ID JN205460; SV 1; circular; genomic DNA; STD; VRL; 8265 BP. XX AC JN205460; XX DT 19-OCT-2011 (Rel. 110, Created) DT 14-MAR-2012 (Rel. 112, Last updated, Version 2) XX DE Blueberry red ringspot virus isolate BRRSV24, complete genome. XX KW . XX OS Blueberry red ringspot virus OC Viruses; Ortervirales; Caulimoviridae; Soymovirus. XX RN [1] RP 1-8265 RX DOI; 10.1007/s11262-011-0679-4. RX PUBMED; 21987074. RA Kalinowska E., Paduch-Cichal E., Chodorska M.; RT "Molecular characterization of polish blueberry red ringspot virus RT isolate"; RL Virus Genes 44(2):309-311(2012). XX RN [2] RP 1-8265 RA Kalinowska E., Paduch-Cichal E., Chodorska M.; RT ; RL Submitted (01-JUL-2011) to the INSDC. RL Department of Plant Pathology, Warsaw University of Life Sciences RL WULS-SGGW, Nowoursynowska 166, Warsaw 02-787, Poland XX DR MD5; 92299247706ae3b65005b8e3b48c98e6. DR EuropePMC; PMC3289790; 21987074. XX FH Key Location/Qualifiers FH FT source 1..8265 FT /organism="Blueberry red ringspot virus" FT /host="Vaccinium corymbosum cultivar Herbert" FT /isolate="BRRSV24" FT /mol_type="genomic DNA" FT /country="Poland" FT /collection_date="2010" FT /db_xref="taxon:172220" FT CDS 47..607 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF B" FT /db_xref="UniProtKB/TrEMBL:G5CKJ5" FT /protein_id="AEQ49586.1" FT /translation="MEIPDLSQLSNIVLTDNPGTNPGIPYKGKIISIPKNLLPEKTEYS FT LAYDGSHEQRILPMLRFITAILNNQTEILSFLSINQIKSGTVFTEKYFEEQKNNISIQL FT EQNRKNIFQKLEELKGLYDKKQDTIIQQSNRIINLITEIEHKKDLDEIKNTLKEIKKDL FT INNNNQKEVKELIESLKDISDRI" FT CDS 607..1200 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF C" FT /db_xref="UniProtKB/TrEMBL:G5CKJ6" FT /protein_id="AEQ49587.1" FT /translation="MTEGNGNGKLTEKIENMILKYEELEKVVKQVSQEIHEIKEQVEVE FT NDIKDFNESKYYNNTIRGNAKPTKEMIIDNKPEPCYQTDSPFPHLYHTFDPQLNNITDM FT LMYIIKNCCCKDKHEQKEKQPIIHPKILDEKDRQIKDLEEHIRELEEHRCITILDLKKY FT FGNRSSEDKKPIEYIEDQPRPSYRGRKPLWPQII" FT CDS 1182..2636 FT /codon_start=1 FT /product="coat protein" FT /note="ORF IV" FT /db_xref="GOA:G5CKJ7" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:G5CKJ7" FT /protein_id="AEQ49588.1" FT /translation="MASDNIEQQIEEIRNIMNNLKIEKTEENEIIFGNESENSDYDVRM FT DDVKQEPGTSNFEERWKRKRNPTYEYEPYNTDPFINAEDYGYKRGFYKDRRGKWKKPKE FT PGPVTGRLEDGILNLDCLTNGEELLKQWTAKQSLSTQIDATIRDMDAENYNKYLIYKTS FT GVVFNYIVDIDIPNISSMKNLEILEEIATKIYQEFLGGMSTQRATAADKHDQERVKYIL FT HKMKICDMCEFEEFYCQFIHYYYMLESSERSAYMNVFIQKLPYPLSKTINDEFQNQKNA FT NLIPDTLGGIAKVIRAYILLQCTREQEKMQLINVTKCCPKFEYIPHKFGCSPNSSRRGR FT RSTKKYSKYYKQRKYHTFKPWYKKRRYRMYKRKYQPKYRQRYWKNKSTQKYCPKGKKEC FT