ID JN135233; SV 1; circular; genomic DNA; STD; VRL; 2746 BP. XX AC JN135233; XX DT 18-DEC-2011 (Rel. 111, Created) DT 18-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Papaya leaf curl virus isolate Lucknow segment DNA-A, complete sequence. XX KW . XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2746 RA Srivastava A., Snehi S.K., Raj S.K.; RT "Papaya leaf curl virus associated with yellow vein net disease in RT Amaranthus cruentus L. in India"; RL Unpublished. XX RN [2] RP 1-2746 RA Srivastava A., Snehi S.K., Raj S.K.; RT ; RL Submitted (17-JUN-2011) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; 18af6a421f4cba94f0271097dba0dda8. XX FH Key Location/Qualifiers FH FT source 1..2746 FT /organism="Papaya leaf curl virus" FT /segment="DNA-A" FT /host="Amaranthus cruentus L." FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Ashish Srivastava" FT /collection_date="29-Mar-2011" FT /clone_lib="ASNBRI 1" FT /db_xref="taxon:53260" FT gene 150..506 FT /gene="AV2" FT CDS 150..506 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:G9FJ98" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G9FJ98" FT /protein_id="AEV76901.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL FT ISVIRARNYGEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 310..1083 FT /gene="AV1" FT CDS 310..1080 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G9FJ99" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9FJ99" FT /protein_id="AEV76902.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWA FT NRPMSRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNDP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSLTN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G9FJA0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G9FJA0" FT /protein_id="AEV76903.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITKHQNPPFTMKEDI FT IKVQIQFNHNLRKVLGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKFLDNLGVNSINN FT VIRSVDHVLWDVLQHIVYVEQSYSIKFNIY" FT gene complement(1222..1626) FT /gene="AC2" FT CDS complement(1222..1626) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional transactivator protein" FT /db_xref="GOA:G9FJA1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9FJA1" FT /protein_id="AEV76904.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGNRRRRVDLPCGCSYFISLA FT CHHYGFTHRGTHHCSSSRKWRVYLGNSKSPVFQDNKTPKPAIHNERRHNQSPNTVQSQP FT EESVGDTQMFSSLPNLDDFTASDWSFLKGF" FT gene complement(1529..2614) FT /gene="AC1" FT CDS complement(1529..2614) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:G9FJA2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9FJA2" FT /protein_id="AEV76905.1" FT /translation="MPRLNSFCVNAKNIFLTYPKCPIPKEQMLEILQSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYI FT EKDSDYIDWGQFQIDGRSARGGQQTASDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKCNLDRIFTPPVEVYVSPFLSSSFDQVPEELEEWAVENVMVAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHFSLCGHINLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPYSSYKEFLDEEKNSALKNWALKNAIFVTLEGPL FT YSGSNQSAAQASQERKQTSSC" FT gene complement(2200..2457) FT /gene="AC4" FT CDS complement(2200..2457) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G9FJA3" FT /protein_id="AEV76906.1" FT /translation="MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPA FT LMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLVMQQQRP" XX