Dbfetch
ID JN225461; SV 1; linear; genomic RNA; STD; VRL; 3782 BP. XX AC JN225461; XX DT 07-DEC-2011 (Rel. 111, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Potato virus M isolate VIRUBRA 4/009 223K polyprotein gene, partial cds; DE and 25K protein, 12K protein, 7K protein, coat protein, and truncated 13K DE protein genes, complete cds. XX KW . XX OS Potato virus M OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3782 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Molecular analysis of Potato virus M isolates from the Czech Republic"; RL Unpublished. XX RN [2] RP 1-3782 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (07-JUL-2011) to the INSDC. RL Virology, IEB CAS, v. v. i., Na Karlovce 1a, Praha 16000, Czech Republic XX DR MD5; c58ae32faed5d75792183ae49dfb9f8f. XX FH Key Location/Qualifiers FH FT source 1..3782 FT /organism="Potato virus M" FT /host="Solanum tuberosum" FT /isolate="VIRUBRA 4/009" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="1980" FT /db_xref="taxon:12167" FT CDS <1..1226 FT /codon_start=3 FT /product="223K polyprotein" FT /db_xref="GOA:G9FXU4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G9FXU4" FT /protein_id="AEV23004.1" FT /translation="KQLGAKQLTNAAERFETIYPRHRASDTVTFLMAVKKRLSFSNPGK FT EKGKLHHAANYGKALLNEFLKRVPLKPNHNVKFMDEALWNFEEKKLSKSAATIENHAGR FT SCRDWPIDVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMKVHE FT VLPKNFYIHSGKGLEELDAWVKLGKFDGICTESDYEAFDASQDEFIMAFELELMKYLRL FT PRDLIEDYKFIKTSLGSKLGNFAIMRFSGEASTFPFNTLANMLFTFMRYHIRGDEYICF FT AGDDMCASRRLQPTKKFSHFLDKLKLKAKVQFVNKPTFCGWHLCPDGIYKKPQLVLERM FT CIAKEMNNLSNCIDNYAIEVAYAYKLGERAVNRMDEEEVAAFYNCVRIIVRNKHLIRSD FT VKKVFEVL" FT CDS 1269..1958 FT /codon_start=1 FT /product="25K protein" FT /db_xref="GOA:G9FXU5" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:G9FXU5" FT /protein_id="AEV23003.1" FT /translation="MDVLVDLLYKYKFERLNNKLAPPIVVHCVPGAGKSSLIRELIETD FT SRFCAYTAGVEDQPRLSGNWIRKWERQQTEGKLLVIDEYTLLTEVPRAFALFGDPIQSN FT SGSVQSADFVCSTSKRFGSATCAFLRDLGWDIWSSALDLVQVSDIYVKDPEGVVVYFEE FT EVGCLLRSHGVEAFNLSEIVGKTFEVVTFVTSENSPIINKAAAYQCMTRHRVALHILCP FT NATYTSA" FT CDS 1936..2265 FT /codon_start=1 FT /product="12K protein" FT /db_xref="GOA:G9FXU6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:G9FXU6" FT /protein_id="AEV23005.1" FT /translation="MPLTPPPDFTKVYISAALGAVLAAVVWLLSKNTLPAVGDRDHRLP FT HGGWYRDGTKSVFYNSPNKLNSIESRSASLLGQPWALVILLIVLIWASGRIGRTNYRAC FT GGLHP" FT CDS 2262..2453 FT /codon_start=1 FT /product="7K protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:G9FXU7" FT /protein_id="AEV23006.1" FT /translation="MIAYVLAGLCAFVVVLLVLNQGQSDCIVLITGESVRIQGCAINEH FT FGEIVPKLKPFGCASFRS" FT CDS 2475..3389 