FT LQESDEKNKIELIWPMKLTIPDGYDIVSVGYDEQDTDEIYSVSENEENQAHLGLSYEDP FT QLPQLPKTFEEWEDYYKDDFAYMAEVRESSDDEDQGPFLVGPKDGFRHQMKVSRKQYIC FT EHVWNFQKDRTRPCKRCLKIVSKGEYAHCHECKVGVCIECAEWLYKVTPPGPDAKKVHI FT PTTHERLVRELLIENSKLKREKQILIDELNKEIKARIELEKGKELAVEESSSTVNEEIE FT MWKSRAETFEALYNEELAKRETAVSVKEGFYQLQIDHLRKELRNLKHAWKKPSRRICEE FT EEMEEVSLMASSTKDEMFRFPVVIEVPEVGKVQLTALLDTGATRSCVNQAFVENKLLQD FT TRFRVKISGVNSTTYLSKQIKDGAKLWAGNSWFKLPLTYVGDMHMGEKTQMLIGCNFIQ FT SLAGGVRLEGRTVTFYKYISSIQANEFLQAEEEINIATSEQEFINKNFMIKNKKLLEEM FT KEQGYMGEDTLAHWEKNQVKCKIEVINPDLIIKDKPITMLTIQTKETMRQHIEALLARK FT VIKPSTSPHRTKAFIVESGTSIDPITKKEVRKSQRLVFNYKRLNDNTWPDQYSLPGINA FT LLKNVARAKIFSKFDLKSGFHQVAMDPESIPWTAFTAYNELYEWLVMPFGLKNAPAVFQ FT RKMDNCFRGTERFIAVYIDDILVFSNSEEEHAEHLWAMLQICKKNGLILSPTKYKIGVK FT RVDFLGSTIGDNQLAVQDHIISKIADYDDEKLKTKEGLKSWLATLNYARNHIKDMGKLL FT GPLYPKTSEKGERRLNSEDWKLISRIKTMVRSLPKLTISPEDAYIIIETDACATGWGAV FT SKWKKNKNDPRSTEQICRYASGKFDKPKGTCDAEIYGVMNGLEKMRLFYLDKREITVRT FT DSTAIERFYNKSAEHKPSEIRWIKFMDYITGAGPTIVIEHIKGKHNGLADLLSRLKAKM FT AEAPSQEGMMLAEAIREIINYPEHPMTEKLLEWGKKIVPPFPNHKRDMFERTESAMMIH FT EEAVLRCACNKPAILLCSGTSRNPGRKFYKCAYDNCFCWYWQDAIEEYVQDRIDDFMKE FT NFDDFGHKEVSSDPKPSERPELDGLQKIKEDYATIDEPPDWKELGDTCAEEATTTHTGI FT EEALDLLDVSNDDQWRNT" XX SQ Sequence 7613 BP; 2604 A; 1408 C; 1845 G; 1755 T; 1 other; tggtatcaga gcgaggtatg attttctgca taatgtttta aggttcttag atagggagcc 60 gagggctctg ctgataagtt cgaaggacaa ctagctgtgc aagttcttaa tagatgatac 120 gtcgaaaggt tgaaattctg ggtttatttt ggttctaagt aagagaaata agtggttatt 180 ctaggggaga acgttaatac agagcaagcc tagttcattc tgaacgctgg acgactgtag 240 tgctggtgtg atttgtgatt agtgctaaga gggcttagat ctggcaagat aagtacccgc 300 taggcaggag gccgctcagg ggaagtaaat ctagagatcg aaagactctt ggtggtatga 360 tcacaagtta tatcggtatg aaagttatct ggttctaaga ttcatcacta ggaactactt 420 ttgtaagcct ccctgaagtc gccactagag tatctaagag agacagaaaa caactagatc 480 tatatacctg taagacttaa gtctagaagg aacctctgga actggctaga agtctggaga 540 ctttgaaagc atcccaaggt aaaccctatc gttacttaaa acagaaaggc agaagccttg 600 catgagatcg gaatctgagt gggaacaaca gtttctcgct tggaaaaact cacacacgtt 660 cgaaaattcg aaccaggaac tcatcactgg ttcaaagatc accaacagtg atcttaatca 720 caacattcgg actacctgct atagggtaga tcttggatac aaagtgctac tgacatcgca 780 ggaaaaggcg aaggcacatc gggaggagtt gtttgcgagc aatcgcaagc agcagcttga 840 gcacggtcgg cggctcaagg aggttgcgga agagtctgca caaacgctta tcatccagaa 900 ggaacagcgt gctagactca agaagcttga agccgggcta gcaaacctca gtaaggaaat 960 cctcagtctt cgtgtggaat acctgaagcg gaggccctta tcaagagaag acgttgctga 1020 gttggtgctc accatctcag agcaacccaa gatcatcgaa gagcaaacag agcagttgct 1080 ggagaaggtt aagctactgg