SQ Sequence 2746 BP; 786 A; 528 C; 616 G; 816 T; 0 other; taatattacc ggatggccgc gaaaaaatta atggacccca aaagcactaa ctgacaaaga 60 catctccacc aatgaaaaga gctcctcaaa gcttaattgt tatgtggtcc cctatttaaa 120 cttcgtcacc aagtagtgca tagtgcacta tgtgggatcc attactgaac gagtttcccg 180 aaaccgttca cggttttaga tgtatgttag cagttaaata tctgcaatta gtagagaaga 240 cttattctcc agatacatta gggcatgatt taattaggga tttaatttca gttatcaggg 300 ctaggaatta tggcgaagcg accagcagat ataatcattt ccacgcccgc ttcgaaggta 360 cgccgccgtc tcaacttcga cagcccatat gtgagccgtg ctgctgcccc cattgtccgc 420 gtcaccaaag caagagcatg ggcgaacagg cccatgagca gaaagcccag gatgtacagg 480 atgtacagaa gtccagatgt ccctagagga tgtgaaggcc catgtaaggt ccagtcgttt 540 gagtccagac atgacattca gcatataggt aaagtcatgt gtgtcagtga tgttacgcgt 600 ggaactgggc tgactcaccg agtgggtaaa aggttttgtg ttaaatccgt ttatgtcttg 660 ggtaagatat ggatggacga aaatattaag accaagaacc acacgaacag tgtgatgttt 720 tttttagtta gggatcgtag gcctgtggat aaacctcaag attttggtga ggtttttaac 780 atgtttgata atgaccccag tacggctact gtgaagaatg ttcatcgtga taggtatcaa 840 gtgcttcgga aatggcatgc aactgttacg ggtggacaat atgcgtcaaa ggaacaagct 900 cttgtgaaga agtttgttag ggttaataat tatgttgtgt ataaccagca agaagctggc 960 aagtatgaaa atcattctga gaatgcgtta atgttgtata tggcatgtac gcatgcctct 1020 aacccagtgt atgctacttt gaagatacgg atctatttct atgattctct cacaaattaa 1080 taaatattaa attttattga atatgattgt tctacatata caatgtgttg taatacatcc 1140 cataaaacat gatcaactga tctgattaca ttattaatac tgttaactcc taaattatct 1200 aaaaacttta aaacttgggt cttaaaaacc cttaagaaac gaccagtctg aggctgtgaa 1260 gtcatccaga ttcggtagac tagaaaacat ttgtgtatcc ccaacacttt cctcaggttg 1320 tgattgaact gtatttggac tttgattatg tcttctttca ttgtgaatgg cgggttttgg 1380 tgttttgtta tcttgaaata caggggattt tgaatttccc agataaacac gccattttct 1440 gcttgagctg cagtgatgag ttccccggtg cgtgaatcca taatggtgac aggctagtga 1500 tatgaaatat gaacatccac aagggagatc aacacgacga cgtctgtttc ctttcttggc 1560 tagcctgtgc tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgacgaaga 1620 tcgcattctt taaagcccaa tttttcagtg cgctattttt ctcttcgtcc aagaactctt 1680 tatagcttga gtagggtcct ggattgcaga ggaagatagt gggaattcct cctttaattt 1740 gaactggctt tccgtacttg gtatttgatt gccagtccct ttgggccccc atgaattcct 1800 taaagtgctt tagatagtgg ggatctacgt catcaatgac gttgtaccaa gcatcattat 1860 tgtagacctt aggactaagg tttatgtgac cacacaggga aaaatgtgga cccaaagacc 1920 tagcccacat tgtctttccg gttctactat caccctctat gacaatactc atgggcctca 1980 aaggccgcgc agcggcaacc attacattct caacagccca ttcttcaagt tcttcaggga 2040 cttgatcaaa agaagaagat aaaaaaggag aaacataaac ctcaacagga ggtgtaaaaa 2100 tcctatctaa attacatttt aaattatgat attgaaaaat aaaatcttta gggagttttt 2160 ccctaattat tgctaaggct gcttcagctg aacctgcatt tagggcctct gctgctgcat 2220 cactagctgt ctgttgacct cctcgagcag atcttccatc gatctgaaac tgaccccagt 2280 cgatgtaatc actgtccttc tcgatgtagg acttgacatc agagctggac ttagctccct 2340 ggaagtttgg gtggaattgg gtggagttat tagggtgagt gacatcgaaa tgtctggggt 2400 ttctgaactt ggatttacct ttgaactgga tgagggcatg gatatgcaga gacccatctt 2460 ggtgtttttc ttgtgccact ctgataaata atttatcaga tgggcaattt attgactgaa 2520 gaatctcgag catttgctct ttgggtattg ggcattttgg ataagtgagg aagatatttt 2580 tggcattaac acaaaaggag ttaagacgag gcatattgaa ttggggacac tcaaaactct 2640 gaggaatggg ggactctggg gacgcattaa tatggtgtcc ccaaatggcc ttttcgtaat 2700 tttgaaagaa aattcaaaat ttaaaatccc aaagcggcca tccgta 2746 //