ID   JN191615; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   JN191615;
XX
DT   01-JUN-2012 (Rel. 113, Created)
DT   01-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate SD-5 P10 gene, complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1677
RX   DOI; 10.1007/s00705-012-1282-2.
RX   PUBMED; 22447103.
RA   Li Y., Jia M., Jiang Z., Zhou T., Fan Z.;
RT   "Molecular variation and recombination in RNA segment 10 of rice
RT   black-streaked dwarf virus isolated from China during 2007-2010";
RL   Arch. Virol. 157(7):1351-1356(2012).
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RN   [2]
RP   1-1677
RA   Li Y., Jiang Z., Jia M., Zhou T., Fan Z.;
RT   ;
RL   Submitted (29-JUN-2011) to the INSDC.
RL   State Key Laboratory for Agrobiotechnology, China Agricultural University,
RL   2 Yuanmingyuan West Road, Beijing, Beijing 100093, China
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DR   MD5; d3250495979a1572762ff3f02b1a7a05.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="SD-5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Shandong"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:10990"
FT   CDS             1..1677
FT                   /codon_start=1
FT                   /product="P10"
FT                   /note="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:I3V6D5"
FT                   /protein_id="AFK73737.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGERTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLRSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 545 A; 304 C; 300 G; 528 T; 0 other;
     atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt accccagaga        60
     ctttccgata caataatttt gaacaaccga ccaacaatca ctctgctatc tcatttcaac       120
     aatctatttc atgaattaaa cattgtcaaa tcgccccacg ttgcatcttc ccaaactacc       180
     gttaatttgt acattcgtaa gcatttgttg acccgacttc atgatagact gcaaaccgta       240
     gaaactagca ctttacccaa catcacgcaa cttaaagacc atattcgtag cttctttcaa       300
     aatgaacatc aacctatttt tcagacccta acgaacaacg acctaagtga agaatttgta       360
     ggtgtgacta cttttggact aagcttattt gctacctcca aactcgatgc tgaacaaata       420
     gaacgtgtac aaattgagac cctaactgaa ggaaacatta ctttgaagcc cttttccgct       480
     gatggtttag aagtcattct cgatgatagt tatattggta tagttggtaa aattccaggt       540
     ttagaagttc ataaattgct agataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga tggtggttac       660
     gattttaatt gtcctgcaag cactacggat gttacacatt acggtggtta tgaccaattt       720
     tcacgtcaaa tgttcgaacg tttgaatcta ttttataata ttagccttag cataattccc       780
     gtttcagctt tgaagacagt tcatttattt gaaaaagaac taagtgtttt ggatgcagat       840
     aaatctttac tcgaacaaac ttggagcgca gtagcgtcat ttgttgaaac ttggcaggtt       900
     aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt gtctacgttg       960
     cgcactaatt acgatggcac ctctgcttct agtcctttca cagataagaa attcattgac      1020
     tggtacatta agactttttc taaaactgag aaaggatcgt cgttgcgtcg aaacgaatta      1080
     gaagagaaaa gtgccactag tacttcaact acagtaaaga aggttaaaat tcatttctcc      1140
     gttcaatatt ttgatgaatt taaggttaat ggacatgaaa aaagcgttgt agttcaaact      1200
     cataaaggtg aaaggacgtt agattattat cgtaaaattg gcgaagtgtt aagtgctatt      1260
     tggaaacgtg gtaaatcttt agctgtacct tgttttgatt acattaagct tggcgttgag      1320
     aaagcatttc atttagcacc cgtaattctg aagaagtata acttgactat tgatgatatt      1380
     atcaacttca ttgataaagg accttcttat ttagctaaat tagacaagat tgatgattgg      1440
     tctttaattt caaagcttat cattaccagc gttttaccta atatcattca agctgtttac      1500
     aaaaccgatc caagtaataa cgttatgaac tcagtaatta tcagtagagc gaacaatttg      1560
     ctgagatctg atagggacag gctattaaag aaggcacttt ccgccaacgt ttcttcttcc      1620
     aacacatcta gtcatgaaca tgtacagaag atagtattaa ataaagtgac aagatga         1677
//