ID JN377533; SV 1; circular; genomic DNA; STD; VRL; 7826 BP. XX AC JN377533; XX DT 05-MAR-2013 (Rel. 116, Created) DT 11-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Sugarcane bacilliform virus isolate BO91, complete genome. XX KW . XX OS Sugarcane bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7826 RX DOI; 10.1007/s11262-013-0890-6. RX PUBMED; 23430710. RA Karuppaiah R., Viswanathan R., Kumar V.G.; RT "Genetic diversity of Sugarcane bacilliform virus isolates infecting RT Saccharum spp. in India"; RL Virus Genes 46(3):505-516(2013). XX RN [2] RP 1-7826 RA Karuppaiah R., Viswanathan R., Ganesh Kumar V.; RT ; RL Submitted (20-JUL-2011) to the INSDC. RL Plant Pathology, Division of Crop Protection, Sugarcane Breeding Institute, RL Sugarcane Breeding Institute Road, Seeranaickenpalayam, Coimbatore, Tamil RL Nadu 641 007, India XX DR MD5; fd01ada582be3dd44ca2959971081396. DR EuropePMC; PMC5496340; 28680479. XX FH Key Location/Qualifiers FH FT source 1..7826 FT /organism="Sugarcane bacilliform virus" FT /host="Saccharum hybrid cultivar BO 91" FT /isolate="BO91" FT /mol_type="genomic DNA" FT /country="India:Coimbatore" FT /isolation_source="leaf tissue lysate" FT /collected_by="Karuppaiah, R" FT /collection_date="Mar-2008" FT /identified_by="Viswanathan, R" FT /db_xref="taxon:12435" FT CDS 615..1172 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:M1F4M7" FT /protein_id="AFO11484.1" FT /translation="MKSEAEWETQFNTWKNSHTFENANQELILGTKISSLDLNHNIRTT FT CYRVDLGYKVLLTSQQKAQDHRTELFSVTRKHAVEHNKQLKLVGDKAERSLIIQKEQRA FT RLKRIEDGLSTLSREIHDLRVEYLKRRPLSKEDVAELVLTISEQPKFIEKQTELLLEQV FT KKLVEAVHEKIETVHHLVERIS" FT CDS 1172..1543 FT /codon_start=1 FT /product="DNA binding protein" FT /db_xref="UniProtKB/TrEMBL:E8Z4Z7" FT /protein_id="AFO11485.1" FT /translation="MSINEPVYAAALTKTKTIFGDQGEGFVTASPGATTAAKQLNTVIE FT LLLTLHGKVTALEGRLQDLKEDIAKKADKPSTSGLDKQFDDLTKKIEGLRSGSQPKQPV FT VRGKLKVVKDPFDLLKKIK" FT CDS 1540..7401 FT /codon_start=1 FT /product="polyprotein" FT /note="contains capsid protein, aspartyl proteinase, FT reverse transcriptase, and RNase H" FT /db_xref="GOA:M1F8P2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:M1F8P2" FT /protein_id="AFO11486.1" FT /translation="MTQRVRGTGSSTQLEDGTLLDDQIRDYRRGQHYKYAAQKKLSKAL FT SWTKTVDSSPSEQTLEMVMNPEIELEKSLKKRARAFPAEVIYSPRDDDVHHKVFIGQSS FT QDVMIVDDNQVDMTYIKEETFEKLEQAGLRYIHLGALAIRIQPLHAAWSGKLVFLVLRD FT CRNNPPTTLGAMEVDLSKGAQLIYVLPNFMLTIKDLYHGIQLSLKTKGYEGWQGEANLH FT LERLITGRLSNTSNVAFKYKIDGVTAYLKTNGIKAINAQKESTKKIRGGEWNVQPSKVE FT VVMEPRDMTQNQNFDGTTSFRFSNFQASASRPAPVYNDEDEVDMEAHMALCEDDEEETD FT QEWIDRYLSEYSTQQKMVGEIDEEEDIISNFLSNISQEEEAYPAEEIEEEYPALKRLEQ FT IMKTRVIVKELPEEQAQPEEAKMAGSEGSSAIWQPGTMDLDGNFPGYAPAQGAVGWDTT FT