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G9FXU8" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:G9FXU8" FT /protein_id="AEV23007.1" FT /translation="MGDSTKKIEVAKEAGTXQXAKGKRPLPTAAEFEGDDTSGDASVRD FT AEVDEEASLERRLNSLREFLRERRGAIRVTNPGLETGRPRLKLADDMRPDPTNPYNRPS FT LEALSRIKPIAVSNNMATSEDMMRIYVNLEGLGVPTEYVQQVVIQAVLFCKDASSSVYL FT DPRGSFEWPRGAITADAVLAVMKKDAETLRRVCRLYAPVTWNHMLAHNSPPADWAAMGF FT QYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKVAHNTHKDIALRGANRNQVFSSL FT NAEVTGGMNGPELTRDFGKSNNK" FT CDS 3386..3712 FT /codon_start=1 FT /product="truncated 13K protein" FT /db_xref="GOA:G9FXU9" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:G9FXU9" FT /protein_id="AEV23008.1" FT /translation="MKCVTQTALLVARALYLHSGVFVFEIAYLISTCAGRPLGGGRSKY FT ARRRRAIAAGRCHRCYRLWPPTVFTVKCDNRSCVPGISYNVRVAQQIDEGVTEVIPSVI FT QREE" XX SQ Sequence 3782 BP; 1026 A; 764 C; 1029 G; 958 T; 5 other; ccaagcagtt gggcgcaaag cagctcacaa atgcagctga gcgttttgag actatatacc 60 caaggcatag ggcaagtgac actgtgacat tcttaatggc tgtgaagaaa cgcttgagct 120 tttccaatcc cggtaaagaa aaaggcaaac tgcatcatgc tgcgaattat gggaaagcct 180 tgttgaatga attcctcaag cgtgtgccgc taaagccgaa tcacaacgtg aaattcatgg 240 atgaagcact gtggaacttc gaggagaaga agctcagcaa gagtgcagcc accattgaga 300 accatgcagg gaggtcttgc agagattggc caatagatgt agcgcagatc ttctcaaaga 360 gccaactatg cacaaagttc gacaatagat ttcgagttgc aaaagcagcg caaagcatcg 420 tgtgtttcca acacgctgta ttgtgccgct ttgcaccgta catgaggtac atagagatga 480 aggtgcatga ggtgttgcca aagaattttt acatccattc tggaaagggc ttagaagaac 540 tcgaygcgtg ggtcaagctt gggaagttcg acgggatttg cacagaatcg gactacgaag 600 ccttcgacgc atcccaagat gaattcatta tggcttttga attggagcta atgaaatacc 660 tgaggttgcc acgggatttg atcgaggact acaagttcat caagacaagc ttgggatcta 720 aattgggcaa ctttgcaatc atgcgctttt ctggtgaggc cagcacattt ccgttcaata 780 cattggcaaa catgttattc accttcatga gataccacat tcgaggggat gaatacatat 840 gttttgctgg agacgatatg tgcgcttcaa gaaggttgca acccacaaaa aaattttcgc 900 atttcctgga caagctaaaa ctgaaggcga aagtacaatt cgtcaataaa cccacctttt 960 gtggttggca cttgtgtcca gacggcatat acaaaaaacc tcaactcgtg ctcgaaagga 1020 tgtgcatagc aaaagaaatg aataacttga gcaactgcat tgacaattat gccatagagg 1080 tggcatatgc ttacaaactg ggtgagaggg ccgtaaatag aatggatgaa gaggaggttg 1140 cagctttcta caactgtgtg cggataatag ttcggaataa gcatctgatt cgctcggatg 1200 taaagaaagt ctttgaagtg ctttgattgg ttagtgtagc ttaggtagtg ctattgtatt 1260 gaatatttat ggatgtgctt gtagatttgt tgtataagta taaatttgag cgtttgaata 1320 acaaattggc gccgccaatt gtcgtgcatt gtgtgcctgg agctgggaaa agtagcctaa 1380 ttcgggagct cattgaaacg gatagtaggt tttgcgctta cacagctggg gtggaggatc 1440 aaccaagact cagcggcaac tggattagga agtgggaaag gcagcaaaca gagggcaagc 1500 tgctagtgat tgacgagtac acactgttaa