ID   JN191605; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   JN191605;
XX
DT   01-JUN-2012 (Rel. 113, Created)
DT   01-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate JS-5 P10 gene, complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1677
RX   DOI; 10.1007/s00705-012-1282-2.
RX   PUBMED; 22447103.
RA   Li Y., Jia M., Jiang Z., Zhou T., Fan Z.;
RT   "Molecular variation and recombination in RNA segment 10 of rice
RT   black-streaked dwarf virus isolated from China during 2007-2010";
RL   Arch. Virol. 157(7):1351-1356(2012).
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RN   [2]
RP   1-1677
RA   Li Y., Jiang Z., Jia M., Zhou T., Fan Z.;
RT   ;
RL   Submitted (29-JUN-2011) to the INSDC.
RL   State Key Laboratory for Agrobiotechnology, China Agricultural University,
RL   2 Yuanmingyuan West Road, Beijing, Beijing 100093, China
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DR   MD5; 259f56ed68aaa6684bb4858199b73a46.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="JS-5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:10990"
FT   CDS             1..1677
FT                   /codon_start=1
FT                   /product="P10"
FT                   /note="capsid protein"
FT                   /db_xref="GOA:I3V6C5"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:I3V6C5"
FT                   /protein_id="AFK73727.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATNTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 554 A; 299 C; 287 G; 537 T; 0 other;
     atggctgaca taagactcga catagcaccc gatcttatcc ataatggtgt accccagaga        60
     ctttccgata caataatttt aaacaaccga ccaacaatca ctctgttatc tcatttcaac       120
     aatctatttc atgaactaaa cattgtcaaa tcgccccacg ttgcatcttc ccaaactact       180
     gttaatttgt acattcgtaa gcatttgttg acccgacttc atgatagact acaaaccgta       240
     gaaactagca ctttgcccaa cattacacaa cttaaagacc atattcgtag cttttttcaa       300
     aatgaacacc aacctatttt tcagacccta acgaacaacg acctaagtga agaatttgta       360
     ggtgtgacta cttttggact aagtttattt gctacctcca aacttgatgc tgaacaaata       420
     gaacgtgtac aaattgagac cctaactgaa ggaaacatta ctttgaaacc cttttctgct       480
     gatggtttag aagtcattct cgatgatagt tatattggta tagttggtaa aatcccaggt       540
     ttagaagttc ataaattgct agataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga tggtggttac       660
     gattttaatt gtcctgcaag cactactgat gttacacatt atggtggtta tgaccaattt       720
     tcacgtcaaa tgttcgaacg tttgaattta ttttataaca ttagccttag cataattccc       780
     gtttcagctt tgaaaacagt tcatttattc gaaaaagaac taagtgtttt agatgcagat       840
     aaatctttac tcgaacaaac ttggagcgcg gtagcgtcat ttgttgaaac ttggcaggtt       900
     aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt gtccactttg       960
     cgcactaatt acgatggcac ctctgcttct agtcctttta cagataagaa attcattgac      1020
     tggtatatta agactttttc taagactgaa aaaggatcgt ctttacgtcg aaatgaatta      1080
     gaagagaaaa gtgccactaa tacttcaacc acagtaaaga aggttaaaat tcatttctcc      1140
     gttcaatatt ttgatgaatt taaagttaat ggacatgaaa aaagcgttgt agttcaaact      1200
     cataaaggcg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt aagcgctatt      1260
     tggaaacgtg gtaaatcttt ggctgtacct tgttttgatt acattaagct tggcgtcgag      1320
     aaagcatttc atttagcacc cgtaattctg aagaaatata atttgactat tgatgacatt      1380
     atcaacttta ttgataaagg accttcttat ttagctaaat tagacaagat tgatgattgg      1440
     tctttaattt caaagcttat cattaccagt gttttaccta atatcattca agctgtttac      1500
     aaaaccgatc caagtaataa tgttatgaac tcagtaatca tcagtagagc gaacaatttg      1560
     ttgaaatctg atagggacag gctattaaag aaggcacttt ccgccaacgt ttcttcttcc      1620
     aacacatcta gtcatgaaca tgtacagaag atagtattaa ataaagtgac aagatga         1677
//