ID   JN133283; SV 1; circular; genomic DNA; STD; VRL; 978 BP.
XX
AC   JN133283;
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DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-U1, complete sequence.
XX
KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-978
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
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RN   [2]
RP   1-978
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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DR   MD5; 04f4cf9867dd66c0b9c3b6d8bfd02749.
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FH   Key             Location/Qualifiers
FH
FT   source          1..978
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-U1"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(958..978,1..14)
FT                   /note="part of replication origin"
FT   misc_feature    join(972..978,1..2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   regulatory      268..274
FT                   /regulatory_class="TATA_box"
FT   CDS             332..796
FT                   /codon_start=1
FT                   /product="U1 protein"
FT                   /db_xref="UniProtKB/TrEMBL:I6QGM8"
FT                   /protein_id="AFK65515.1"
FT                   /translation="MVQGFFKLGDIPIVDEGTEALISDSRKRQGMFCSDEKLVKKLQVI
FT                   NIKVEDISYGIDDDDARIRFKFRLNYRFRKQLGIVLLGVRMTAITRLETPSAKSVQSLL
FT                   QRRLNGICDSNEVISIFMFFNNIGQLLNSTKWIHRVDEVNPICTLYSMED"
FT   regulatory      796..805
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 978 BP; 271 A; 157 C; 227 G; 323 T; 0 other;
     acccccgtgc caggatcagg ggatcacttt aaatacatct ggaccgttca tttgaatgac        60
     acgtgtatgc tcgagattaa ttcattattg tataaggcgg aataagtaat tggaaatata       120
     ctttgcttcg cctcgaagca aaggtggtcc cacgacacgc aagtggccga caataatggg       180
     attactttcc acgcgttttc tttatggccc acttactttc aagtggatgg gaactttagt       240
     tgcgtcgttt cgacgccatg gttcttctat ataaactgaa ctaccgttca gttttataat       300
     tgttatagat taaattggtt ctctagagaa gatggttcaa gggtttttca aattgggtga       360
     tatcccaatt gtcgatgaag gtacagaggc gttgatttct gattcaagga aacgacaagg       420
     tatgttctgt tctgacgaga aactggtgaa gaaattgcag gtgattaata tcaaggttga       480
     agacatctca tatggtatcg atgacgatga tgcgaggatt cgcttcaagt ttcgtctgaa       540
     ttatcggttc aggaagcagt tgggaattgt tcttctgggt gtccggatga ctgctattac       600
     aagattggag acgccatcgg ctaaatctgt tcagtcctta ttacagagaa ggttaaacgg       660
     tatatgtgat agtaatgaag taattagtat atttatgttt tttaataaca taggtcagtt       720
     attaaattct actaaatgga ttcatcgtgt tgatgaggtt aatccgatat gtactctgta       780
     ttcaatggaa gattaaataa ataaatattt attgtgttaa tactcttgct attgttttta       840
     aattccacgc gaagcggtat gctttgggct ggaaggccca ataaggactt aggcccaatt       900
     ttatttgtgt tgttgggatc aaatagtgtc atttggcact atttgatccc gggacagcct       960
     ggcacggggc ttagtatt                                                     978
//