ID JN377534; SV 1; circular; genomic DNA; STD; VRL; 7553 BP. XX AC JN377534; XX DT 05-MAR-2013 (Rel. 116, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Sugarcane bacilliform virus isolate Iscam, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7553 RX DOI; 10.1007/s11262-013-0890-6. RX PUBMED; 23430710. RA Karuppaiah R., Viswanathan R., Kumar V.G.; RT "Genetic diversity of Sugarcane bacilliform virus isolates infecting RT Saccharum spp. in India"; RL Virus Genes 46(3):505-516(2013). XX RN [2] RP 1-7553 RA Karuppaiah R., Viswanathan R., Ganesh Kumar V.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Plant Pathology, Division of Crop Protection, Sugarcane Breeding Institute, RL Sugarcane Breeding Institute Road, Seeranaickenpalayam, Coimbatore, Tamil RL Nadu 641 007, India XX DR MD5; 6c2005031700bbd63336fa7d50105a27. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7553 FT /organism="Sugarcane bacilliform virus" FT /host="Saccharum officinarum cultivar" FT /isolate="Iscam" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /isolation_source="leaf tissue lysate" FT /collected_by="Viswanathan, R" FT /collection_date="Mar-2008" FT /identified_by="Viswanathan, R" FT /note="genotype: Iscambine" FT /db_xref="taxon:12435" FT CDS 629..1186 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:M1F6K1" FT /protein_id="AFO11487.1" FT /translation="MKSEAEWETQFNAWKNSHMFENANQELILGTKISNSDLNHNLRTT FT CYRVDLGYKVLLTSQQKALEHRKELFSEARKHLVDQSRKLQLVADKAEQSLIIQKEQRA FT RLKKVEDGLSTLSREIHDLRVEYLKRRPLSKEDVAELVLTISEQPKFIEKQTELLLEQV FT KKLVEAVHEEVETVHHMVKRIS" FT CDS 1186..1557 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:M1F5M9" FT /protein_id="AFO11488.1" FT /translation="MSINEPAYAKALEKTKNILGEPGEGFVAGNASITTLTKQNNLTIE FT LLLILHGKIKSLEDKIQDLKEDLTKKADKPSSSGLDKQLDDLAKRIEGLRTGAAPVKAV FT ERGKLKVHANPFELLRKIQ" FT CDS 1554..7148 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H" FT /db_xref="GOA:M1F4N1" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:M1F4N1" FT /protein_id="AFO11489.1" FT /translation="MTQRVRGTGSSTITEDGALLDHQIRDYRRAQHAKHEAQRIASQAL FT ALLRVNSDDPREKTLEMLMQPDVELTRSMKKRARAFPAEVLYGPRSDDIHHKVFQGSSS FT QDIHLIDDNQLDMTFIKEETYEQLEQAGLRYIHLPLHAAGSGKLVFIVFRDIRDNPPRV FT LGAMEIDLSKGPQMVYVINSFMTTIKDFFHGIQLTVKVKGYEGWQGEANLHIERLITAR FT LSNTTNVYFKYKVEGVASFIKTKGIKAIEATKKSVKGIRGGQWNILPSKIEVVVIHPKK FT QHTANYDDATSFLFSTYEDATSSSPAEDNSDDDAEKTLFEEEEEEEEDDITFLDRFLSE FT YSTQQKEVGEDEFSPEEDQIISDFLGKTEEAYPAEIEEEYPALRRLEQIMKTKVVVQEI FT EEPSQPIEAWMSTSTGSSAMIPANMDMDGNIPGYAPAQEARGWDSGETSRRNYGGHSRK FT WKDESQFFNLPSAMATSGAMLVLTMGNYAKEFDRWQSINTNLLASQTFENAEDKITRIE FT