tggagacggt acatcaggag gttgagacgg ttcaccacat 1140 ggkgaagcgg atcagctaat gagtatctct gagccagctt atacagcagc tctagctaag 1200 accaagacta tattcggtga atccggagag ggatttgtct ctgcaaatcc aggggtgaca 1260 actgcaacga aacagctcaa tacagttatt gagttgctgt tacagctgca cggcaaggtg 1320 aaagctttgg agagcactct ccaagagctt aaggaggatc tatccaagaa ggtggacaaa 1380 cccagcacat cgggtttgga aaagcagttc gacgacctca ccaagaggat cgaagggctg 1440 aaggcggcac caaagccaca gaaggtgaca agagggagtt tgaaggtggt agctaacccc 1500 tttgatctcc taaagaagat tcaatgacgc agcgcgtcag aaactcgggg tcatccacta 1560 tccttgatga tggtgcaata ctggatgatc agatccgaga atacagaagg gcacagcaca 1620 ttaaacataa catgcaaaga attgttgctg accccctgaa gtggatcaga acagaagatg 1680 aaaacccaag ggagaagaca ttggaaatgg taatgaatcc agaggtggaa cttcagaagt 1740 ccctcaagaa gcgagctaaa gcatttccag cagaggtcat ctacgcccca aggaaggaca 1800 caatacatca caaagtattt gtggggaaat ctagcatgga tatcatggtt attgatgata 1860 atcagctaga tatgtcctat atcaaggaag aatctttcga gaaacttgac caagcaggct 1920 taagatacat acatctcgga atactagctg ttagaataca gccgaataca gccccgcaca 1980 gtaattggtc agggaaattg gcatttatgg tgctaaggga cgtgagaaac tcacccccta 2040 caactcttgg tgcaatggag attgatctca gcaaaggagc acaaatgatc tatgtgctac 2100 ctaacttcat gtgcacaata agagatttct tccaagggat ccaactgaca gtcaagacga 2160 agggctatga aaattggcaa ggtgaagcaa atttacacct tgaaagaatg attaccgcaa 2220 gactgtccaa cacatcaaat gttggattcg agtacaaggt agatggtgtc acagcatacc 2280 tcaagaccaa tagtattaag gccattgatg cacaaaagga gtctgtgaag cacttgagag 2340 gaggtgaatg gaatgttcta ccttcaaaag tagaaattgc catggaacca actggctaca 2400 cacagcagca gaactatgac aggactacgt ccttcaggtt ctcaaactac caggccagta 2460 ccagcaagaa agcccccgtc tataatgacg aggatgaaga ggaaatggaa gctaatatgg 2520 cgatagttga aggtgaagaa gaagagtcag actatgaatg gctggagaga ttcctatcag 2580 agcactcttc gcagcaaaag atggtgggag aagctaattt ttccactgat gaagacgcca 2640 taatctctga atttttggac aacacgggtt atacagaaga agcctatccg gcaattgaag 2700 aagaataccc ggcctttaag agattagaag aattgatgaa gactaaggta gtagtccaag 2760 aaattgatga acagcctgaa gaaaagccaa cggaagtgaa gatggcagac actgcatctt 2820 catcaattat acaccctccg tcaatggact tagatggaaa cttgcctggc tatgcaccta 2880 atgaagagtc atcaaaagcc agatatggtg gatactctag aaaattcaag aatgaaagtg 2940 agtatttcaa tctaccatca gcaatggcta caagtggagc aatattagtg ttgactatgg 3000 ataattatgc aaaggagttt gaaagatgga aatccataaa cactaacatg cttgcgtctc 3060 agacctttga gacagcagaa gataagatca ccaggattga aaatcttctt ggtgaaacag 3120 aaaagctaat gttccagacc tggagaatgg cattcccaga agacttcaac acgttgaagg 3180 cacaagctat aggagtgaat ggaacatcca atgtctttgc tcaagtaaag agggtattac 3240 ttggagaagt tcctgagcaa ggaatgacta