ID JN205074; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC JN205074; XX DT 13-JUL-2012 (Rel. 113, Created) DT 13-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Turnip vein-clearing virus strain NZ-587, complete genome. XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6311 RA Chavan R.R., Pearson M.N., Cohen D., Blouin A.G.; RT "Characterization of the complete genome of a Turnip vein clearing virus RT isolate from Plantago major L. from New Zealand"; RL Unpublished. XX RN [2] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (04-JUL-2011) to the INSDC. RL School of Biological Sciences, University of Auckland, Thomas Building, RL Private Bag 92019, Symonds Street, Auckland, North Island 1142,, New RL Zealand XX DR MD5; 76988812833b7d0c293942ee8ee6137c. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Turnip vein-clearing virus" FT /host="Plantago major" FT /strain="NZ-587" FT /isolate="TP9 271.1" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collected_by="D. Cohen and A.G. Blouin" FT /collection_date="09-Feb-2010" FT /note="subgroup: 3" FT /db_xref="taxon:29272" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="RNA replicase" FT /note="contains RNA polymerase; translated by readthrough" FT /db_xref="GOA:I6NGM2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6NGM2" FT /protein_id="AEU04724.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLVATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK FT TCFAAFHFHENMLLECDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKRFQKFDRTANELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPDLYCTFTDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLVLVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT YQLQIDAVFKGTELVCSGRPSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTID FT IEDTASLVVEKFWDSYIGKEYSGTNEMTMTRESFSRWLSKQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSS FT KFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMNKVI FT KAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIIKYLSDKRLLRDLFFV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:I6NH26" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6NH26" FT /protein_id="AEU04725.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLVATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK FT TCFAAFHFHENMLLECDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKRFQKFDRTANELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPDLYCTFTDRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLVLVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:I6NG32" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I6NG32" FT /protein_id="AEU04726.1" FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFRKRKKKVEEKGVVS FT KYKYRPEKYAGPNSFNFKEENVLQHYEPESVPVFRSGVGRAHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F5A0S3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F5A0S3" FT /protein_id="AEU04727.1" FT /translation="MSYNITNPNQYQYFAAVWAEPIPMLNQCISALSQSYQTQAARDTV FT RQQFSNLLSAVVTPSQRFPETGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLSELSSGHGYMNRAEFEALLPWTTAPAT" XX SQ Sequence 6311 BP; 1827 A; 1208 C; 1569 G; 1707 T; 0 other; gtttagtttt attgcaacaa caacaacaaa ttacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacaat tgacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ttggtgaatg atttggcatc tcgtcgcgtt tatgataacg cggtcgagga 180 gctgaatgcc cgttccaggc gtcccaaggt ccatttctcc aaagcagtgt ctacggaaca 240 gacgctggtt gcgacaaacg cgtatccgga gttcgagatt tcctttactc atacgcaatc 300 ggcagtacac tccttagctg gaggccttcg