KCWICQEDGHYANECPNKDKRRDKVKLLEQLSQVNLEPIENDIISEEELWYLQTDEESE FT EENSSNESEQYFYQDNNQSEDDISIY" FT CDS 2572..4545 FT /codon_start=1 FT /product="reverse transcriptase" FT /note="ORF V" FT /db_xref="GOA:G5CKJ8" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:G5CKJ8" FT /protein_id="AEQ49589.1" FT /translation="MNQNNTFIKITISQKTILAYIDTGASLCLLPEYNLPKLLWKELKK FT PITIRVADKRELQITKVALMITILIEKRKFLVPTIYQFDSGVPMIIGNNFLRLYYPFCQ FT YLSYITLRCPKMINQKQEVIKIPIHHSSQLIKAKLLNLVTNIEEQLLMEQVNKILQERF FT SLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQRDIEEFKEDMEDLINKGLIRPSK FT SPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRSDYIMNRLKGKIWFST FT LDVKSAYWQLRLTEESKPLTAFSYPPQKHYEWNVLPMGLKQAPGIFQEFMNRSLHNLEH FT ICLVYVDDIIIFSEKDKNDHLSKVLQVLKRCEDEGIILSQPKAKIAHKEIDFFGLHISE FT GEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFIKDFAKYRKELQKKVSEK FT VPWKWTSYDTSQVQALKTLCQRLPKLYNAKESDLLIIATDASNGHWGAVMTAVTPVHIT FT NYGISLEDLFPKEQHTAQALSSQYQFFGTKDFVQKELLTKYASGTFTDTEKRYPIHELE FT TLAVLQTFRKWKVDLLSKPFILKTDSKYVTGFLRYKIKANYNQGRLIRWQLELSQFNYR FT TFYIKGSENYGPDTLTREWKEL" FT CDS 4530..5813 FT /codon_start=1 FT /product="transciptional activator" FT /note="ORF VI" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:G5CKJ9" FT /protein_id="AEQ49590.1" FT /translation="MEGAIKTLENQISTKEQSFQAKKQKLAELEAEINNLRSTLAILSG FT DSSKLSPSVPEEKKYSVLANIEEVNKQVALARSKKEYYVIFNGPMKGIYDEWHKAAPHI FT QGQSNIIHKKYPTIDEAKKALGGSYAAITNAPASPKDSKVLLGRFKVPSVPTIDSIQTI FT ESKMKALKVTQKKYNDYMEILYNYKDQHKLLHFYPKYRDTIGYKAIILPEASALTTYEL FT FKNGLADTIYFSDSKVFNDFPERIKQTINNYFKRFAKERPCYIKLFSTHPTFSIQGEED FT MPSYSVLQIGISNGDMPLMDTHHMPVPKHEELKQINLQNFIGVINHLSNLTANIKMLYK FT SDTMIIYSKATKEIEPDQEAVFIEFEKNFIENKIPKMTGEMKKELCNHMTKEDHPGHYC FT QYCPFIQQDDKKSASSEDEEKITMEVEE" FT CDS 6311..6772 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF VII" FT /db_xref="InterPro:IPR021109" FT /db_xref="UniProtKB/TrEMBL:G5CKK0" FT /protein_id="AEQ49591.1" FT /translation="MSNQITLLNNYYLQYYIIGIVNERIRLILIDTGAAMSFIKQSFVH FT QESLTPIQPYTVKGYLDHHTIGDKYLIEHSTNINVILSNTFNKTLLLKTTQTKADVLGA FT EVLFGMDFLDSFESYSITKEQLILREGTITHYIPRITVDTDTIRETLNY" FT CDS 6938..7876 FT /codon_start=1 FT /product="movement protein" FT /note="ORF I" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G5CKK1" FT /protein_id="AEQ49592.1" FT /translation="MKQMIIMGVDVQLERSKLKQIAKEGKLTLKSGQGIKSEGFLPSIT FT RKNILYLGKFTSEQPLEISTAVGQEALSLVNGKQIADRIAKMKQSDKEKIQYIHLSTIQ FT ILVKSTYASIDTPMDIIVIDNRIISKNKKEQVLGIIKGNLKYGVIKFDVSLHFAIPLVT FT KNLSQSIGILYKFHRQDLMEKGDYPLSITYSVGYALSNSHHSVDYIDQEIIHIDDLFKN FT TSTKLVTFEKKNENANDIFKAPPVRMIKPREEDISKPTITDITDPLKPTTSSSIQLAPP