NLLGETEKLMFQTWRMAFPTAFETMKAQATGTNGTQNVFSQMKRILLGEVPEQGTTNTQ FT DAAYKRIKSLVCQEMTYPAIMRYLVGYRNLAARSGRAWVNNELTDEFFTKLPGKLGDRV FT KEAFKKKYPGVERHVPAATRFTYDYLEEVCTENNFQKQLRSLNFCKGFPVVNPVGTRKY FT GKKYGTRKARSYRGKPHKSHVRIEKKKYLQQREKKCRCYVCGSPDHLMKDCKSPMKRQE FT RVNLANELDIPDGYDLVSVGYDESDIDEIYSVSENEECQAHLGLNEDEQLPKVPQTFEE FT WEEYYKEEFIMMADIEDSENSDEEKGPFLVGPKGSFRHQMEVSYKQYKCEHDWDFTRTR FT VKPCKRCLKTVTKGQYIYCRTCKITVCHECSEFCYNIKIEGAEAVKPPEKKSNYELLAK FT QLLIENSKLKMEKEILIEELNKEIKAHQETKKGKELYIEEGCPEVKSCYDALKSGAWIC FT ESLYKSEVKKNKASTCKRAERMCQRQIDHLRKELREVEATLEVNKVEESEDESEEVMMA FT SAVKDGMYRFPVIIEVPEVGKVQLTALLDTGATRSCINQAFIEEKFLQPTKFKVKIHGV FT NSVTKLDRQVKDGAKLWAGENWFRLPITYVGPMYMGEKTQMLIGCNFMQSLAGGVRLEG FT RTVTFYKYIASIKANEYLQAEAEEILVATSEQEFINKSFMSKNKRLLEEMKEQGYMGED FT TLAHWNKNQIKCKIELRNPDLIIKDKPQALLNIQKKEAMRKHIDALLERKVIRPSKSPH FT RTNAFIVESGTSIDPKTGKEIRGKPRLVFNYKRLNDNTWPDQYSLPGINALLKNVARAK FT IFSKFDLKSGFHQVAMDEESIPLTAFSAYNELYEWLVMPFGLKNAPAIFQRKMDQCFRG FT TEGFIAVYIDDILVFSEDEEQHAEHLWKMLQICKKNGLILSPSKYKIGVKKVDFLGSTI FT GNNQLAVQEHIIKKIAEFDDEKLKTKEGLKSWLATLNYARNHIKDMGKLLGPLYPKTSE FT KGERRLNSEDWKLINKIKTMVRTLPSLTIPPEDAYIIIETDACATGWGAVCKWKKYKED FT PRNTEQICRYASGKFDKPKGTCDAEIYGVMNGLEKMRLFYLDKREITVRTDSTAIERFY FT NKSGEHKPSEIRWIRFMDYITGAGPAIVIEHIKGKNNGLADILSRLKAKLAQEPTEERV FT LLTKAIREVIPYPDHPHIEQLREWGNKILHPFPTHKRDMFERTEPAFMLTEEPVLLCAC FT NKPAIQLVSRTSANPGRKFFKCAMHKCHCWYWADLIEEHIQDRIDEFLKNLEVLKTGGV FT QTMDEEPMKDVTKLKIEEQDFDAYQATPRAMSPTAAEDVLDLLDVSNDD" XX SQ Sequence 7553 BP; 2580 A; 1462 C; 1812 G; 1698 T; 1 other; tggtatcaga gcgaggtatg atttccgtat ccgttatgtt ctaaatttct aggataagga 60 gccgagggct ctgctgatga gtttaaggac aactagttgt gcaagtttca ttgcatgata 120 cgtcgaaagg ctgaaaacat cctaatatac tgtctattgt atggacaagt aagtggttrt 180 tctaggggag aacgttaatg aggggtaagc ttagttcatt ctgaatatca aggactgtga 240 ttgtagttga ccttaataat taagtgctga agggagtaag atctgggtag gtcaaaagta 300 cccgtcaagg caggaggccg ctcaagggga agagaaacct gacgatcaaa agctctttca 360 aacactgtct gttggtttta gctggatcaa gaactaccat ctgagactaa gattcatcac 420 taagaactgc ctacgcaagc cttcctgaat ccgcctctta gtagcaaact agtcaacagt 480 ataaggagaa actatatacc tgtaagactt aagtgcagaa agtaacctct ggaactggct 540 agaagtctag agactctgaa agcatcccaa ggtatccctt atctcctgtt agaacactgt 600 gacacagttt ttgtatctac cttgccgcat gaaatctgaa gccgagtggg aaacacagtt 660 taacgcttgg aaaaattccc atatgttcga aaacgctaac caagagctta ttcttggaac 720 aaagatctct aattctgatt taaatcataa cctgcgtact acttgctata gagtagatct 780 tggatacaaa gttctgctaa cctcgcagca gaaggcgctc gagcacagga aggagctgtt 840 ctctgaagcg agaaagcacc ttgttgatca aagcaggaag ctacaactcg tagcggacaa 900 agcggaacaa tcgctgatca ttcagaagga acagcgtgca cgtctgaaga aggttgaaga 