atcgctcgag ttggagtatc tcatgatgca 360 agttccattc ggttctctca cgtacgatat cggcggtaac ttttctgcgc accttttcaa 420 agggcgtgac tacgttcact gctgtatgcc aaatctggat gtacgtgaca ttgctcgcca 480 cgagggacac aaagaagcta tttacagtta cgtaaatcgt ctgaaaaggc agcaacgtcc 540 tgtacctgaa taccagaggg cagctttcaa caactacgct gagaacccgc actttgtcca 600 ttgcgacaaa ccttttcaac agtgtgaatt gacgacggcg aatggtactg atacctacgc 660 tgtagctctc cacagcattt acgatatccc tgttgatgag ttcggtcctg cgctactcag 720 gaaaaatgtg aaaacttgtt tcgcggcctt ccacttccat gagaatatgc ttcttgagtg 780 tgatacagtc acactcgatg aaatcggagc tacctttcag agggccggtg ataacttgag 840 ttttttcttt cacaacgaga gcactctcaa ttatacccac agttttagta acataattaa 900 gtatgtgtgt aaaacgtttt ttcctgctag tcaacggttt gtgtatcata aggagttttt 960 agtcactaga gtcaacactt ggtattgtaa gtttacaaga gtggatacct ttactctttt 1020 ccgtggtgtg tatcataata atgtggactg cgaggagttt tacaaggcta tggacgacgc 1080 gtggcactac aaaaagacgt tagcaatgct taatgcagag agaactatct tcaaggataa 1140 cgcggcgcta aatttttggt ttccgaaagt gagagacatg gtcatcgtcc ctctctttga 1200 cgcttctatt acaactggaa gaatgtctag gagagaggtt atggtgaaca aggatttcgt 1260 ttacacggtt ctcaatcata taaaaacgta ccaagccaaa gctttaactt acgcaaatgt 1320 cttgtccttt gtggagtcta ttaggtctag agttattatt aacggtgtca ctgccaggtc 1380 tgaatgggac acagacaagg caattctagg tccattagca atgacatttt tccttataac 1440 aaagttgggt catgtgcagg atgaaataat cctgaaaagg ttccagaagt tcgatagaac 1500 cgccaatgag ctaatttgga caagtctctg cgatgccctg atgggggtta ttccctcggt 1560 caaagagaca cttgtacgcg gtggttttgt gaaagtggca gaacaggcct tagagataaa 1620 gattcccgat ctatactgta ccttcacaga caggttggta ctgcagtata agaaagcgga 1680 ggagttccaa tcgtgtgatc tttccaaacc tctagaagaa tccgagaagt actataacgc 1740 actgtccgag ctatcagtgc tcgagaatct cgattccttc gatttagagg cgtttaaaac 1800 tttgtgtcag cagaagaatg tggatccgga tatggcagca aaggtggttg tggcaatcat 1860 gaagtgtgaa ttgactttgc ctttcaagaa acctacagaa gaggaaatct cagagtcgct 1920 taagacagaa gaggggtcaa gcgcggagca taaggaagtg ttgagcttac aaaatgacgc 1980 tccattcccg tgtgtgaaaa atttagtaga gggttctgta ccagcatatg gaatgtgtcc 2040 taaaggtggt ggtttcgaca agttggatgt ggacattgcc gattttcatc tcaagagtgt 2100 agatgcagta aaaaggggaa ctatgatgtc agcggtatac acagggtcta ttaaagttca 2160 gcaaatgaag aactacatag actacttaag tgcatcgctg tcagctacag tctcaaacct 2220 ctgcaaggtg cttagagatg ttcatggcgt tgacccagag tcacaagaga aatctggagt 2280 gtgggacgtt agaagaggac gctggttact taaacctaat gctaaaagtc acgcgtgggg 2340 tgtggcagaa gacgccaacc acaagttggt tattgtgttg cttaactggg acgacggaaa 2400 gcctgtttgt gatgaaacat ggttcagggt ggctgtgtca agcgattcct tgatatactc 2460 ggatatgggt aaacttaaga cgcttacgtc ttgcagtcca aatggtgagc caccggaacc 2520 caacgccaaa gtaattttgg tcgatggtgt tcccggttgt ggaaaaacga aggagattat 2580 cgaaaaggta aacttctccg aggacttagt tttagtccct ggaaaggagg cttctaagat 2640 gatcatccga agggccaacc aggctggagt gataagagcg gataaggaca atgttaggac 2700 ggtagattcc ttcttgatgc atccttctag gagggtattc aagaggttat tcatcgatga 2760 aggactgatg ctgcacacag gttgtgtgaa tttcctgctg ctgctatctc aatgcgacgt 2820 tgcgtacgtg tatggggaca cacaacaaat tccgttcatt tgtagagtag cgaatttccc 2880 gtatcctgca cattttgcaa aacttgtcgc tgatgagaag gaagttagaa gagttacgct 2940 caggtgcccg gctgatgtca catatttcct taacaagaag tatgacgggg cggtgatgtg 3000 tactagcgca gtagagagat ccgtgaaggc agaagtggtg agagggaaag gcgctctgaa 3060 cccaataacc ttaccgttgg agggtaaagt tttgaccttt acgcaagctg acaagttcga 3120 gttactcgag aaaggttaca aggatgtgaa cacggtgcac gaggtgcaag gggagacgta 3180 cgagaagact gctattgttc ggttgacatc gactccgtta gaaatcatat cgagagcatc 3240 acctcatgtt ttggtggcgc tgacaagaca cactacgcgt tgtaaatatt acaccgtagt 3300 gttagaccca atggtgaatg