atactcaaga tgcagcatat aagaagatca 3300 agtcacttgt atgcacagag atgacatatc cagctattat gagatatatg gttggataca 3360 gaaatctagc agctagatca ggaagagctt gggtgaacaa tgagttgaca gtagaattct 3420 tcacaaagct tcctggcaag ctaggagaca aggtgaaggc tgcattcaag gagaagtacc 3480 cgggaatcga gaggcatgtg aacgctgcaa ttaggttcac atatgactat ctggaagaaa 3540 tatgtacaga aaacaatttc cagaagcagt tgagaagtct gaacttctgc aaaggcttcc 3600 cagtggtcaa tccccaaggt acaaggaaat ataacaagaa gtatggtact agaaaagcaa 3660 gaacttacag aggcaaacct cacagaactc atgtgagaat agagaagcaa aagtacctga 3720 agcaaagaga aaagaagtgc agatgcaatg tcttgcggct caccggatca tttgatgaaa 3780 gactgcaaga atccgatgag aaaaacaaga tagagttaat ctggccaatg aaactgacca 3840 ttccagatgg ctatgacatt gtgtcagtag gctatgatga gcaggatact gatgagatct 3900 actcagtatc agagaatgag gaaaaccaag ctcatcttgg tttgtcatat gaagatcccc 3960 agcttcccca gctaccgaag acattcgaag aatgggaaga ttattacaaa gatgattttg 4020 catacatggc tgaagtcaga gaatcctcgg atgatgaaga tcaaggacct ttcctagttg 4080 gtccaaaaga tggattcaga catcagatga aggtttcaag gaagcaatac atttgtgaac 4140 atgtatggaa tttccagaaa gatagaacaa gaccctgcaa aagatgtttg aagatagtaa 4200 gcaaaggtga atatgctcac tgtcatgagt gcaaggtcgg agtatgcata gaatgtgcag 4260 aatggctata caaggttaca ccaccagggc cagatgcaaa gaaggtgcac attccaacaa 4320 ctcatgaaag actggtcaga gagctactca ttgagaactc taagctcaaa agagagaagc 4380 aaatcttgat tgatgagctc aacaaagaaa tcaaggccag aattgagttg gagaaaggca 4440 aggagttagc tgttgaagaa tcatcttcga cagtaaatga agaaattgag atgtggaaat 4500 caagagctga aacatttgaa gctctttaca atgaagaatt ggcaaagaga gaaacagctg 4560 tatctgtgaa ggaagggttc tatcagttgc agatagatca cctgagaaaa gagttgagaa 4620 atctgaagca cgcatggaag aaaccaagtc gtagaatctg tgaagaagaa gaaatggagg 4680 aagtgtcttt aatggcatct tcaacaaaag atgaaatgtt cagatttcca gtagtgattg 4740 aagttccaga agttggaaaa gtccagttga cagcattatt ggacactgga gcaacaagat 4800 cttgtgtcaa tcaagcattt gttgagaaca aattgttgca agatacaaga ttcagagtga 4860 agatctcagg agtcaattcc acaacctacc tgagtaagca gatcaaggat ggagccaagc 4920 tatgggcagg aaatagctgg ttcaaactcc ccttaacata tgtaggagat atgcatatgg 4980 gagaaaagac gcagatgttg attggatgca acttcataca atctctagca ggaggagtga 5040 gattggaagg aagaacggta acgttctata agtacatctc cagcatccaa gcaaatgaat 5100 tcttacaagc agaagaagaa atcaatattg caacatctga acaggaattc ataaacaaga 5160 attttatgat caagaacaag aaattgctag aagaaatgaa agagcaaggt tatatgggtg 5220 aagatactct agcacactgg gagaaaaatc aagtcaagtg caaaattgaa gttatcaacc 5280 cagatttgat cataaaagac aagccaatca ctatgctgac aattcagacc aaggaaacaa 5340 tgaggcaaca tattgaagca ttgttagcaa gaaaggtgat caaaccatca acaagtcccc 5400 acagaacaaa agcatttatt gttgaatcag ggacatcaat tgatccaatt