ID JN135236; SV 3; circular; genomic DNA; STD; VRL; 2744 BP. XX AC JN135236; XX DT 18-DEC-2011 (Rel. 111, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 6) XX DE Jatropha leaf yellow mosaic Katarniaghat virus segment DNA-A, complete DE sequence. XX KW . XX OS Jatropha leaf yellow mosaic Katarniaghat virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RX DOI; 10.1007/s00705-015-2375-5. RX PUBMED; 25716923. RA Srivastava A., Kumar S., Jaidi M., Raj S.K.; RT "Molecular characterization of a new begomovirus associated with leaf RT yellow mosaic disease of Jatropha curcas in India"; RL Arch. Virol. 160(5):1359-1362(2015). XX RN [2] RP 1-2744 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (20-JUN-2011) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2744 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (18-JUN-2012) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX RN [4] RC Sequence update by submitter RP 1-2744 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (26-AUG-2014) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; 85fd8551ee3ae0ba286c705de9d71d24. XX CC On Aug 26, 2014 this sequence version replaced gi:391878951. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Jatropha leaf yellow mosaic Katarniaghat virus" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="Katarniaghat" FT /mol_type="genomic DNA" FT /country="India:Katarniaghat Wildlife Sanctuary, Bahraich, FT Uttar Pradesh" FT /collected_by="Ashish Srivastava" FT /collection_date="29-Apr-2011" FT /clone="AS-NBRI-JC6" FT /db_xref="taxon:1530093" FT gene 135..491 FT /gene="AV2" FT CDS 135..491 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:I6QUM6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6QUM6" FT /protein_id="AFM45100.1" FT /translation="MWDPLLNDFPDSVHGFRCMLALKYLQLVESTYSPDTLGYDLIRDL FT ISVIRARSYVEASCRYHHFNSRLESTSPSELRQPVQQPCSCPHCPRHKKAGLVEQAHEP FT QAQVLQDVQESGCA" FT gene 295..1065 FT /gene="AV1" FT CDS 295..1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in virion encapsidation" FT /db_xref="GOA:G9FJB1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9FJB1" FT /protein_id="AEV76914.1" FT /translation="MSKRAADIIISTPGSKVRRRLNFDSPYSNRAAVPTVRVTKRQAWS FT NRPMNRKPRFYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVIYNQQEAGKYENH FT AENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="increases viral replication" FT /db_xref="GOA:G9FJB2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G9FJB2" FT /protein_id="AEV76915.2" FT /translation="MESRTGELITAAQATSGVFIWEVPNPLYFKITDHHRLPFNMTWDI FT KTVQIRFNHNLRRALGLHQWWMDFKIWTALHPQTGRFLRVFSYQVLKYLDMLGVISINN FT VVNAVEHVMYNVLTKTVSIEQANIIKFNVY" FT gene complement(1207..1614) FT /gene="AC2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional transactivator protein" FT /note="transcriptional activator for viral sense genes" FT /db_xref="GOA:G9FJB3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9FJB3" FT /protein_id="AEV76916.2" FT /translation="MRPSSPSTSRSTQVPIKINHRAAKSRAIRRKRIDLNCGCSYYLHI FT NCPNHGIPHRGTHHCSSGDKWRVYLGSSKSPLFQDHRPPPPAVQHDLGHKNRPDSVQPQ FT PEESVGTTSVVDGFQDLDSLTPSDWAFLESI" FT gene complement(1544..2602) FT /gene="AC1" FT CDS complement(1559..