tgatttcaga aatggagaag ttgtctaatt tccttctcga 3360 catgtatagg gttgaagcgg ggatccaata gcaattacag atcgatgcag tattcaaggg 3420 aacggaactt gtttgttcag gacgcccaag tggagactgg cgagatatgc aattttacta 3480 tgacactctt cttcccggta acagtactat tcttaatgaa tttgatgctg ttacgatgaa 3540 tttgagggat atttccttaa acgtcaaaga ttgcagaatc gacttctcca aatctgtgca 3600 acttcccaaa gagcaaccta ttttccttaa gcctaaaata agaactgcgg cggaaatgcc 3660 aagaactgca ggtttgctgg aaaatttggt cgccatgatc aaaaggaata tgaacgcgcc 3720 agatctgaca gggacaatcg acattgagga tactgcatct cttgtagttg aaaagttttg 3780 ggattcgtac attggtaaag agtacagcgg aacgaacgaa atgaccatga caagggaaag 3840 tttttctagg tggctctcca agcaagagtc atctacagtt ggtcagctag cggattttaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaaaagtc agccaaagca 3960 aaagttagac ttgagtattc aagatgaata tcctgcgttg cagacgatag tctaccattc 4020 aaaaaagatc aatgctattt tcggtcctat gttttcggaa cttacgagga tgttactcga 4080 gaggattgac tcttcgaagt ttctgttcta cactagaaag acacctgcgc agatagagga 4140 cttcttttct gacctagact caacccaggc aatggaaatt ctggaactcg acatttcgaa 4200 gtatgataag tcacagaacg agttccattg tgcggtagag tacaagattt gggaaaagct 4260 gggaattgac gagtggctag cggaggtatg gaaacaagga cacaggaaaa cgaccttgaa 4320 ggactatacg gccggaatca aaacgtgtct atggtatcaa aggaaaagtg gtgatgtgac 4380 aacctttatt ggtaacacta tcatcattgc agcctgtttg agctcaatga tccctatgaa 4440 caaagtgata aaggcggcct tttgtgggga cgatagcctt atttatattc ctaagggttt 4500 ggacttacct gatatccagg cgggcgcgaa cctcatgtgg aactttgagg ccaaactctt 4560 cagaaagaag tatggttact tctgcggtcg ttatgttatt caccatgata gaggagccat 4620 agtatattac gatccgctta aactaatatc taagttaggt tgtaaacata ttagagatgt 4680 tgttcattta gaagagttac gcgagtcctt gtgtgatgta gctagtaatt taaataattg 4740 tgcgtatttt tcacagttag atgaggccgt tgccgaggtt cataagaccg cggtaggcgg 4800 ttcgtttgct ttttgtagta taattaagta tttgtcagat aagagattgt tgagagattt 4860 gttctttgtt tgataatgtc gatagtttcg tacgaaccta aggtaagtga tttcctcaat 4920 ctttcgaaga aggaagagat cttaccgaaa gctctaacga ggttaaagac tgtgtctatt 4980 agtactaaag atattatatc tgttaaggag tccgagactt tgtgtgatat agatttacta 5040 atcaatgtac cattagataa gtatagatat gtgggtatcc taggagctgt tttcaccgga 5100 gagtggttgg taccagactt tgttaaaggt ggagtaacga taagtgtgat agacaagcgt 5160 ctggtgaact ccaaggagtg tgtgattggt acgtacagag ccgcagccaa gagcaaaagg 5220 ttccagttca aattagttcc aaattacttc gtgtccacgg cggacgctaa gaggaagcca 5280 tggcaggttc acgttcgtat tcaagatttg aagatcgagg cgggttggca gccattagct 5340 ctggaagtag tttcagttgc tatggttacc aataatgttg ttatgaaggg tttgagggag 5400 aaggtcgtcg caataaatga tccggacgtc gaaggtttcg aaggtgtggt tgacgaattc 5460 gtcgattcgg ttgcagcatt taaagcggtt gacaacttca ggaaaaggaa aaagaaggtt 5520 gaagaaaagg gtgtagtaag taagtataag tatagaccgg agaagtacgc cggtcctaat 5580 tcgtttaatt ttaaagaaga aaatgtctta caacattacg aacccgaatc agtaccagta 5640 tttcgcagcg gtgtgggcag agcccatacc aatgcttaac cagtgcatat cggcattgtc 5700 gcaatcgtac caaacacaag cagcgagaga cactgttaga cagcaattct caaacttgtt 5760 aagtgcggtt gtgacaccga gccagcggtt cccagaaaca gggtcccggg tgtatgttaa 5820 ctcggctgtt ataaagccgt tatacgaggc tcttatgaag tcttttgata ctagaaatag 5880 gatcatagag acggaagagg agtcacgccc gtcagcatcc gaagtagcta acgcaacaca 5940 gcgtgttgat gacgcgaccg ttgccattag gagtcaaatt cagcttctgc tgagtgagct 6000 ttctagtgga catggttata tgaatagggc agagttcgag gctttattgc catggactac 6060 tgcacctgct acttaggcgt agtgcgcacg atagcgcata gtgtttttct ctccacttaa 6120 atcgaagaga taaacttacg gtgtaaatcc gtaagggtgg cgtaaaccaa attacgcaat 6180 gttttgggtt ccatttaaat cgaaacccct tatttcctgg atcacctgtt aacgcacgtt 6240 cgacgtgtat tacagtggga ataagtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //