ID   JN133285; SV 1; circular; genomic DNA; STD; VRL; 979 BP.
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AC   JN133285;
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DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-U4, complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-979
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
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RN   [2]
RP   1-979
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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DR   MD5; a5d31628ef97e811a917e1fa77ff2fc1.
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FH   Key             Location/Qualifiers
FH
FT   source          1..979
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-U4"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(962..979,1..11)
FT                   /note="part of replication origin"
FT   misc_feature    join(973..979,1..2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   regulatory      285..291
FT                   /regulatory_class="TATA_box"
FT   CDS             366..677
FT                   /codon_start=1
FT                   /product="U4 protein"
FT                   /db_xref="GOA:I6QCK7"
FT                   /db_xref="UniProtKB/TrEMBL:I6QCK7"
FT                   /protein_id="AFK65517.1"
FT                   /translation="MERRFIFFFLLVLTVLNSSFVMNLILGYVLGVLLVKNIPGLRAML
FT                   VGERDVEIKSEDDTFVEGVAEDVRDHLKTLGLDVKVEGEDLEYLQSLWKELRNHAVNM"
FT   regulatory      741..746
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 979 BP; 267 A; 154 C; 215 G; 343 T; 0 other;
     acccccctcc cgggatcaga ggtttcattt ggaatgaatc tcagccgttc attgtggcta        60
     ccacgtggac gatcaggatc tgtgattcgc gaagcgaatc tgacggaaga ttgtccacta       120
     cgctttaaat ggttacttgt ttttgattgg tctaaattgc ggctggaccc actatgcttt       180
     ccatgtgctt tccagcacat ggcagctaat aaatgggaat taatttaata acaattaaat       240
     tgaaaaatac tggcgttctg ggtacgctat ctcatttggc tttctataaa agccaggctt       300
     cattggatcc ttcattgcta agaaattgtt tctctctcta catctttaga gagagatagt       360
     ccgctatgga acgtcggttc attttcttct tcctcctggt tcttacggtg ttaaattcat       420
     cctttgtgat gaatttaatt ctgggttatg ttcttggtgt attattagtg aagaatatcc       480
     cagggttgcg agctatgctc gtcggtgaaa gagatgttga aatcaagtct gaagatgata       540
     cgttcgttga aggtgttgct gaagatgttc gtgatcatct gaagacactg ggcttggatg       600
     tcaaggttga aggtgaagac ctggagtatt tacagtcttt atggaaagag ttaagaaatc       660
     atgcagttaa tatgtaatat gtaaattacc gtgaggtaag ttatattgta tatttcacct       720
     agcgtgtaat cgtttggaat aataaaataa tattatttta tgttattggg cctaagtcct       780
     tattgggcct tgtattgtcc attacacgtt tgtatgtaac ccaattaata ataacgatat       840
     tgctattatt ttaataagat acgcgaagcg atatgtttaa ttaattttgt ttaattaaac       900
     taataggcat atttaattat gtatggggat caaatgtact atttgatccc gtgatgacgt       960
     agggaggggg cttagtatt                                                    979
//