ID   JN191603; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   JN191603;
XX
DT   01-JUN-2012 (Rel. 113, Created)
DT   01-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate JS-3 P10 gene, complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1677
RX   DOI; 10.1007/s00705-012-1282-2.
RX   PUBMED; 22447103.
RA   Li Y., Jia M., Jiang Z., Zhou T., Fan Z.;
RT   "Molecular variation and recombination in RNA segment 10 of rice
RT   black-streaked dwarf virus isolated from China during 2007-2010";
RL   Arch. Virol. 157(7):1351-1356(2012).
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RN   [2]
RP   1-1677
RA   Li Y., Jiang Z., Jia M., Zhou T., Fan Z.;
RT   ;
RL   Submitted (29-JUN-2011) to the INSDC.
RL   State Key Laboratory for Agrobiotechnology, China Agricultural University,
RL   2 Yuanmingyuan West Road, Beijing, Beijing 100093, China
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DR   MD5; 69925f13d780cb103c6a066254e6667e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="JS-3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Jiangsu"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:10990"
FT   CDS             1..1677
FT                   /codon_start=1
FT                   /product="P10"
FT                   /note="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:I3V6C3"
FT                   /protein_id="AFK73725.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 545 A; 312 C; 299 G; 521 T; 0 other;
     atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt accccagaga        60
     ctttccgata caataatttt gaacaaccga ccaacaatca ctctgctatc tcatttcaac       120
     aatctatttc atgaattaaa cattgtcaaa tcgccccacg ttgcatcttc ccaaactacc       180
     gttaatttgt acattcgtaa gcatttgttg acccgacttc atgatagact gcaaaccgta       240
     gaaactagca ctttacccaa catcacgcaa cttaaagacc atattcgtag cttctttcaa       300
     aatgaacacc aacctatttt ccagacccta acgaacaacg acctaagtga agaatttgta       360
     ggtgtgacta cttttggact aagcttattt gctacctcca aacttgatgc tgaacaaata       420
     gaacgtgtac aaattgagac cctaactgaa ggaaacatta ctttgaagcc tttttccgct       480
     gatggtttag aagtcattct cgatgatagt tatattggta tagttggtaa aattccaggt       540
     ttagaagttc ataaattgct agataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga tggcggttac       660
     gattttaatt gtcctgcaag cactacggat gttacacact acggtggtta tgaccaattt       720
     tcacgtcaaa tgttcgaacg tttgaatctc ttttataata ttagccttag cataatcccc       780
     gtttcagctt tgaaaacagt tcatttattt gaaaaagaac taagtgtttt ggatgcagat       840
     aaatctttac tcgaacaaac ttggagcgca gtagcgtcat ttgttgaaac ttggcaggtt       900
     aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt gtccacgttg       960
     cgcactaatt acgatggcac ctctgcttct agtcctttca cagataagaa attcattgat      1020
     tggtacatta agactttttc taaaactgag aaaggatcgt cgttgcgtcg aaacgaatta      1080
     gaagagaaaa gtgccactag tacttcaact acagtaaaga aggttaaaat tcatttctct      1140
     gttcaatatt ttgatgaatt taaagttaac ggacatgaaa agagcgttgt agttcaaact      1200
     cataaaggcg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt aagtgctatt      1260
     tggaaacgtg gtaaatcttt ggctgtacct tgttttgatt acatcaagct tggcgttgag      1320
     aaagcatttc atttagcacc cgtaattctg aagaagtata acttgacgat cgacgacatt      1380
     atcaacttca ttgataaagg accttcctat ttggctaagt tagacaaaat tgatgattgg      1440
     tctctaattt caaagcttat tattaccagt gttttaccta acattattca agctgtttat      1500
     aaaaccgatc caagtaataa tgttatgaac tcagtaatta tcagtagagc gaacaacttg      1560
     ttgaaatctg atagggacag actattaaag aaggcacttt ccgccaacgt ttcttcctcc      1620
     aatacatcta gtcatgagca tacacagaag atagtattaa ataaagtgac aagatga         1677
//