ID JN208136; SV 1; circular; genomic DNA; STD; VRL; 2738 BP. XX AC JN208136; XX DT 09-JAN-2012 (Rel. 111, Created) DT 09-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate India:Ash gourd:2011 segment DE DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RA Roy A., Panwar G., Gangopadhyay K., Prasad T.V.; RT "Detection and characterization of Tomato leaf curl New Delhi virus RT infecting Ash gourd in India"; RL Unpublished. XX RN [2] RP 1-2738 RA Roy A., Panwar G., Gangopadhyay K., Prasad T.V.; RT ; RL Submitted (05-JUL-2011) to the INSDC. RL Germplasm Evaluation Division, National Bureau of Plant Genetic Resources, RL New Delhi, India, Pusa, New Delhi, Delhi 110012, India XX DR MD5; 9222c51be05959d940a59ad575e3bce2. DR EuropePMC; PMC3650187; 24426262. XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Benincasa hispida (ash gourd)" FT /isolate="India:Ash gourd:2011" FT /mol_type="genomic DNA" FT /country="India:New Delhi" FT /collection_date="2011" FT /clone="16" FT /db_xref="taxon:223347" FT gene 41..427 FT /gene="AV3" FT CDS 41..427 FT /codon_start=1 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:H2CXR1" FT /protein_id="AEX15669.1" FT /translation="MKFKIHGLFSAWGRINRLAHQVWIHKHVGSIIARISRKRSWCKGH FT ASCKISPRDREELFLQHSRLRSCPRSHSCSPSKELWRSDQQISSFHRPHRRYPDVSTST FT APMELVQLSPLPASQKQRPGPTGR" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:H2CXR2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:H2CXR2" FT /protein_id="AEX15664.1" FT /translation="MWDPLLHEFPESVHGVRGMLAVKYLQEIEKNYSSNTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFTARIEGTPTSQLRQPLWSSCSCPHCRRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1053 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:H2CXR3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H2CXR3" FT /protein_id="AEX15665.1" FT /translation="MAKRPADIIISPPASKVPRRLNFDSPYGARAVVPIAGVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHANSVMFFLVRDRRPTGSPEDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT misc_feature complement(310..795) FT /gene="AC5" FT /note="similar to AC5 protein" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:H2CXR4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H2CXR4" FT /protein_id="AEX15666.1" FT /translation="MITDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSSPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVQTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:H2CXR5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:H2CXR5" FT /protein_id="AEX15663.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQPLPNTARHHQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:H2CXR6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:H2CXR6" FT /protein_id="AEX15667.1" FT /translation="MASPRRFRVNAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPSRSTHFHPNIQGAKSASDVKPYI FT DKDRDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKDDALNVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWAPRLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNPKYGKPVMIKGGIPTIFLCNKGANSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPAEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:H2CXR7" FT /protein_id="AEX15668.1" FT /translation="MGLRISMFSSNSKGNTSARITDSSTWFPLVGQHISIRTFRELNQH FT RTSNHTSTRTETS" XX SQ Sequence 2738 BP; 747 A; 585 C; 628 G; 778 T; 0 other; accgaatggc cgcgcaaatt tttaagtggg cccccaccca atgaaattca agatacatgg 60 cttatttagt gcgtgggggc gaataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtgtaagg ggcatgctag 180 ctgtaaaata tctccaagag atagagaaga actattcctc caacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagat 300 atcatcattt caccgcccgc atcgaaggta ccccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgccggc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcaatctttt gaatctaggc acgatgtgtc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatctgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atgctaacag tgtcatgttt tttttagttc gtgaccgtcg tcctacagga 720 tcccccgaag attttgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggcgggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctattttt atgattcggt aacaaattaa taaatatcaa gctttatatc atatgaagtc 1080 tgtacatcaa ttgttcgctc caatacatta tccaaaacat gataaactgc tcttattaca 1140 ttataaattc ctattacacc gagcatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgatgatg 1320 tcgtgctgtg ttaggaaggg gctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gtacgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacacccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgcggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatattcct tatagctgct gtttgcacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtacttg gggttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtgtggt cccaagcgag gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac accacattgg 1980 acgagaccca atcgacgagg tctgccggaa ctctgtcgaa ggatgaaatt gaaaaaggag 2040 aaacataaac ctcggaagga ggttgaaaaa tgcgatctaa attggtattt aaattgtgaa 2100 actgcagaac ataatccttt ggggctaatt cctttaatac gttcaacgca tcatctttat 2160 ttcccgtatt aatcgccttt gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctaggacgtc tcggtccttg tcgatgtatg 2280 gtttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gttgaccgac 2340 taggggaaac caagtcgaag aatctgttat tcttgcactg gtatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tcgacagatc ttgatgaatt 2460 tcttcgaagt cggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgtgagg aaatagtttt tggcatttac tctaaaacga cgtggggaag 2580 ccataaaacc tgtcgttttg attggcgtcc ctcaacttat ctatgtgatt ggtgtctgga 2640 gtcctatata taggtaagac accatatggc agaattgtaa ttttgaaaag aaaattactt 2700 taattcaaat tccctatagc ggccactcgt ctaatatt 2738 //