FT PNLHRKPESMQNLEKQIQELRRTVTNLNEKI" FT CDS 7873..8241 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF A" FT /db_xref="UniProtKB/TrEMBL:G5CKK2" FT /protein_id="AEQ49593.1" FT /translation="MSYQYRRGPYLKGSTKRCTLEDIEPMKEILSTTKKEILEQFPRSE FT ERSKIIGNLQGLIDYLVKRQKREAENPELSIQEKILKRLNSIEEKLEKSNSFSSIFDDL FT EETSHQTNQVNIPPSSEN" XX SQ Sequence 8265 BP; 3571 A; 1262 C; 1275 G; 2157 T; 0 other; ggtatcagag cttgagctac aaaatagttc aactcaaaat atcttaatgg aaattcccga 60 tttatcacaa ttatcaaata tagtactcac ggataaccca ggaaccaatc caggaatccc 120 ttataaagga aaaattataa gtatacctaa gaatctatta ccagaaaaaa ctgagtattc 180 attagcctat gatggatctc acgaacaacg aatattacct atgttaagat ttattactgc 240 tatattaaat aatcaaactg aaatattaag tttcttatct attaatcaaa taaagtctgg 300 aacagtattt acagaaaaat actttgaaga acaaaagaat aatatatcta tacagcttga 360 acaaaatcgt aaaaacatat tccaaaaact agaagagtta aaaggattat atgataaaaa 420 acaagatact attatacaac agtcaaatag aataataaac cttataaccg aaatagagca 480 taaaaaagac ttagacgaaa taaaaaatac tctcaaagaa ataaagaaag atttaatcaa 540 taataataac caaaaagaag ttaaagaatt aattgaaagt ttaaaagata taagtgatcg 600 aatataatga cagaaggaaa cggtaatgga aaattaaccg aaaaaataga gaatatgata 660 ttaaaatatg aagaattaga aaaagtagta aaacaagtaa gtcaagagat acatgaaata 720 aaagaacaag tagaagtcga aaacgacata aaagacttta atgaatcaaa atattataat 780 aatacaatta gaggaaacgc aaaacccacg aaagaaatga ttattgataa taaaccagaa 840 ccatgttatc aaaccgattc accttttcca catctatatc atacctttga tccacaatta 900 aataatataa ctgatatgct tatgtatata ataaaaaatt gctgttgcaa agataagcac 960 gaacaaaaag aaaaacaacc tataatacat cctaaaatat tagatgaaaa agatagacaa 1020 ataaaagatt tggaagaaca cataagagaa ttagaagaac acagatgtat aaccatttta 1080 gatttaaaga aatattttgg aaatagatct agtgaagata aaaagccaat agaatatatt 1140 gaagatcagc caagacctag ttatagagga agaaaaccat tatggcctca gataatatag 1200 aacaacaaat cgaagaaatt agaaatatta tgaataatct taaaatagaa aaaactgaag 1260 agaatgaaat aatatttgga aatgagtcag aaaatagtga ttatgatgta agaatggatg 1320 atgtaaaaca agaaccagga actagtaatt tcgaagaaag atggaagaga aaaagaaacc 1380 cgacctatga atatgaacca tataatacag acccatttat taatgcagaa gattatggat 1440 ataaaagagg attttataaa gatagaagag gtaaatggaa aaaacctaag gaaccaggtc 1500 cagtaacagg acgattagaa gatggaatat taaatctaga ttgtttaact aatggagaag 1560 aattattaaa acaatggaca gcaaaacaat cattatcaac acaaatagat gctaccattc 1620 gagatatgga tgcagaaaac tataataaat atttaatata taagacatca ggagtagtgt 1680 ttaattacat agtcgatata gacataccca acataagttc tatgaaaaac ttagaaatat 1740 tagaagaaat agctacgaaa atatatcaag aattcctagg aggaatgagc acgcagagag 1800 ccacagcggc cgataagcat gatcaagaaa