960 cggcctatcg accctcagta gggagatcca cgaccttcgt gtggaatacc tgaagcggag 1020 gcctctatct aaggaagacg ttgctgaatt ggtgctcact atatctgagc aaccaaagtt 1080 tatcgagaag cagactgagc tgcttctaga gcaagtcaag aagctggttg aagctgtcca 1140 cgaagaagtt gagacggttc accacatggt gaagcggatc agctaatgag tatcaacgaa 1200 ccagcatacg caaaggctct cgaaaaaact aagaacatcc ttggagagcc aggagaaggt 1260 ttcgtcgcag gaaacgcaag catcacaacg ctcactaagc agaacaactt gaccatcgag 1320 ttactgctta tcctgcacgg gaagatcaag tccttggagg ataaaatcca agacttgaag 1380 gaggatctta ccaagaaggc ggacaagccc agctcatccg ggcttgacaa gcaactcgac 1440 gacctcgcca agaggatcga agggttgagg acaggagcag cacctgtcaa ggcggtggaa 1500 agagggaagc taaaggttca cgcgaacccc tttgagcttc tcaggaagat tcaatgactc 1560 aaagagtcag aggtactggc tccagtacca taacagaaga tggagcactc ttggatcatc 1620 agatccgaga ttacagaaga gcccaacatg caaaacatga ggctcagaga atcgcaagtc 1680 aagcacttgc tcttctacgg gttaactcag acgacccgag agagaagacc ctggaaatgc 1740 tcatgcagcc tgatgtggag ttgaccagga gcatgaagaa gagagccaga gctttcccag 1800 ctgaagtatt gtatggccca agaagtgatg atattcatca caaagttttt caagggagct 1860 ctagccagga tatccacctg attgatgata atcagcttga tatgactttt atcaaggagg 1920 agacatacga gcaattggag caggcaggac tccggtacat acatctacca ttacatgcag 1980 ccgggtcagg aaaactggtt ttcatagttt tccgtgacat cagagataac ccaccaagag 2040 tacttggagc tatggagatt gatctgagca aaggaccaca aatggtctat gtgatcaata 2100 gcttcatgac aacgataaag gatttctttc atggaatcca gctcacagtc aaggtgaagg 2160 gttatgaggg ttggcaagga gaggccaact tacacattga gaggttgata actgcaagat 2220 tatccaacac aaccaatgtg tatttcaagt acaaggttga aggagtggct agttttatca 2280 aaactaaagg tataaaagcc attgaagcca ctaagaagag tgtgaagggc atcagaggag 2340 gacaatggaa cattctccca tcaaaaatag aagtagtcgt catacatccc aagaagcagc 2400 atactgcaaa ttatgatgac gccacatctt ttttattctc aacctatgaa gatgccacct 2460 cttcatcacc agcagaggac aattcagatg atgatgcaga aaagacgctg tttgaagaag 2520 aagaagaaga ggaagaggat gacatcactt tcctcgaccg attcttatca gagtactcta 2580 cgcagcaaaa ggaggtggga gaagacgaat tttccccaga agaagaccag ataatttccg 2640 attttctcgg aaaaactgaa gaagcctacc ctgctgaaat tgaagaagag taccctgcac 2700 taagaagact tgaacaaata atgaagacaa aagttgttgt tcaagagatt gaagagccat 2760 cccagccaat tgaagcttgg atgagtacaa gcactggatc atcggctatg atccctgcaa 2820 acatggacat ggatggaaac atccctggct atgcaccagc acaagaagcc agaggatggg 2880 attcaggaga gactagcaga agaaactatg gcggacattc cagaaaatgg aaggacgaaa 2940 gtcaattctt taatcttcca tctgccatgg caacatctgg agcaatgcta gttcttacaa 3000 tgggaaatta tgcaaaggag tttgatagat ggcaatctat caacacaaat ttattagcat 3060 cccaaacatt tgaaaatgca gaagacaaga tcaccaggat tgagaatctt cttggtgaaa 3120 cagagaagtt aatgttccag acctggagaa tggccttccc