DSSKKKNYGGYSRKFKNESEFFNLPSAMATSGAILVLTMNNYAKEFDRWQSINTNLLAT FT QSFETADDKITRIENLLGETEKLMFQTWRMAFHTNFNTLKTQALGTNGTANVFAQVKRV FT LLGEVPEQGTTGVQDAAYKKIKSLVCTEMTYPALMRYMVGYRNLAARSGRAWANNEPPN FT EFFTKLPGKLGDKVKEAFVAKYPSVERHVPAAIRFTYDYLEDICTENNFQKQLRSLNFC FT KGFPVVNPVGTKKYGKKYGTRRARTYRGKPLGSNERIDTTRTHQQGNIGQWGKVPGPIN FT RGILDNGGKSDVTTLLDAIWPEKLDIPDNYDIVSVGFDEQDTEDIYSVSENEENQAHLG FT ISYEDPQLPTLPQNFEEWEEYYKDEFTFMAEAEDSSDDEKGPFLVGPKDGFRHQMMVSQ FT KQYKCLHDWEFQKDRTRPCKRCLKTVSKGEYAYCRTCKVGVCNECAQWCYKISAPSSSG FT EKKLPSVINYEKLAKQLLLENSKLKEEKKILIEELNKEIKTRQDLEKNKAVFVEETSSE FT VNDEIEMWKSKAELYEALYNEALSRPSDTSVREGLYQTQITYLTKELRQLEANMEVNQA FT VESEEEEVEAVSLMATAVKDQMFRFPVVIEVPEVGKVQLTALLDTGATRSCINKPFIED FT KMLQDTAFKVRISGVNSVTYLDKQVKEGAKLWAGDSWFKLPLTYVGNMHMGEKTQMLIG FT CNFIQSLAGGVRIEGRTVTFYKYISSIQANEFLQAEVEEINIATSEGGFIDKPFMSKNK FT KLIEEMKEQGYMGEDTLKHWEKNKVKCKIELINPDLIIKDKPITMLTIQTKEAMRKHVD FT ALLARGVIRKSNSPHRTNAFIVEYGTSVDPITKKEVRGKPRLVFNYKRLNDNTWPDQYS FT LPGINALLKNVARAKIFSKFDLKSGFHQVAMEPESIPLTAFTAYNELYEWLVMPFGLKN FT APAVFQRKMDDCFRGTERFIAVYIDDILVFSSSEDEHAEHLWIMLQICKKNGLILSPSK FT YKIGVKRVDFLGSTIGDNQLAVQEHIVSKITDFDEERLKTKEGLKSWLATLNYARNHIK FT DMGKLLGPLYPKTSEKGAKGLNSEDWKLISRIKTMVRSLPNLTIPPEDAYIIIETDACA FT TGWGAVCKWKKSKADPRSSELICRYASGKFDKPKGTCDAEIYGVMNGLEKMRLFYLDKR FT EITVRTDSAAIERFYNKSVEHKPSEIRWIRFMDYLTGAGPKIVIEHIKGKPIGRPDILC FT GKHNGLADILSRSKPTLLNPPPEEVILLPKAFKEIAYYDDHPQVPKLIELGKQIFYPFP FT KFKKDKFERTEHIMMASQEPTLLCGCRKPAIMYTSGTRLNPSRKFFKCAMNMCHCWYWA FT DLLEDYVQERIEDFMVMNFGKKMGIHTEASTSKVPANFKSLIDLKGEKDEYEEMLDNHR FT SSVIDRPRPSDEHFKPGYMYEDSLQKIKEDYASSSQEEPPWEDIEFWLCKEEDFTEDYT FT KLEDAVDLADASNDDQWRRS" XX SQ Sequence 7826 BP; 2649 A; 1517 C; 1802 G; 1858 T; 0 other; tggtatcaga gcgaggtatg atttacatat cagttatgtt ctaatccctt aggataggga 60 gccgagggct ctgctgatga gtttaaggac aactagctgt gcaagtttca atagacgata 120 cgtcgaaagg ttgaattcca gttgtcctat ttgcatcacg aactagtggt tgttctaggg 180 gagaacgtta atgcggggta agcttagttc attctgaaca tcaggttgac tctggtctag 240 ataacgttga tagttggtgc atagggagta agatctggca aggtaagagt acccgtcaag 300 gcaggtggcc gctcaagggg aagataaacc tagagatcaa agctctaatg cgatactatc 360 tatcagtttt atctggattg tatgctacaa tctgagacta agtttcatca ctaagacctc 420 ccttcgcagg ccttcctgaa tccgccacta tagtagtatc ctgcagataa gagaagctag 480 aactatatac ctgtaagact taagttcata tcggaacctt tggaactggc tagaagtcta 540 gagtctttga aagcatccca aggtaaaccc tatctgtgtt taagaacagt gatactgttt 600 gtatctaccg tcgcatgaaa tctgaagccg agtgggaaac ccagtttaac acttggaaaa 660 attctcatac cttcgaaaac gctaaccaag agcttattct tggaacaaaa atatctagtt 720 tagatttaaa tcacaatatc cgtactacct gctatagagt agatcttgga tacaaagttt 780 tgctaacctc gcagcaaaag gcgcaagatc acagaactga gttgttttcg gtaacacgaa 840 agcacgcagt tgagcacaac aagcagctca agcttgttgg tgataaagct gaacgatcgc 900 tgatcattca gaaggaacag cgcgcacgtc