ID JN241632; SV 1; circular; genomic DNA; STD; VRL; 2624 BP. XX AC JN241632; XX DT 30-AUG-2011 (Rel. 109, Created) DT 30-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Tomato chlorotic leaf distortion virus-[Capsicum] segment DNA-A, complete DE sequence. XX KW . XX OS Tomato chlorotic leaf distortion virus-[Capsicum] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2624 RX PUBMED; 21853328. RA Zambrano K., Geraud-Pouey F., Chirinos D., Romay G., Marys E.; RT "Tomato chlorotic leaf distortion virus, a new bipartite begomovirus RT infecting Solanum lycopersicum and Capsicum chinense in Venezuela"; RL Arch. Virol. 156(12):2263-2266(2011). XX RN [2] RP 1-2624 RA Zambrano K.A., Chirinos D., Geraud F., Marys E.; RT ; RL Submitted (11-JUL-2011) to the INSDC. RL CMBC, IVIC, C/Panamericana km 11, Caracas, Caracas 1020-A, Venezuela XX DR MD5; dcd14d1a2b310ea85fa66d2563158893. DR EuropePMC; PMC6521247; 30987360. XX FH Key Location/Qualifiers FH FT source 1..2624 FT /organism="Tomato chlorotic leaf distortion FT virus-[Capsicum]" FT /segment="DNA-A" FT /host="Capsicum sp." FT /isolate="Capsicum:2004" FT /mol_type="genomic DNA" FT /country="Venezuela" FT /collection_date="2004" FT /db_xref="taxon:1077858" FT gene 192..947 FT /gene="av1" FT CDS 192..947 FT /codon_start=1 FT /gene="av1" FT /product="capsid protein" FT /db_xref="GOA:G3KGY4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G3KGY4" FT /protein_id="AEN03362.1" FT /translation="MPKRDLPWRAMPGTSKVSRNANYSPRARIGPIPNRALEWVNRPMY FT RKPRIYRTLRTPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(944..1342) FT /gene="ac3" FT CDS complement(944..1342) FT /codon_start=1 FT /gene="ac3" FT /product="Ren" FT /note="replication enhancer protein" FT /db_xref="GOA:G3KGY5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G3KGY5" FT /protein_id="AEN03363.1" FT /translation="MDSRTGEFINAPQAENGVYIWEITNPLYFKIYQVEDLPYTRTRVY FT HLQIRFNHNLRRALHLHKAYLNFQVWTTSLTASGKTYLFRFRHLVMLYLDQLGVISLNN FT VIRAVRFATDKAYVNHVLENHSJKFKLY" FT gene complement(1089..1493) FT /gene="ac2" FT CDS complement(1089..1493) FT /codon_start=1 FT /gene="ac2" FT /product="TrAP" FT /note="transactivator protein" FT /db_xref="GOA:G3KGY6" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G3KGY6" FT /protein_id="AEN03365.1" FT /translation="MLSSSHSTPPCIKKRHRQAKKKQPKKRAIRRRRLDWGCNCTAFVD FT LNCRDHGFTHRGIHQCASSREWRLYLGDNKSPIFQDLPGRGLAIHQNEGVPPPNTVQPQ FT PQESVASPQSLPEFPSLDDIPDSFWEDLFV" FT gene complement(1390..2490) FT /gene="ac1" FT CDS complement(1390..2490) FT /codon_start=1 FT /gene="ac1" FT /product="Rep protein" FT /note="protein of replication initiation" FT /db_xref="GOA:G3KGY7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G3KGY7" FT /protein_id="AEN03364.1" FT /translation="MPPPKRFRVNSKNYFLTYPQCSLTKEEALSQLQNLKTPVNKKFIK FT ICRELHENGEPHLHILIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGQQTVNDTYAKALNAASAEQALQIIKEEXPQHFFLQHH FT NLVANATRIFKKAPEPWVPPFRLSSFTNVPDEMQEWADNYFGLDSAARPERPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVSPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLNKEENASLRNWTLKNAVFITLD FT SPLYQEETQAGQEETAQEESHQEKAS" FT gene complement(2076..2333) FT /gene="ac4" FT CDS complement(2076..2333) FT /codon_start=1 FT /gene="ac4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G3KGY8" FT /protein_id="AEN03366.1" FT /translation="MGSLISTYSSSSRGNTSARITDSSIWSPQPGQHISIQTFRELNRA FT RTSSPTSTRMETPLNGENSRSTADLLEEVSKQSTIHMPRH" XX SQ Sequence 2624 BP; 637 A; 568 C; 651 G; 766 T; 2 other; accggatggc cgcgcgattt tttgcccccc ccgtacgcgc gccccgtctt taatttgagt 60 taaagcgaac atctttcgcg tcgtccaatg atattgcgtc tgactagcct agatattttc 120 aaaaacttgg gcgctaagtt tttgggctgt tataaattaa aggcttaatg ggccaatgtc 180 tttaattcaa aatgcctaag cgcgatctcc catggcgcgc gatgccggga acctcaaagg 240 tcagccgaaa tgcgaattac tctcctcgtg cacgcattgg cccaatcccc aacagggcct 300 tggaatgggt taacaggccc atgtacagaa agcccaggat ttatcgtacg ctaaggactc 360 ccgatgttcc aaaagggtgt gaaggccctt gtaaggtcca gtcttatgaa cagcggcacg 420 acatttcaca tgtcggtaag gtaatgtgca tctcagatgt gacacgtggt aatggtatta 480 cccaccgtgt cggtaagcgt ttttgtgtta agtccgtgta tattttaggg aagatatgga 540 tggatgagaa tatcaagctt aagaaccaca cgaacagtgt tatgttctgg ttggttaggg 600 accgtagacc gtatgggacg cctatggatt tcggacaggt gttcaatatg ttcgacaacg 660 agcctagtac tgctacggta aagaacgatc tacgtgatcg ttaccaggtt atgcacaagt 720 tttacgccaa ggtgacaggt ggacagtatg ccagcaatga acaggccctg gtcaagcgtt 780 tctggaaggt caacaattac gtggtgtaca accaccaaga ggctggcaaa tacgagaacc 840 atacggagaa tgctctgtta ttgtatatgg catgtacgca tgcctctaac cccgtgtatg 900 caacccttaa gattcgaatc tatttctacg attcgataat gaattaataa agtttgaatt 960 ttawtgaatg attttctagt acatgattga cgtacgcctt gtcggtggcg aatcgtacag 1020 ctctaattac attgttaagg gaaattacgc ctaattgatc caaatacaac ataactaggt 1080 gcctaaacct aaacaaataa gtcttcccag aagctgtcag ggatgtcgtc cagacttgga 1140 aattcaggta ggctttgtgg agatgcaacg ctctcctgag gttgtggttg aaccgtattt 1200 ggaggtggta caccctcgtt ctggtgtatg gcaagtcctc tacctggtaa atcttgaaat 1260 ataggggatt tgttatctcc cagatataaa cgccattctc tgcttgaggc gcattgatga 1320 attcccctgt gcgtgaatcc atggtctctg cagttgaggt ctacgaatgc tgtgcaattg 1380 cacccccagt caagacgcct tctcctgatg gctctcttct tgggctgttt cttcttggcc 1440 tgcctgtgtc tcttcttgat acagggggga gtcgagtgtg atgaagacag cattcttgag 1500 tgtccagttc ctgagggatg cgttttcttc tttgttcagg aattctttat agctggcacc 1560 ctcaccagga ttgcagagca cgattgatgg gatccctcct ttaatttgaa ctggcttccc 1620 gtacttgcaa tttgactgcc agtccttttg ggccccaagg agctctttcc agtgcttcaa 1680 ctttaagtat tgcggagaga cgtcatcaat gacgttatac tccacttcgt tcgagtaaac 1740 ctttgagttg aagtccagat gtccactcag ataattatgt gggcctaagg cacgagccca 1800 catcgtcttg cctgttctcg aatcaccctc aactatgaga cttattggac gttcaggccg 1860 cgcagcggaa tcaagcccaa aataattatc ggcccactct tgcatctcgt ccggaacgtt 1920 agtgaaagat gagagacgaa acggagggac ccatggttcc ggagcctttt tgaaaattct 1980 ggttgcgtta gcaaccaggt tgtggtgttg aaggaagaaa tgttggggmt gttcttcctt 2040 tatgatttgc agtgcttgct cggcagaggc agcattcaat gccttggcat atgtatcgtt 2100 gactgtttgc tgacctcctc tagcagatct gccgtcgatc tggaattctc cccattcaat 2160 ggtgtctcca tccttgtcga tgtaggactt gacgtccgag ctcgatttag ctccctgaat 2220 gtttggatgg aaatgtgctg accgggttgg ggagaccaga tcgaagaatc tgttattcgt 2280 gcactggtat ttcccctcga actggatgag tatgtggaga tgaggctccc cattctcgtg 2340 aagctctctg cagattttga tgaacttctt gttaactggg gtttttaggt tttgtaattg 2400 ggaaagtgcc tcttctttag taagagagca ctggggataa gtgaggaaat agtttttgga 2460 gttaactcta aatctcttag gcggtggcat tcttgtaata agagaggtgt acaccgattg 2520 agctctctca aacttgctga ttgtattggt gtattggggt gcaatatata ctagaaggtt 2580 cattaacgga tcgttgacac gtggcggcca tccgatataa tatt 2624 //