ID JN205073; SV 1; linear; genomic RNA; STD; VRL; 6311 BP. XX AC JN205073; XX DT 13-JUL-2012 (Rel. 113, Created) DT 13-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Turnip vein-clearing virus strain NZ-438, complete genome. XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6311 RA Chavan R.R., Pearson M.N., Cohen D., Blouin A.G.; RT "Characterization of the complete genome of a Turnip vein clearing virus RT isolate from Plantago major L. from New Zealand"; RL Unpublished. XX RN [2] RP 1-6311 RA Chavan R.R., Pearson M.N.; RT ; RL Submitted (03-JUL-2011) to the INSDC. RL School of Biological Sciences, University of Auckland, Thomas Building, RL Private Bag 92019, Symonds Street, Auckland, North Island 1142,, New RL Zealand XX DR MD5; bceb70c9bcb80355e728e6ecfbcb2f9d. XX FH Key Location/Qualifiers FH FT source 1..6311 FT /organism="Turnip vein-clearing virus" FT /host="Plantago major" FT /lab_host="Nicotiana occidentalis" FT /strain="NZ-438" FT /isolate="TP9 186-L22" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collected_by="D. Cohen and A.G. Blouin" FT /collection_date="22-Dec-2009" FT /note="subgroup: 3" FT /db_xref="taxon:29272" FT 5'UTR 1..67 FT CDS 68..4873 FT /codon_start=1 FT /transl_except=(pos:3389..3391,aa:Tyr) FT /product="RNA replicase" FT /note="contains RNA polymerase; translated by readthrough" FT /db_xref="GOA:I6NG82" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6NG82" FT /protein_id="AEU04723.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKDAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT YQLQIDAVFKGTNLFVQTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNV FT KDCRIDFSKSVQLPKEQPIFLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPHLTGTID FT IEDTASLVAEKFWDAYIDKEFSGTEKMSLTRESFSRWLSKQESSTVGQLADFNFVDLPA FT VDEYKHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSS FT KFLFYTRKTPAQIEDFFSDLDSTQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDE FT WLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVI FT KAAFCGDDSLIYIPKGLDLPDIQAGANLMWNFEAKLFRKKYGYFCGRYVIHHDRGAIVY FT YDPLKLISKLGCKHIRDIVHLEELRESLCDVASNLNNCAYFSQLDEAVAEVHKTAVGGS FT FAFCSIIKYLSDKRLFRDLFSV" FT CDS 68..3391 FT /codon_start=1 FT /product="RNA replicase component" FT /note="contains capping methyltransferase and RNA helicase FT domains" FT /db_xref="GOA:I6NH24" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6NH24" FT /protein_id="AEU04720.1" FT /translation="MAQFQQTIDMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKAVSTEQTLIATNAYPEFEISFTHTQSAVHSLAGGLRSLELEYLMMQVPFGSL FT TYDIGGNFSAHLFKGRDYVHCCMPNLDVRDIARHEGHKDAIYSYVNRLKRQQRPVPEYQ FT RAAFNNYAENPHFVHCDKPFQQCELTTANGTDTYAVALHSIYDIPVDEFGPALLRKNVK FT TCFAAFHFHENMLLDCDTVTLDEIGATFQRAGDNLSFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRFVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYHNNVDCEEFYKAMDDAWH FT YKKTLAMLNAERTIFKDNAALNFWFPKVRDMVIVPLFDASITTGRMSRREVMVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLIT FT KLGHVQDEIILKKFQKFDRTTNELIWTSLCDALMGVIPSVKETLVRGGFVKVAEQALEI FT KIPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLEAF FT KTLCQQKNVDPDMAAKVVVAIMKCELTLPFKKPTEEEISESLKTEEGSSAEHKEVLSLQ FT NDAPFPCVKNLVEGSVPAYGMCPKGGGFDKLDVDIADFHLKSVDAVKRGTMMSAVYTGS FT IKVQQMKNYIDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAK FT SHAWGVAEDANHKLVIVLLNWDDGKPVCDETWFRVAVSSDSLIYSDMGKLKTLTSCSPN FT GEPPEPNAKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRA FT DKDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPF FT ICRVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYDGAVMCTSAVERSVKAE FT VVRGKGALNPITLPLEGKVLTFTQADKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTS FT TPLEIISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGIQ FT " FT CDS 4876..5679 FT /codon_start=1 FT /product="movement protein" FT /note="intercellular transport of virus" FT /db_xref="GOA:I6NHH2" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:I6NHH2" FT /protein_id="AEU04722.1" FT /translation="MSIVSYEPKVSDFLNLSKKEEILPKALTRLKTVSISTKDIISVKE FT SETLCDIDLLINVPLDKYRYVGILGAVFTGEWLVPDFVKGGVTISVIDKRLVNSKECVI FT GTYRAAAKSKRFQFKLVPNYFVSTADAKRKPWQVHVRIQDLKIEAGWQPLALEVVSVAM FT VTNNVVMKGLREKVVAINDPDVEGFEGVVDEFVDSVAAFKAVDNFRKRKKKVEEKGVVR FT KYKYRPEKYAGPNSFNLKEENVLQDYEPESVPVFRSGVGRAHTNA" FT CDS 5603..6076 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:F5A0S1" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:F5A0S1" FT /protein_id="AEU04721.1" FT /translation="MSYKITNPNQYQYFAAVWAEPIPMLNQCISALSQSYQTQAARDTV FT RQQFSNLLSAVVTPSQRFPETGSRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLSELSSGHGYMNRAEFEALLPWTTAPAT" FT 3'UTR 6077..6311 XX SQ Sequence 6311 BP; 1842 A; 1215 C; 1555 G; 1699 T; 0 other; gtttagtttt attgcaacaa caacaacaaa ttacaataac aacaaacaaa atacaaacaa 60 caacaacatg gcacaatttc aacaaacaat tgacatgcaa actctccaag ctgctgcggg 120 acgcaacagt ttggtgaatg atttggcatc tcgtcgcgtt tatgataacg cggtcgagga 180 gctgaatgcc cgttccaggc gtcccaaggt ccatttctcc aaagcagtgt ctacggaaca 240 gacgctgatt gcgacaaacg cgtatccgga gttcgagatt tcctttactc atacgcaatc 300 ggcagtacac tccttagctg gaggccttcg atcgctcgaa ttggagtatc tcatgatgca 360 agttccattc ggttctctca cgtacgatat cggcggtaac ttttctgcgc acctttttaa 420 agggcgtgac tacgttcact gctgtatgcc aaatctggat gtacgtgaca ttgctcgcca 480 cgagggacac aaagatgcta tttacagtta cgtaaatcgt ctgaaaaggc agcaacgtcc 540 tgtacctgaa taccagaggg cagctttcaa caactacgct gagaacccgc actttgtcca 600 ttgcgacaaa ccttttcaac agtgtgaatt gacgacggcg aatggtactg atacctacgc 660 tgtagctctc cacagcattt acgatatccc tgttgatgag ttcggtcctg cgctactcag 720 gaaaaatgtg aaaacttgtt tcgcggcctt ccatttccat gagaatatgc ttcttgattg 780 tgatacagtc acattagatg aaatcggagc tacatttcag agggccggtg acaacttgag 840 ttttttcttt cacaacgaga gcactctaaa ttatacccac agttttagta acataattaa 900 gtatgtgtgt aaaacgtttt tccctgctag tcaacggttt gtgtatcata aggagttttt 960 agtcactaga gtcaacactt ggtactgtaa gtttacaaga gtggatactt ttactctttt 1020 ccgtggtgtg tatcataata atgtggactg cgaggagttt tacaaggcta tggacgacgc 1080 gtggcactac aaaaagacgt tagcaatgct taatgcagag agaactatct tcaaggataa 1140 cgcggcgctg aatttttggt ttccgaaagt gagagacatg gtcatcgtcc cactctttga 