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:G9FJB4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9FJB4" FT /protein_id="AEV76917.2" FT /translation="MSTPKLFIINAKNYFLTYPRCGLSKDPPLSQIKNLETPTNPKFIK FT ICRELHENGEPHLHVLVQYEGKFKCQNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQSANDAYAAAINSGSKSEALKILRELAPKDYVLQFH FT NLNANLDKIFTTPETIYESPFGLSTFDRVPEELDVWFHENVMDPAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALRAWALKNASFVTIDQPL FT YSGSNQD" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6R7P4" FT /protein_id="AFM45099.1" FT /translation="MGNLICMCSSSTKASSNARIRDSSTWYPRPGQHISIQTFRELNPA FT PTSSPISTRTEILWNGENSRSMAGLHGEANSRQMMHTPPQLTAAVSQRLLRSLES" XX SQ Sequence 2744 BP; 676 A; 615 C; 666 G; 787 T; 0 other; accggatggc cgcgctccct gctttgtggt tccccccccc cacgtggagt tgtcgcccac 60 tcagaacgct gcgtcaagct tgaatatctg tggtccctgt ttaagtactt cgtgagcaag 120 ttaatacttg caaaatgtgg gatccactac ttaacgattt tccagactcc gttcacggtt 180 tccgttgtat gctagcgctg aagtaccttc agctcgtaga aagtacttat tcccctgata 240 cgctcgggta cgatctaatc cgggacctga tttctgttat cagggccaga agctatgtcg 300 aagcgagctg ccgatatcat catttcaact ccaggctcga aagtacgtcg ccgtctgaac 360 ttcgacagcc cgtacagcaa ccgtgcagct gtccccactg tccgcgtcac aaaaaggcag 420 gcctggtcga acaggcccat gaaccgcaag cccaggtttt acaggatgta caggagtccg 480 gatgtgccta gaggctgtga aggcccatgt aaggttcagt catttgagtc caggcacgat 540 gtcgtgcata taggtaaggt catgtgcatc tccgatgtca ctcgaggtac cggtcttact 600 catcgcgtgg gtaagaggtt ttgcgtcaag tcagtctaca ttctgggcaa gatttggatg 660 gatgagaaca taaagactaa gaatcacacc aatagtgtga tgtttttcct cgtcagggat 720 cgtaggcctg tggataagcc ccaggacttc ggggaagtct tcaacatgtt cgataatgag 780 cccagtacag caactgttaa aaacatgcat cgtgatcgct accaagtgct caggaagtgg 840 agtgctacgg tgactggtgg tcagtacgca agcaaggagc aggctttagt taggcgtttt 900 tttagggtca ataattatgt aatttacaac cagcaagagg ctggcaaata tgagaatcac 960 gctgagaatg cgttgatgct ctacatggcg tgtactcacg cctccaaccc cgtgtatgct 1020 acgcttaaga tacggatata tttttatgac tctgtaacga attaataaac attaaatttt 1080 attatattgg cctgctcgat actgacagtt tttgttaata cattgtacat tacatgttct 1140 acagcattta caacgttatt tattgaaata acccctagca tatccaggta tttaagtact 1200 tggtaactaa atactctcaa gaaacgccca gtctgagggt gtaaggctgt ccagatcttg 1260 aaatccatcc accactgatg tagtcccaac gctctcctca ggttgtggtt gaaccgaatc 1320 tggacggttt ttatgtccca ggtcatgttg aacggcaggc ggtggtggtc tgtgatcttg 1380 aaatagaggg gatttggaac ttcccagata aacacgccac ttgtcgcctg agctgcagtg 1440 atgagttccc ctgtgcggga ttccatggtt ggggcagttg atgtggagat agtacgagca 1500 gccgcagttg aggtctatcc tcttgcgcct gatggcccta ctcttagctg ccctgtggtt 1560 aatcttgatt ggaacctgag tagagcggct ggtcgatggt gacgaaggac gcatttttta 1620 atgcccaagc ccttagtgcc gtattcttcg gctcatctag gaactcttta tagctggaat 1680 tgggcccagg attgcagagg aagatagtgg gtattccccc tttaatttga actggctttc 1740 cgtactttgt gttgctttgc cagtctctct gggcccccat gaactctttg aagtgcttta 1800 gatagtgcgg atctacgtca tcaatgacgt tataccaggc atcattgcta aagactttgg 1860 gactgaggtc cagatgtcca cataggtaat tatgtggacc caatgcacga gcccacatag 1920 tcttacctgt ccgactatcg ccctcgatta cgattgactt cggtctcaaa ggccgcgcag 1980 cgggatccat gacattttca tggaaccata catcgagttc ttctggaact cgatcaaatg 2040 tcgacagacc aaaaggactc tcatagatag tttcaggtgt tgtaaaaatt ttatccaaat 2100 tggcattcaa attatgaaac tgcaggacgt agtctttagg agctagctct ctaaggatct 2160 taagagcctc tgacttactg ccgctgttaa ttgcggcggc gtatgcatca tttgccgact 2220 gttggcctcc ccgtgcagac ctgccatcga tctggaattc tccccattcc agagtatctc 2280 cgtccttgtc gatataggac ttgacgtcgg agctggattt agctccctga atgtttggat 2340 ggaaatgtgc tgacctggtc ggggatacca ggtcgaagaa tctcttattc tggcatttga 2400 acttgccttc gtactggacg agcacatgca gatgaggttc cccattttca tgaagttctc 2460 tgcagatttt aatgaattta gggtttgtag gtgtttctag gtttttaatt tgggaaagcg 2520 gggggtcttt ggagagcccg catctgggat aagtgaggaa ataattcttg gcgtttataa 2580 taaaaagctt aggtgttgac atgagacccg attgaccgct attcaatcat ttatccccta 2640 tattcgggtc tctatatata catgagaccc aaatggcata aatggtaatt atgggaatat 2700 aatttgaatt tgaaagcggc catccgtata atatttataa tatt 2744 //