ID   JN133284; SV 1; circular; genomic DNA; STD; VRL; 985 BP.
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AC   JN133284;
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DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-U2, complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-985
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
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RN   [2]
RP   1-985
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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DR   MD5; 72cd2531eb0dadb694e1c98267a7ce46.
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FH   Key             Location/Qualifiers
FH
FT   source          1..985
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-U2"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(965..985,1..14)
FT                   /note="part of replication origin"
FT   misc_feature    join(979..985,1..2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   regulatory      235..241
FT                   /regulatory_class="TATA_box"
FT   CDS             283..639
FT                   /codon_start=1
FT                   /product="U2 protein"
FT                   /db_xref="UniProtKB/TrEMBL:I6QEP0"
FT                   /protein_id="AFK65516.1"
FT                   /translation="MVEINSRLSMRDVIVMRAEQDAFWVSYESYLHFNEDMVGIRCRRH
FT                   GRRVKAYPRFSKSGPVRLRSRTRLVYDILVEDCDMCQRERDVHQYSNPSKEEDWIYLFN
FT                   SSAEPTSSSIHELM"
FT   regulatory      699..704
FT                   /regulatory_class="polyA_signal_sequence"
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SQ   Sequence 985 BP; 278 A; 161 C; 226 G; 320 T; 0 other;
     acccccgtgc caggatcagg ggatcacttt aaatacatct cgaccgttca tttgaatgac        60
     acgtgtatgc tcaagattaa ctcttgagtg ctaaggcggg aaaaactaat tcaaaagata       120
     ctttgcttcg cctcgaagca aaggtggtcc cacttgcgca agtgggcgtc gatagtgcgg       180
     ttactttccc agggtattct gggaaacttc ctctgaaagc ttgttcagaa attctataaa       240
     tagtggtgtt cttcatgtta atcattctat tttgtttttg tcatggtgga aattaattct       300
     cgtctctcta tgagagacgt aatagttatg agggcagagc aggatgcgtt ctgggtttcg       360
     tatgagagtt atcttcattt taatgaagat atggttggaa ttcgctgtcg tcgtcatgga       420
     agaagagtga aggcatatcc ccgattttct aaatcgggtc cagttcgtct ccgatcaaga       480
     acaaggttag tttatgatat cttggttgaa gactgtgata tgtgccaacg tgaacgggat       540
     gttcatcagt actcaaatcc gtcaaaggaa gaagactgga tttatttatt taattcatct       600
     gcagaaccta cttcttcatc aattcatgaa ttgatgtaac tgtatatgaa acagatgaat       660
     tgttattgta ataacaaaaa ttgtattctg aattatggaa taaaatggaa atttattata       720
     tttttgttgt ttatggtgtt atgtttatta tattgtgtga tcggtggaga agacgatgaa       780
     tagggattat ggaagacgga caggtgtcct tcacacatct caacaaatac tattgctatt       840
     gttttgaaat acatcgcgaa gctatatgct ttgggccgga aggcccaata aggacttagg       900
     cccaattata aattgggtat tgggatcaaa tagtgtcatt tggcactatt tgatcccggg       960
     acagcctggc acggggctta gtatt                                             985
//