gagtaaaata catattacat aaaatgaaaa 1860 tatgtgacat gtgtgaattc gaagaattct actgtcagtt tatacattat tattatatgt 1920 tagaatcatc agaacggagt gcatatatga atgtgtttat tcagaaatta ccatacccat 1980 tatcaaaaac gattaatgat gaatttcaga atcaaaagaa tgctaaccta ataccagata 2040 cattaggagg aatagctaaa gtaataagag catatatatt attacaatgt actagagaac 2100 aagaaaaaat gcaattaatc aatgtaacaa aatgttgccc aaaattcgaa tatataccac 2160 acaaatttgg ttgttcacca aattcttctc gaagggggag gagatcaact aaaaaatact 2220 caaaatacta taaacaacga aaatatcata cctttaaacc atggtataaa aagagaagat 2280 atcgtatgta taaaagaaaa taccaaccca aatatagaca aagatattgg aagaataaaa 2340 gtactcagaa atattgccct aaaggaaaaa aggaatgcaa gtgttggatc tgtcaagaag 2400 atggacacta tgcaaatgaa tgtcctaaca aagataaaag aagagataaa gtaaaattat 2460 tagaacaatt atcacaagta aatctcgaac ctatagaaaa tgatataata tcagaagaag 2520 aattatggta tttacaaact gatgaagagt cagaagaaga gaatagttca aatgaatcag 2580 aacaatactt ttatcaagat aacaatcagt cagaagacga tattagcata tattgacaca 2640 ggtgcatcat tgtgcctatt accagaatat aatctaccaa aattattatg gaaagaatta 2700 aagaaaccta ttactataag agttgctgat aaaagagaat tacaaatcac gaaagtagca 2760 ctcatgatta ctatactaat agagaaaagg aaattccttg tacctactat atatcaattt 2820 gattcaggag tacctatgat tataggaaat aactttttaa gattatatta cccattttgt 2880 caatatctat cctacataac attaagatgt cccaaaatga ttaatcagaa acaagaagta 2940 attaaaatac cgatacacca cagttcacaa ctaataaaag cgaagttact taacttagta 3000 acaaatatag aagaacaatt attaatggaa caagttaata aaatattaca agaaagattc 3060 tcactagact tactaggaga aaagaataaa aataaagaac taatagaaat aaaactaaaa 3120 gacccaaatg ctgaaatatt tgtaccaaat aatatacctt atactcaaag agatatagaa 3180 gagttcaaag aagatatgga agatctaata aataaaggat taattagacc aagtaaaagt 3240 ccacatagtg cgccagcgtt ctatgtagaa aatcattcag aaataaaaag agcaaaaaga 3300 agaatcgtaa taaattacaa agctatgaat gaagctacca ttggaacacc taaaacatta 3360 ccaagatcag attatataat gaatagatta aaaggaaaaa tatggttttc aacattagat 3420 gttaaatcag cctactggca attaagatta acagaagaat ctaaaccact aacagcattt 3480 agttatccac ctcaaaaaca ttacgaatgg aatgttttac ctatgggatt aaagcaagct 3540 ccaggtattt ttcaagaatt tatgaataga agtttacata atttagaaca catatgttta 3600 gtatatgttg atgatattat tatattttca gaaaaagata aaaatgatca tttatcaaaa 3660 gtattacaag ttttgaaaag atgtgaggat gaaggaatca tcttatcaca accaaaggca 3720 aaaatagcac ataaagaaat tgatttcttt ggattacata tttcagaagg cgaaataata 3780 ctacaaccac atattttgga aaaattagta ttatttcctg atgaaattga gaatcgaaag 3840 caattacaaa gatttcttgg aaatttaaat tatataagtg agaaaggatt tattaaagat 3900 tttgcaaaat atcgaaaaga gttgcaaaag aaagtatcag aaaaagtgcc atggaaatgg 3960 acttcctatg