ID   JN257715; SV 1; linear; genomic RNA; STD; VRL; 1776 BP.
XX
AC   JN257715;
XX
DT   02-NOV-2011 (Rel. 110, Created)
DT   14-MAY-2013 (Rel. 116, Last updated, Version 2)
XX
DE   Large cardamom chirke virus isolate ChK-1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Large cardamom chirke virus
OC   Viruses; Riboviria; Potyviridae; Macluravirus.
XX
RN   [1]
RP   1-1776
RA   Mandal B., Vijayanandraj S., Shilpi S., Pun K.B., Singh V., Pant R.P.,
RA   Jain R.K., Varadarasan S., Varma A.;
RT   "Disease distribution and characterisation of a new macluravirus associated
RT   with chirke disease of large cardamom";
RL   Ann. Appl. Biol. 160(3):225-236(2012).
XX
RN   [2]
RP   1-1776
RA   Vijayanandraj S., Shilpi S., Mandal B., Jain R.K.;
RT   ;
RL   Submitted (15-JUL-2011) to the INSDC.
RL   Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New
RL   Delhi, Delhi 110012, India
XX
DR   MD5; 0d74568cbaf5602cba4390b0e8acb48c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1776
FT                   /organism="Large cardamom chirke virus"
FT                   /host="Amomum subulatum (large cardamom)"
FT                   /isolate="ChK-1"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Kalimpong, West Bengal"
FT                   /isolation_source="infected leaves"
FT                   /collection_date="02-Apr-2011"
FT                   /proviral
FT                   /db_xref="taxon:1105028"
FT   CDS             <1..1575
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains NIb and coat protein"
FT                   /db_xref="GOA:G8H3M4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:G8H3M4"
FT                   /protein_id="AER38178.1"
FT                   /translation="GNNSGQPSTVVDNTLILMMSFFYAYISKTNDYLCEFIDDRMRFVC
FT                   NGDDNKFSLSPDFINEFGGDFSKEIEQLGLHYEFDELTDDITENPYMSLTMVRTPSGIG
FT                   FSLHPSRIVAIVQWIKKGDIIQATQAAFAAMVEAYNDPWLFSVLHLYLVWLLLEYKDAL
FT                   GFAKSNNIFGLVYMDPCQVHALHYGIGDERQPDDEENDASEDEEDDLTIYGTQQFQMDF
FT                   SGTSQQQGTSSTTGATISGAASGGTTPANTTQTAPLAPVTSGRGTGQITPPQVTPEQPA
FT                   ANDEDVDNGEDVQWRIPQIPRKMSHFNNPKAKGKRIWNSRVVKHIDADQYTQSSQLATT
FT                   AQFERWVEDVKKNLGSPNENDWQIYLTTWCLWCANNGTSSEVATNQNMEIHSGGQYATI
FT                   PISLFVEPAIRHGGFRKVMRHLSGVTSQILEQGEKMTAWGTKRGYTQLAMIPYAFDFCV
FT                   QTTGMPKTIREQLNQGKAAAIGSGYQRVMLLDGKIQGSKTSYERHVDTDVDEFEHGEKP
FT                   QARATLY"
XX
SQ   Sequence 1776 BP; 546 A; 357 C; 424 G; 449 T; 0 other;
     gggaataata gtggtcagcc aagcacagtg gttgataaca cactcatttt gatgatgtcc        60
     tttttctacg cctacatctc taagacaaac gattatcttt gtgagtttat tgatgacagg       120
     atgaggttcg tttgtaacgg tgatgataat aaattctcac tgtcaccaga ttttatcaat       180
     gaattcggtg gagatttctc aaaggagatt gagcagttgg ggctacatta cgaatttgat       240
     gaattgactg atgatatcac agagaaccct tacatgagct taactatggt cagaactcca       300
     tctgggattg gtttctcatt gcatccatca cgtattgttg caatcgtgca atggattaag       360
     aaaggggata taattcaagc aacacaggca gctttcgcag caatggttga agcgtataac       420
     gatccatggc tattcagtgt actgcactta taccttgtct ggttattgct tgagtataag       480
     gatgcacttg gatttgcaaa aagtaacaac atttttggtt tggtttacat ggacccctgc       540
     caagttcacg ctctccatta cggcattggc gatgaaaggc aacctgatga tgaagaaaat       600
     gatgctagtg aggatgagga ggatgactta acgatatatg gaacgcagca attccaaatg       660
     gacttttctg gcacgtcgca gcaacaaggc acatcaagca caactggtgc gacaatatct       720
     ggtgcagcta gtggtggaac cactcccgcg aacacaacac aaacagctcc attagcacca       780
     gttacgagtg ggcgaggaac aggccagatt acaccaccac aagtaacgcc ggaacaacca       840
     gcagcaaatg atgaggatgt tgataatggg gaagatgtac agtggagaat acctcaaata       900
     cctaggaaga tgagccattt caataaccca aaagctaaag ggaaacgaat ctggaacagt       960
     cgggttgtaa aacacatcga tgctgatcaa tatacgcaat cctcacagtt ggcaacaaca      1020
     gcacaatttg agagatgggt ggaggacgtc aagaagaatt taggttcacc aaatgagaac      1080
     gactggcaga tctatttaac gacgtggtgc ttatggtgtg caaacaatgg aacatcatca      1140
     gaagttgcga ccaaccaaaa catggaaata cattctggtg gccaatatgc aacgattcca      1200
     atctccttgt ttgtggaacc agcaattcga catgggggct ttcgaaaggt aatgcgacat      1260
     cttagtgggg taacatcaca aatacttgag cagggagaga agatgaccgc atggggcaca      1320
     aaaagagggt atactcagct cgcgatgata ccctacgctt tcgacttctg cgtacaaaca      1380
     actggtatgc ctaaaacaat tcgagagcag ctgaaccaag ggaaagctgc tgccataggc      1440
     tctggatacc agcgcgtgat gcttttggat ggaaagattc aaggtagcaa aacgagttat      1500
     gagagacacg tcgatactga tgtcgacgaa tttgagcatg gggagaaacc gcaagctcgc      1560
     gcaacactat actaagcaca gtggtgctag tatcgtgtga aaaataaaca aatagtttct      1620
     tatttgaaat ttccttttcc gttctagcgg tgtttatagg ttcaatggga gtttttgtgg      1680
     gttttctctc agcgcctagt aaccctcaac accatatcta agcttgctct ggatgtgcag      1740
     ctggcactct atgtgcttat cctacctccg tagaag                                1776
//