acaaagaagg 5460 aagttaggaa aagccaaaga ctggtattca actacaagag gctaaatgac aatacatggc 5520 cagaccagta ttctctacca gggataaatg ctcttctgaa gaatgtagca agagccaaga 5580 tattttcaaa atttgatttg aagagtggtt ttcaccaagt ggcaatggat ccagaaagta 5640 tcccgtggac ggctttcaca gcttacaatg agctgtatga atggttggta atgccattcg 5700 gactgaagaa tgcaccagca gtgttccaaa ggaagatgga taattgtttc agaggtaccg 5760 aaagattcat cgcagtatac attgatgaca tcttggtatt ctcaaactct gaagaggagc 5820 atgctgagca tttatgggca atgctacaaa tctgcaagaa gaatgggcta attttgagtc 5880 caacaaaata caagattgga gtgaagagag ttgattttct tggaagcaca attggtgaca 5940 accagttagc tgttcaagat cacattatct ccaaaattgc agattatgat gatgagaagc 6000 ttaagacaaa agaaggtctt aaatcctggc tagcaactct taactatgcc agaaatcaca 6060 taaaagatat gggcaagctt cttgggcctc tttatcccaa gacctctgag aaaggtgaaa 6120 gaagactgaa ttcagaagat tggaagttga tctcaaggat caagactatg gttagaagcc 6180 ttccaaagct aaccatatca ccagaggatg cctacatcat aattgagaca gatgcttgtg 6240 cgacaggatg gggtgcagtt agcaagtgga agaagaacaa aaatgatccc agaagcactg 6300 agcagatctg tagatatgca agtggtaaat ttgacaagcc taagggaact tgtgacgcag 6360 agatctatgg agtcatgaat gggcttgaga agatgagact cttttacctt gataaaagag 6420 aaatcacagt gaggactgat tctacagcta ttgaaagatt ttacaacaag agtgcagaac 6480 ataagccttc tgaaatcaga tggattaagt tcatggacta tatcactggc gctgggccaa 6540 caatagtcat tgaacacatt aaaggaaagc ataatgggct tgctgatctt ttgtcaagat 6600 tgaaagccaa gatggctgaa gccccctcac aggaaggaat gatgcttgct gaagcaatca 6660 gggaaatcat caactaccct gaacatccca tgacggagaa gcttttggaa tggggaaaga 6720 aaattgtccc tccatttcca aatcacaaaa gagatatgtt tgaaagaaca gagtctgcca 6780 tgatgattca tgaagaagca gttcttcgat gcgcatgcaa caagcctgca attctgctat 6840 gttctggaac atccagaaat ccaggcagaa agttttataa atgtgcatac gacaattgtt 6900 tttgttggta ttggcaggac gctattgaag aatacgttca agacaggatt gatgacttca 6960 tgaaggagaa ctttgatgac ttcggtcata aggaagtttc atcagatcca aaaccaagtg 7020 aaaggccaga gcttgacggc ctgcagaaaa taaaagaaga ctatgctacc attgatgagc 7080 caccagactg gaaagagttg ggggacacct gtgctgaaga agccacaacg acgcacacag 7140 gcatagagga agcactagat ctccttgacg taagcaatga cgatcaatgg agaaatacgt 7200 aagcaatgac gcgcggagca tggaggaccc attcagtgga gtatccactg agaagtttgc 7260 tttcggttgt gagtgcggtg tgagtgtgtt aggtgcggag cacctttgta cctggtttgc 7320 tttcggcgca tgtgccacct ttttctttgt cggccacgtt gcctttgctt agcttcgacg 7380 caaagcatag cgctcggctg aagtagtggg tgtgttggga gcctatataa ggcacccctt 7440 gtaagctctt acgatcatcg gtagttcacc agctgatcat ttgagcaaaa tttccagagc 7500 ttgaataaag aactactact ttccgctact ctgtacctat gatctgaagc ttgagaacaa 7560 gagcgacgac atagagagat cctaaaactt ttcgaagttt tccgggcgtc ccg 7613 //