1200 cgcttctatt acaactggaa gaatgtctag gagagaggtt atggtgaaca aggatttcgt 1260 ttacacggtc ctcaatcata taaaaacgta ccaagccaaa gctttaactt acgcaaatgt 1320 cctgtccttt gtggagtcta ttaggtctag agttattatt aacggtgtca ctgccaggtc 1380 tgaatgggac acagacaagg caattctagg tccattagca atgacatttt tccttataac 1440 aaagttaggt catgtgcagg atgaaataat cctgaaaaag ttccagaagt tcgatagaac 1500 caccaatgag ctgatttgga caagtctctg cgatgccctg atgggggtta ttccctcggt 1560 caaagagaca cttgtacgcg gtggttttgt gaaagtggca gaacaggcct tagagataaa 1620 gattcccgag ctatactgta ccttcgcaga caggttggta ctgcagtata agaaagcgga 1680 ggagttccaa tcgtgtgatc tttccaaacc tctagaagaa tccgagaagt actataacgc 1740 actatccgag ctatcagtgc tcgagaatct cgattccttc gacttagagg cgtttaagac 1800 tttgtgtcag cagaagaatg tggatccgga tatggcagca aaggtggttg tggcaatcat 1860 gaagtgtgaa ttgactttgc ctttcaagaa acctacagaa gaggaaatct cagagtcgct 1920 taagacagaa gaggggtcaa gcgcggagca taaagaagtg ttgagcttac aaaatgacgc 1980 tccattcccg tgtgtgaaaa atttagtaga gggttcagta ccggcatatg gaatgtgtcc 2040 taaaggtggt ggtttcgaca agttggatgt ggacattgcc gattttcatc tcaagagtgt 2100 agatgcagta aaaaggggaa ctatgatgtc agcggtatac acagggtcta ttaaagttca 2160 gcaaatgaag aactacatag actacttaag tgcgtcgctg tcagctacag tctcaaacct 2220 ctgcaaggtg cttagagatg ttcacggcgt tgacccagag tcacaagaga aatctggagt 2280 gtgggacgtt agaagaggac gctggttact taaacctaat gctaaaagtc acgcgtgggg 2340 tgtggcagaa gacgccaacc acaagttggt tattgtgttg ctcaactggg acgacggaaa 2400 gcctgtttgt gatgaaacat ggttcagggt ggctgtgtca agcgattcct tgatatactc 2460 ggatatggga aaacttaaga cgcttacgtc ctgcagtcca aatggtgagc caccggaacc 2520 caacgccaaa gtaattttgg tcgatggtgt tcccggttgt ggaaaaacga aggagattat 2580 cgaaaaggta aacttctccg aggacttaat tttagtccct ggaaaggagg cttctaagat 2640 gattatccga agggccaacc aggctggagt gataagagcg gataaggaca atgttaggac 2700 ggtagattct ttcttgatgc atccttctag gagggtgttc aagaggttat tcatcgatga 2760 aggactaatg ctgcacacag gttgtgtgaa tttcctgctg ctgctatctc aatgcgacgt 2820 tgcgtacgtg tatggggaca cacaacaaat tccattcatt tgtagagtag cgaatttccc 2880 gtatcctgcg cattttgcaa aacttgtcgc tgatgagaag gaagttagaa gagtcacgct 2940 caggtgcccg gctgatgtca catatttcct taacaagaag tatgacgggg cggtgatgtg 3000 tactagcgca gtagagagat ccgtgaaggc agaagtggtg agagggaaag gcgctctgaa 3060 cccaataacc ttaccgttgg agggtaaagt tttgaccttt acgcaagctg acaagttcga 3120 gttactggag aaaggttaca aggatgtgaa cacggtgcac gaggtgcaag gtgagacgta 3180 cgagaagact gctattgttc ggttgacatc aactccgtta gaaatcatat cgagagcatc 3240 acctcatgtt ttggtggcgc tgacaagaca cactacgcgt tgtaaatatt acaccgtagt 3300 gttagaccca atggtgaatg tgatttcaga aatggagaag ttgtctaatt tccttctcga 3360 catgtatagg gttgaagcgg ggatccaata gcaattacag atcgatgcag tattcaaggg 3420 aacgaacttg tttgttcaga cgcccaagtc cggagactgg cgagatatgc aattttacta 3480 cgacactctt cttcccggta acagtacaat tcttaatgaa tttgatgctg ttacgatgaa 3540 tttgagggat atttccttaa acgtcaaaga ttgcagaatc gacttctcca aatctgtgca 3600 acttcctaaa gagcaaccta ttttccttaa gcctaaaata agaactgcgg cggaaatgcc 3660 aaggactgca ggtttactgg aaaatttggt cgcgatgatc aaaaggaata tgaacgcgcc 3720 acatctaact gggacgatag acatagagga tactgcatca