aacggccttt gaaacaatga 3180 aagctcaagc cacaggaaca aatggaacac aaaatgtctt ctcacagatg aagaggatat 3240 tacttggaga ggttcctgaa caaggaacaa caaatacgca agatgcagcc tacaagagga 3300 taaaatctct tgtgtgccaa gaaatgacat atccagcaat aatgagatat ctagttggat 3360 atagaaattt ggctgccaga tcaggaagag cttgggttaa caatgagtta acagatgaat 3420 tcttcaccaa gctaccagga aagttaggag accgggtaaa agaagccttc aagaagaagt 3480 accccggagt tgagaggcat gtcccagcgg ccacaagatt cacatatgac tacctggaag 3540 aagtttgtac agaaaacaac ttccagaagc agctcagaag cctgaatttc tgcaagggct 3600 tcccagtggt caaccctgtc ggtacaagaa aatatggaaa gaaatatggg acaagaaaag 3660 caagatctta cagaggcaaa ccacacaagt ctcatgtaag aatagagaag aagaaatatc 3720 tgcagcaaag agagaagaag tgcagatgtt atgtctgtgg ttcaccagat cacctgatga 3780 aggactgcaa gagtcctatg aagagacaag aaagggtgaa cttagcaaat gagttggata 3840 tcccagatgg ctatgattta gtctctgttg gatatgatga atcagacatt gatgaaatct 3900 attcagtatc agagaacgaa gaatgtcagg cacatctagg cctgaatgaa gatgaacagc 3960 taccaaaggt tcctcaaacc tttgaagaat gggaagaata ttacaaagaa gagttcatca 4020 tgatggctga tattgaagat agtgaaaatt cagatgagga aaagggtcca tttcttgtag 4080 gaccaaaagg aagtttcagg caccaaatgg aagtctcata caagcaatac aagtgtgagc 4140 atgattggga ttttacaaga acaagggtaa aaccttgcaa aagatgcctg aagacagtga 4200 caaaggggca gtacatatac tgcaggacat gcaagatcac agtttgtcat gaatgctcag 4260 aattctgcta caatatcaaa atcgagggag cagaagcagt caagccccca gaaaagaagt 4320 caaactatga gctgctggcc aaacagttgc tgattgaaaa tagcaagctc aaaatggaga 4380 aagagattct tattgaagaa ctcaacaagg aaataaaagc tcatcaagaa acaaagaaag 4440 gaaaagagct ttacattgaa gaaggttgcc cggaagtgaa aagttgttat gatgcgttga 4500 agagtggggc gtggatatgt gaatccctat ataagagtga ggtgaagaag aacaaagcaa 4560 gtacatgcaa gagggcagaa aggatgtgcc agaggcagat cgaccatctc agaaaagaac 4620 tcagggaagt tgaggcaacc ctcgaggtaa acaaggtcga agaatctgaa gatgaatctg 4680 aagaagtgat gatggcttca gcagtcaaag atgggatgta cagatttcca gtaatcattg 4740 aagttccaga agttggaaag gtacaactca cagctctgtt ggatacaggt gcaacaaggt 4800 cctgtatcaa ccaagcattt attgaagaga agtttctcca acccacaaag ttcaaagtca 4860 agatacatgg ggtaaattca gtaacaaagc ttgacagaca agtcaaagat ggtgcaaagc 4920 tttgggcagg agaaaattgg ttcagactcc caatcacata tgttggacca atgtatatgg 4980 gagaaaagac gcagatgctc ataggatgca attttatgca atccttagca ggaggagttc 5040 ggctggaagg aaggacagta actttctaca aatacattgc cagcatcaag gcaaatgagt 5100 acttgcaagc cgaagcggaa gaaattcttg ttgctacctc agagcaagaa tttatcaaca 5160 aaagtttcat gagcaagaac aagaggcttc ttgaggagat gaaggagcaa ggctatatgg 5220 gtgaagatac cttagctcat tggaacaaga atcagatcaa gtgcaagatc gagttaagaa 5280 acccagatct gattatcaaa gacaagcctc aggcattgct aaacattcag aagaaagaag 5340 caatgaggaa gcatattgat