tgaagcgtat tgaagacggc ctatcaaccc 960 tcagtaggga aatccacgac cttcgtgtgg aatacctgaa gcggaggcct ttatcaaaag 1020 aagacgttgc agaattggtg ctcaccatat ctgaacaacc aaagttcatt gagaagcaga 1080 cagagctact tcttgaacaa gtcaagaaac tcgttgaagc ggtgcacgaa aaaattgaaa 1140 cggttcacca cctggtggaa cgtatcagct aatgagtatc aacgaacctg tatacgcagc 1200 agctcttacc aagaccaaga ctatcttcgg cgaccaagga gagggatttg tcactgcaag 1260 tccaggggcg acaactgcgg caaagcagct caacactgtc attgagcttc tgctgacgct 1320 gcacggcaag gtcactgctc ttgaaggaag gcttcaagac ctcaaggagg acattgctaa 1380 gaaggcggac aagcccagca cttcagggct tgataagcag ttcgacgatc tcaccaagaa 1440 gatcgaagga ctccgctccg gcagccagcc gaagcaaccg gtggttcgag gaaagttgaa 1500 agtggtcaaa gaccccttcg acctccttaa gaagataaaa tgacgcagcg cgtcagaggg 1560 acgggatcat ctactcagct tgaagatgga acacttctag atgatcagat ccgagattac 1620 cgaagagggc aacactataa atatgcagcc cagaagaaat tgtccaaggc tctcagttgg 1680 acaaagacgg tggacagcag cccaagtgag caaacacttg agatggtaat gaacccggaa 1740 atagagctgg aaaagtcatt gaagaagagg gcgcgagcct tcccagcaga agtcatctac 1800 tccccaagag atgatgatgt tcatcacaag gtgttcatag ggcagtctag ccaagacgtc 1860 atgatcgtcg acgacaatca agttgacatg acgtacatca aggaagagac ctttgagaag 1920 cttgagcaag ccggattaag atacatccat ctcggagcac tggctattag aatacagcct 1980 ctacatgcag catggtctgg aaagttggta tttctagtcc tcagagattg cagaaacaat 2040 ccaccaacaa cattgggagc tatggaagtg gatctgagca agggagcaca gttgatctac 2100 gtgctaccaa attttatgtt aactatcaaa gatctctatc atggtatcca gctctcactc 2160 aagaccaaag gctatgaagg ttggcaagga gaagcaaatc tacatctaga gagattgatc 2220 actggaagac tctctaacac ctcaaatgtt gcctttaagt ataagattga tggtgttacg 2280 gcttatctga aaactaatgg tataaaagcc attaatgcac agaaagagtc tacaaagaag 2340 ataagaggcg gtgaatggaa tgtgcaaccc tcaaaagtag aagttgtcat ggagcctaga 2400 gacatgacac agaaccagaa ctttgatgga acaacatcat tcaggttctc aaactttcaa 2460 gcatcagcta gtcgaccagc accagtatac aatgatgaag atgaagtcga catggaagct 2520 cacatggctc tatgtgagga tgatgaggag gaaaccgatc aggaatggat cgatcggtat 2580 ctatcagagt actctactca gcaaaagatg gtgggagaaa tagatgaaga agaagatata 2640 atttcaaact ttttgtcaaa catctctcaa gaagaagaag cctacccagc tgaagaaatt 2700 gaagaagagt acccggcttt gaaaagactc gagcaaatca tgaaaactcg agtaattgtc 2760 aaagagctgc cagaagaaca agctcagccg gaagaggcaa agatggctgg atctgaagga 2820 tcctctgcta tttggcaacc aggaacaatg gatttggatg gaaacttccc tggttatgca 2880 ccagctcaag gagcagttgg atgggataca actgactctt caaagaagaa gaattatggt 2940 ggttattcaa ggaaattcaa gaatgaatca gaattcttca atttaccatc agctatggca 3000 acatctggag ctatattggt tcttacaatg aacaattatg ccaaggagtt tgacagatgg 3060 caatctatca acacaaacct ccttgcaaca caaagctttg aaacagctga tgataagatc 3120 accagaatag aaaatctgtt aggagaaaca gagaagctga tgttccaaac atggcgaatg 3180 gcctttcata caaattttaa tactctgaag actcaagcat taggcaccaa tggtacagcg 3240 aatgtattcg ctcaagtcaa gagagtatta ttgggagaag ttcctgaaca aggaacaact 3300 ggagttcaag atgcagctta caagaagatc aagtctcttg tatgtacaga gatgacatat 3360 ccagcactca tgagatatat ggttggatac agaaatctag ctgcaagatc tggaagagca 3420 tgggcaaaca atgagcctcc aaatgagttt ttcactaagt tacctggcaa gctaggagat 3480 aaggtgaaag aagcttttgt ggcaaaatac ccaagtgtgg agagacatgt tccagctgca 3540 ataagattca catatgatta tcttgaagac atatgcactg agaacaactt ccagaaacaa 3600 ctgagaagtc tgaatttctg caaaggcttc cctgttgtca atccagtcgg taccaagaag 3660 tatggcaaga aatatggtac cagaagagca agaacttaca ggggaaaacc tctcggttcc 3720 aatgaaagaa ttgacacaac ccggacccat caacagggga atattggaca atgggggaaa 3780 gtccccggac ccatcaacag gggaatattg gacaatgggg gaaagtctga tgtaactact 3840 ttactggatg caatctggcc cgagaaactt gatataccag ataattatga tattgtctca 3900 gtgggatttg atgaacaaga tactgaagat atttattcag tgtcagaaaa tgaagaaaac 3960 caagctcacc ttggtatatc ttatgaagac ccacaactgc caactcttcc ccagaatttt 4020 gaagaatggg aagaatacta caaagatgag tttacattca tggcagaagc agaagattca 4080 tcagacgatg aaaagggacc attcctagtt ggacctaaag atggtttcag acaccagatg 4140 atggtttcac aaaaacaata caagtgtctg catgattggg aatttcagaa ggatagaact 4200 cgtccctgta aaagatgcct gaagacagta agtaaaggag aatatgctta ctgcagaaca 4260 tgcaaggttg gtgtttgcaa tgagtgtgca caatggtgtt acaagatctc tgcaccatcc 4320 tcatcaggag aaaagaagct gcctagtgtg atcaactatg agaagctggc taaacaattg 4380 ctattagaaa atagcaagct gaaggaagaa aagaagatcc ttatcgaaga actgaataag 4440 gaaatcaaaa ccagacaaga cttggaaaag aataaggcag tatttgttga agagacttca 4500 tcagaggtga atgatgagat tgaaatgtgg aagtctaaag ctgagttata tgaagcccta 4560 tacaatgaag ctctatcgcg gccaagcgat acatcagtaa gagaaggctt atatcagact 4620 cagatcacct acctcacaaa agaactcaga cagctagaag caaacatgga agttaatcaa 4680 gctgttgaat cagaagagga agaggtagaa gcagtatctc taatggctac agcagtaaaa 4740 gatcaaatgt tcagattccc agtggttatt gaagtaccag aagtcgggaa agttcagtta 4800 actgctctgc ttgatacagg cgctacaaga tcctgtatta acaagccatt cattgaagat 4860 aaaatgctcc aagatacagc attcaaagtc agaatatctg gagtaaattc agtcacctat 4920 cttgacaaac aggtcaaaga aggagccaag ctatgggcag gtgacagttg gtttaaactc 4980 cccttaacat atgttggaaa catgcatatg ggagagaaga ctcagatgct gataggctgt 5040 aacttcatac agtctttagc aggaggagta agaatagaag gaagaacagt aaccttctac 5100 aaatacatat ccagtatcca agccaatgaa tttctacaag cagaagttga ggaaatcaat 5160 attgctacat cagaaggagg attcattgac aagcctttca tgtccaagaa caagaagctt 5220 attgaagaaa tgaaagagca aggatatatg ggagaagata cattgaagca ttgggagaaa 5280 aataaggtga aatgcaaaat tgagcttatc aaccctgatc tcattatcaa agataagccc 5340 atcacaatgc ttacaattca gacgaaggaa gcaatgagga agcatgttga tgctctcctt 5400 gcaagaggag ttatcagaaa gagcaatagt ccacatcgga ctaatgcatt cattgtggag 5460 tatggaacat ctgtggaccc aatcactaag aaggaagtta gaggcaagcc gcgattggtg 5520 ttcaattaca agagactcaa tgataacaca tggcctgatc agtactctct accagggata 5580 aatgccctac tcaagaatgt tgctagagcc aagatattct ctaagtttga cctcaagagt 5640 ggctttcacc aagtagcaat ggaaccagag agtataccac ttacagcttt tacagcatac 5700 aatgagctgt atgaatggtt agtgatgcca tttggcctga agaatgcacc tgcagtattt 5760 caaaggaaga tggatgactg tttcagagga accgaaaggt tcatcgcagt ctatattgat 5820 gacattctgg tattttctag cagtgaagat gaacatgcag aacatttatg gattatgctg 5880 cagatatgca agaagaatgg gttaatctta agcccctcca aatataagat tggagtaaaa 5940 agagtggatt ttcttggttc aacaattggt gataatcagt tagcagtaca agaacatatt 6000 gtatcaaaaa taactgattt tgatgaagaa agactcaaga ccaaggaagg actgaagagc 6060 tggctagcaa ctctaaacta cgccagaaat cacatcaagg atatgggtaa acttcttgga 6120 cccttatatc ctaagacttc agagaaaggt gcaaagggat tgaactctga agattggaag 6180 cttatcagcc ggatcaaaac aatggtcaga agtctgccaa atctgacaat tccaccagaa 6240 gatgcttata ttattattga aacagatgca tgtgcaactg gttggggtgc agtttgcaag 6300 tggaagaaat ccaaagctga tccaagaagc tcagaattga tttgtcgata cgcaagtgga 6360 aaattcgaca agcccaaagg aacatgtgat gcagaaatct atggggtaat gaatggcctg 6420 gagaaaatga gactctttta tctcgataaa agagagatta cagtcagaac cgacagtgcg 6480 gccatagaaa ggttctacaa caaaagtgta gaacataaac cttcagaaat cagatggata 6540 agattcatgg actatctcac cggagctgga ccaaaaattg tgattgagca tatcaaagga 6600 aaacccattg gaaggcctga tattctctgc gggaagcaca atggcttagc ggatatcctc 6660 tcaagatcaa agccaacctt gctgaatccc ccacccgaag aagtgatttt gcttccgaaa 6720 gcattcaaag aaattgctta ttatgatgat cacccgcaag taccaaaact gatagaattg 6780 ggaaaacaaa ttttttatcc ttttccaaag tttaagaaag ataagtttga aagaactgag 6840 cacatcatga tggctagtca agagccaact ttgctatgtg gatgcaggaa gcctgcaatc 6900 atgtacacgt ctggtacaag gctcaaccca agcagaaaat tcttcaaatg tgcaatgaac 6960 atgtgccact gctggtactg ggcagatctt ttggaagatt atgtccaaga aagaattgaa 7020 gattttatgg ttatgaattt cggcaagaag atgggaattc atactgaagc aagtacatca 7080 aaagtcccgg caaattttaa atctcttata gatttaaaag gagaaaagga tgagtatgaa 7140 gaaatgttgg acaatcatcg ttcaagtgtt attgatcggc caagaccatc agatgaacac 7200 ttcaagcccg gatacatgta tgaagactct ctgcagaaga tcaaggaaga ctacgcaagc 7260 tcaagtcagg aggaaccacc atgggaggac atagaattct ggctatgcaa ggaagaagac 7320 ttcaccgaag actacacaaa gttagaagac gcagttgatc tcgctgacgc aagcaatgac 7380 gatcaatgga gaaggtcgta agcaatgacg cacggaagga caattatgga gcgtggagga 7440 cccataatgc actcagaagc gaatctcaac tttcggcgcc atacccaccg caccatgttc 7500 ggtgcctgta cctttttttg gtgtgtgtct ttttcggcat ctgtgccacc ttacctttgt 7560 cggccacgtt gcctttgctt agcatctacg caaagcatag cgctcggctg gtgtgtgttc 7620 cctctgccta tataaggcat ggttgtaaga ctcttacact catcggtagt tcaccacatg 7680 agtatttgag tcaagtttgg cttgaataat aaaactacta cacctttccg ctactatttc 7740 gcactcttga tcctatgatc cagtaggttg agaacaagac cgaagttcat agttgagatc 7800 cggttcgggg cgtcctcgtg gtaact 7826 //