ctggtagccg aaaagttttg 3780 ggatgcttac atcgacaaag aattcagtgg aactgaaaag atgtccttaa ctagggaaag 3840 tttttctaga tggctctcta aacaagagtc ttctacagtt ggtcagctag cggatttcaa 3900 ctttgtagat ttgccggcag tggatgagta caagcatatg atcaagagcc aacctaagca 3960 gaagttagac ttaagtatcc aggacgaata tcctgcctta cagacaatag tctatcactc 4020 aaaaaagatc aatgctattt tcggtcctat gttttcggaa cttacgagga tgttactcga 4080 gaggattgac tcttcgaagt ttctgttcta cactagaaag acacctgcgc agatagagga 4140 cttcttttct gacctagact caacccaggc aatggaaatt ctggaactcg atatttcgaa 4200 gtatgataag tcacagaacg agttccattg tgcggtagag tacaagattt gggaaaagct 4260 gggaattgac gagtggctag cggaggtatg gaaacaagga cacagaaaaa cgaccttgaa 4320 ggactatacg gccggaatca aaacgtgtct atggtatcaa aggaaaagtg gtgatgtgac 4380 aacctttatt ggtaacacta tcatcattgc agcctgtttg agctcaatga tccctatgga 4440 caaagtgata aaggcggcct tttgtgggga cgatagcctt atttatattc ctaagggttt 4500 ggacttacct gatatccagg cgggcgcgaa cctcatgtgg aactttgagg ccaaactctt 4560 cagaaagaag tatggttact tctgcggtcg ttatgttatt caccatgata gaggagccat 4620 agtatattac gatccgctta aactaatatc taagttaggt tgtaaacata ttagagatat 4680 tgttcactta gaagagttac gcgagtcctt gtgtgatgta gctagtaact taaataattg 4740 tgcgtatttt tcacagttag atgaggccgt tgccgaggtt cataagaccg cggtaggcgg 4800 ttcgtttgct ttttgtagta taattaagta tttgtcagat aagagattgt ttagagattt 4860 gttttctgtt tgataatgtc gatagtttcg tacgagccta aagtaagtga tttcctcaat 4920 ctttcgaaga aggaagagat cttaccgaaa gctctaacga ggttaaagac tgtgtctatt 4980 agtactaaag atattatatc tgttaaggag tccgaaactt tgtgtgatat agatttacta 5040 atcaatgtac cattagataa gtatagatat gtgggtatcc taggagctgt tttcaccgga 5100 gagtggttgg taccagactt tgttaaaggt ggagtaacga taagtgtgat agacaagcgt 5160 ctggtgaact ccaaggagtg tgtgattggt acgtacagag ccgcagccaa gagcaaaagg 5220 ttccagttca aattagttcc aaattacttc gtgtccactg cggacgctaa gaggaagcca 5280 tggcaggttc acgttcgtat tcaagatttg aagatcgagg cgggttggca gccattagct 5340 ctggaagtag tttcagttgc tatggttacc aataatgttg ttatgaaggg tttgagggag 5400 aaggtcgtcg caataaatga tccggacgtc gaaggtttcg aaggtgtggt tgacgaattc 5460 gtcgattcgg ttgcagcatt taaagcggtt gacaacttca ggaaaagaaa aaagaaggtt 5520 gaagaaaagg gtgtagtaag aaagtataag tatagaccgg agaagtacgc cggtcctaat 5580 tcgtttaatt taaaagaaga aaatgtctta caagattacg aacccgaatc agtaccagta 5640 tttcgcagcg gtgtgggcag agcccatacc aatgcttaac cagtgcatat cggcattgtc 5700 gcaatcgtac caaacacaag cagcgagaga cactgttaga cagcaattct caaacttgtt 5760 aagtgcggtt gtgacaccga gccagcggtt cccagaaaca gggtcccggg tgtatgtcaa 5820 ctcggctgtt ataaagccgt tatacgaggc tcttatgaag tcttttgata ctagaaatag 5880 gatcatagag acggaagagg agtcacgccc gtcagcatcc gaagtagcta acgcaacaca 5940 gcgtgttgat gacgcgaccg ttgccattag aagtcaaatt cagcttctgc tgagtgagct 6000 ttctagtgga catggttata tgaatagggc agagttcgag gctttattgc catggactac 6060 tgcacctgct acttaggcgt ggtgcgcacg atagcgcata gtgtttttct ctccacttaa 6120 atcgaagaga taaacttacg gtgtaaatcc gtgagggtgg cgtaaaccaa attacgcaat 6180 gttttgggtt ccatttaaat cgaaacccct tatttcctgg atcacctgtt aacgcacgtt 6240 tgacgtgtat tacagtggga ataagtaaaa gtgagaggtt cgaatcctcc ctaaccccgg 6300 gtaggggccc a 6311 //