acacttctca agtgcaagca ctcaagacat tatgtcaacg attaccaaaa 4020 ttatacaatg ctaaagaatc agacttgctg ataatcgcta ccgatgctag taatggccat 4080 tggggagcag ttatgacagc agtcactcca gtacatatca ccaattatgg aatatccctt 4140 gaggatttat tcccgaaaga gcagcataca gcgcaagcat tatcatctca atatcagttc 4200 ttcggaacaa aggactttgt ccaaaaagaa ttacttacta aatatgctag tggaacattc 4260 acggataccg aaaaaagata tcctatccat gaattggaaa cattagcagt attacaaact 4320 tttcgaaaat ggaaagttga tttattatca aaacctttta ttttaaaaac agattcaaaa 4380 tatgttacag gatttttgag atacaaaata aaagccaatt ataatcaagg acggttgatt 4440 agatggcaac ttgaattatc acaattcaat tatcgaactt tttatataaa aggatcagaa 4500 aattatggcc ctgacaccct aaccagggaa tggaaggagc tataaaaaca ttggagaatc 4560 aaatcagcac caaagagcaa tcattccaag caaagaagca gaagctagca gaactcgaag 4620 cagagatcaa caatctcaga tcaacattag ccatactcag tggagatagc agcaaactat 4680 caccatcagt cccagaggaa aagaagtatt cagttctagc caacatcgaa gaagttaaca 4740 aacaagttgc attagccaga agcaagaagg aatattatgt catttttaat ggacccatga 4800 aagggatcta tgacgaatgg cataaagcag caccacacat tcaaggacaa tccaacatca 4860 ttcacaagaa atatccaacc attgacgaag caaagaaagc ccttggagga agctacgcag 4920 caatcactaa tgcaccagca tcaccaaaag attcaaaagt actattggga agatttaaag 4980 tcccttcagt accaacaatt gattcaattc aaactattga gtcaaaaatg aaagcattaa 5040 aggttactca gaagaaatat aatgattata tggagatcct ctacaactac aaggatcaac 5100 ataaattatt acatttctac cctaagtacc gagatacaat tggatacaaa gcaataatct 5160 tgcccgaagc atcagcatta accacttacg aattgttcaa aaatggatta gccgacacta 5220 tctatttttc ggactcaaaa gtattcaatg atttccctga aagaatcaag caaaccatca 5280 acaactattt caagaggttc gccaaggaaa gaccatgcta catcaaatta ttcagtactc 5340 atccaacctt cagcattcaa ggggaagaag acatgcccag ctattcagta ctacagattg 5400 gaataagcaa tggagatatg cctttaatgg acactcacca tatgccagta ccaaagcatg 5460 aggaactaaa gcaaatcaat ctacagaatt tcattggagt aattaatcat ttatctaatc 5520 tgacagcaaa cattaaaatg ctgtataaat cagatacaat gattatctat tccaaagcaa 5580 ctaaggagat tgaaccagat caagaagcag tatttattga atttgaaaag aattttattg 5640 aaaataaaat tccaaaaatg acgggggaga tgaagaaaga attatgcaat catatgacca 5700 aggaagatca tccaggacac tactgtcaat attgtccatt cattcagcag gatgataaga 5760 agtcagcatc aagtgaagac gaagaaaaga tcaccatgga agtggaggaa taaaacgtct 5820 tcatccatca ctatcaagat gtagacatca caatgtaaag ctacggctat tattagatgg 5880 cttagaatct acgccaatgt aaagtagatt cccttatctt ttattttgta agtttgaagt 5940 ccggagttga gttccgcctg tggaattcct ctatataagg acgccctatc ctatgtttgt 6000 agtcagagtg ttttccatat gtgaataaac gtttatcgtt ttaaaggttt cgcccttttc 6060 actctccagt gttgagttct tcgcaagaag ttctctgaag agcacatcct atccctatat 6120 accctatcct tacctatccg gtaattctat cctaaaagct tgttgcagaa acgaacttgc 6180 aggattcaag acaggattcg tcaaagaaca ggtatatgcc taaattatca ccatcagaac 6240 taatttacat ttgtgtactt atcaatttca ttatatcaat tttgttatta ctattttgtg 6300 ttattatagc atgtcaaatc aaattacttt gttaaataac tactatctac aatattatat 6360 tattggaatt gtaaacgaaa gaattagatt aatattaatt gatacaggag cagctatgtc 6420 ctttataaaa caatcattcg ttcatcaaga atcattaaca cctatccaac catatacagt 6480 aaaaggatat ttagatcatc atacaatagg agataaatat ttaatagaac attctaccaa 6540 tataaacgtc atactaagca acaccttcaa taaaacatta ttattaaaaa caactcaaac 6600 aaaagcagat gtattaggag ccgaagtttt atttggaatg gatttcttag atagctttga 6660 atcatactcg attacaaaag aacaactaat actgagagaa ggaactatta ctcattacat 6720 accaagaatc acagtagaca cagatactat aagagaaact ttgaattatt aaagatgtca 6780 tcacctatca tactagatca agcaggagta gtccaaaatc aagatcagaa tcaaatatca 6840 acagtcaata atcaaaatca gatgtcaaga atagaagatc aaaatcaatc agaagaaatc 6900 agacatatca atcaaatctt tgatattatc caatcaaatg aaacaaatga ttattatggg 6960 agttgatgtc caattagaaa gatctaaact aaaacaaata gcaaaagaag gaaaattaac 7020 attaaaatct ggacaaggaa taaaatcaga aggattttta ccatctatta ctagaaagaa 7080 tatattatat ttaggaaagt tcaccagcga gcaaccatta gaaattagta cagcagtagg 7140 acaagaagcc ttatcattag ttaatggaaa gcaaatagca gatagaatag caaaaatgaa 7200 acaatcagat aaagaaaaaa ttcagtatat acacttgagc acaatacaga tattagttaa 7260 atctacctat gcctcaatag atacacccat ggatattata gttattgata atagaattat 7320 ttctaaaaat aagaaagaac aagttctagg aataattaaa ggaaatctaa aatatggagt 7380 tattaagttt gacgtaagtt tacacttcgc cataccatta gtaactaaga atttaagtca 7440 atctatagga atattatata aattccacag acaagatctg atggaaaaag gagattaccc 7500 acttagtatc acctactccg taggatatgc attaagcaat agtcaccata gtgttgatta 7560 tatagatcaa gagattatac atatagatga cctatttaaa aataccagta ctaagttagt 7620 aacattcgaa aagaagaatg aaaacgctaa tgatatattt aaagcaccac cagtaagaat 7680 gatcaaacca agagaagagg atatatcaaa accaacaata acagatatca ctgacccatt 7740 gaaaccaact accagtagtt ctatccaact agcacctcca cctaacctac atagaaaacc 7800 agaaagtatg cagaacctag aaaagcaaat acaagaatta agaaggacag ttacaaacct 7860 caatgaaaaa atatgagtta tcaatacaga agaggaccat atctaaaagg aagcactaag 7920 agatgtactc tagaagatat agaacctatg aaggaaatat taagtactac taagaaagaa 7980 attctagaac aatttcctag atctgaagaa agatcaaaaa taataggaaa tttacaagga 8040 ttaattgatt atctagttaa aagacaaaaa cgagaagcag aaaatccgga attatccata 8100 caagaaaaga tattaaagag attgaacagc attgaagaaa aattagagaa gtctaattca 8160 ttttcatcaa tattcgatga tttagaagaa acttctcatc agacaaatca ggtcaatatt 8220 ccgccatcta gtgaaaacta gttagttgac cgcccggtcc gtttt 8265 //