cagaggtgcc cagagcattc gcactattcg 1560 gcgatcccat tcaatcaaac tcagggtcag tccagtcagc tgattttgtg tgttcgacca 1620 gtaagagatt cggtagtgct acgtgcgctt tcttgaggga tctcggttgg gacatttgga 1680 gctcggcgct cgatctcgtg caggtatctg acatttacgt gaaggatcct gagggggtgg 1740 tggtgtactt cgaagaggag gttggttgct tgttgaggtc acacggagtg gaagccttta 1800 acttgagcga aatcgtggga aaaacgttcg aggtagttac ttttgtgact tctgagaatt 1860 caccgataat caataaggct gccgcgtatc agtgcatgac tagacacaga gtggcacttc 1920 acatattgtg tcctaatgcc acttacacct ccgcctgact tcaccaaggt ttacatctca 1980 gcggcgcttg gagcggttct agctgcagtg gtttggctat tgagyaaaaa caccttgcct 2040 gctgttggag acagggatca tagattgcca cacggcggtt ggtataggga cggaacaaaa 2100 tccgtgtttt acaactctcc caacaaactc aattccatag agagtcggag tgcgtccttg 2160 ctaggtcagc cttgggcttt ggtgattctc ttgattgtgc ttatttgggc aagtggaaga 2220 ataggcagaa caaattacag agcttgcggg gggcttcacc catgattgcg tatgttttag 2280 ctggattgtg tgcattcgtt gtggtgcttt tggtgcttaa ccagggacaa agtgattgca 2340 tcgtgttaat aacaggggag tcagtgcgaa ttcagggctg tgctataaat gagcactttg 2400 gtgaaatagt gcctaaactg aagccatttg gttgtgcttc ctttaggtca taaggctaat 2460 ccgatatagt gaacatggga gattcaacaa agaaaattga agttgccaaa gaagctggaa 2520 cgtyscaagm ggccaagggg aaacggccgc tacctacagc ggcagaattt gaaggtgatg 2580 atacctctgg agatgctagt gtgcgcgatg ctgaggtaga tgaggaagca tcactggagc 2640 gcagattgaa tagcttgcgt gagtttctac gtgagcgaag aggcgccata cgggtaacca 2700 accctggttt ggagactggc cgtccacgac tcaagctagc agacgacatg cgcccggatc 2760 cgacaaatcc ttacaacagg ccatcgcttg aggcactgag cagaattaaa cctatagctg 2820 tgtcaaacaa catggccaca tctgaggaca tgatgcgcat ctatgtcaat cttgaaggtt 2880 tgggggtgcc aactgagtac gtgcagcaag tggtgatcca agcggtgctt ttctgcaaag 2940 atgcaagtag ctcggtgtat ctcgatccac gcggctcctt cgaatggcca aggggtgcga 3000 tcactgcaga cgcggtgcta gctgtgatga agaaagacgc agagaccctg cgcagagtct 3060 gtaggctgta cgcgcccgtc acatggaatc atatgctggc acacaattct ccaccagcag 3120 actgggcggc tatgggtttc caatatgaag atagattcgc agcctttgac tgctttgact 3180 acgtggagaa cacagctgca gttcagccac tggaagggct gatacgccgt cccaccccaa 3240 gagagaaggt tgcgcataac actcacaagg acatagctct gaggggggcc aatcgcaatc 3300 aggtgtttag ttcgctcaat gctgaggtaa ctggaggtat gaatggtccc gagctcacta 3360 gggatttcgg caagtcgaat aataaatgaa gtgtgtgacc caaaccgcat tactcgtggc 3420 tagggctttg tatttgcatt ctggcgtgtt tgtatttgag atagcgtatt tgatttctac 3480 atgtgctggc cggccgcttg ggggcgggcg gtctaagtat gcgcgtcgca gacgtgcaat 3540 agctgctggg aggtgtcaca ggtgttaccg cctgtggccg cccactgtat ttactgttaa 3600 gtgtgataat aggagttgtg taccaggcat ctcttacaat gtgcgcgtgg cgcagcagat 3660 agatgaagga gtaaccgagg tgataccttc agtcatccaa agagaggagt agccatcaaa 3720 tcctatttaa tatataaagt gtgctactat aaataaaact aggtttttaa ctatttttag 3780 cc 3782 //