gctctcctag aaagaaaagt catcaggcct tcaaagagtc 5400 ctcacaggac gaatgcattc attgtggagt cgggtacatc aattgacccg aagactggaa 5460 aagaaatcag aggaaaacca aggctggttt tcaattacaa aaggctgaat gacaacacat 5520 ggccagatca atactcttta cccggaatca atgctctgtt gaagaatgtt gcaagagcaa 5580 agattttctc aaagtttgat ttaaagagcg ggtttcatca agttgccatg gatgaagaaa 5640 gcattccact gacagcgttt tcagcataca atgagctgta tgaatggcta gtcatgccat 5700 ttggattaaa gaatgcacca gcaatctttc agaggaagat ggaccagtgt ttcagaggaa 5760 cagaagggtt catagccgta tacattgatg acatattggt tttctctgaa gatgaagaac 5820 agcatgctga acacttgtgg aagatgcttc aaatctgcaa gaagaatgga ctaatcctga 5880 gtccatcaaa atacaagata ggtgttaaga aggtggattt cttgggaagc acaattggta 5940 acaatcaatt agcagtccaa gagcacatta taaagaaaat tgcagagttt gatgatgaaa 6000 agctgaagac aaaggaaggt cttaaatcct ggctagcaac actaaactat gccagaaatc 6060 acatcaagga catgggtaaa cttcttggcc cattatatcc aaagacctca gaaaagggtg 6120 agcgaaggct caattcagaa gattggaagt tgatcaacaa gatcaagaca atggtgagga 6180 cacttccaag tctgactatt ccaccagaag atgcctacat tattattgaa acagatgcat 6240 gtgcaactgg atggggagca gtatgcaagt ggaagaaata caaggaagac ccaagaaata 6300 cagagcaaat ctgtaggtat gccagtggaa aatttgacaa gcccaaagga acatgtgatg 6360 cagagatcta tggggtcatg aatggcttag agaagatgag actgttctac ctggacaaaa 6420 gagagatcac agtcagaact gacagtactg caattgaaag gttctacaac aagagtggtg 6480 aacacaagcc ttctgaaatc agatggatca ggtttatgga ctatatcact ggtgcaggac 6540 cagcgatagt cattgaacac ataaaaggga agaacaatgg tttagctgac atcttgtcaa 6600 ggctcaaagc caaattagct caggaaccaa cggaagagag agtcctgctt acaaaagcca 6660 taagggaagt aattccttat ccagatcatc cacacattga gcagctcaga gaatggggaa 6720 acaaaattct gcatccattc cccactcaca agagggacat gttcgaaaga acagagccag 6780 cttttatgct tacagaagaa ccagttctgc tctgtgcatg caacaagcct gcaattcagt 6840 tagtgtccag aacatctgcc aacccaggca ggaagttctt caagtgcgca atgcacaaat 6900 gccattgctg gtactgggca gatctcattg aagaacacat tcaagacaga attgatgaat 6960 ttctcaagaa tcttgaagtt ctgaagaccg gaggcgtgca aacaatggac gaggaaccta 7020 tgaaggacgt caccaagctg aagatagaag agcaggactt cgatgcatac caggccacac 7080 caagggctat gtcgccaaca gccgcagaag atgtgctaga tctcctcgac gtaagcaatg 7140 acgattgagc aatgacgtat ggagcgtgga ggacccataa gagcactcag aaaggaatct 7200 caactttcgg tgtgtgagtg cgcatcctgt gcgatgcttt gtatctttta ttatgctgtg 7260 tgtgtctttt ggcatctgtg ccactttacc tttgtcggcc acgttgcctt tgcttagcat 7320 ctacgcaagc atagcgctcg gctggagtgt gttccctctg cctatataag gcatggttgt 7380 aagactctta cactcatcgg tagttcacca catgagtatt tgagtcaagt ttggcttgaa 7440 taataagaat tacacctttc cgctacattt cgcaactctt gatcctatga tccagtaggt 7500 tgagaacaag accgaagttc atagttgaga tccgtgtata ggggaccgtc ccg 7553 //