ID   JN133279; SV 1; circular; genomic DNA; STD; VRL; 983 BP.
XX
AC   JN133279;
XX
DT   02-JUL-2012 (Rel. 113, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE   Pea necrotic yellow dwarf virus segment DNA-S, complete sequence.
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KW   .
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OS   Pea necrotic yellow dwarf virus
OC   Viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-983
RA   Grigoras I., Gronenborn B., Vetten H.-J.;
RT   "Pea necrotic yellow dwarf virus";
RL   Unpublished.
XX
RN   [2]
RP   1-983
RA   Grigoras I.;
RT   ;
RL   Submitted (18-JUN-2011) to the INSDC.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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DR   MD5; 78fc0141eee129f3ed171583f484c1ac.
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FH   Key             Location/Qualifiers
FH
FT   source          1..983
FT                   /organism="Pea necrotic yellow dwarf virus"
FT                   /segment="DNA-S"
FT                   /host="Pisum sativum"
FT                   /strain="Germany"
FT                   /isolate="Drohndorf-15"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany:Drohndorf"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="H.-J. Vetten"
FT                   /collection_date="01-Jul-2009"
FT                   /identified_by="I. Grigoras and H.-J. Vetten"
FT                   /db_xref="taxon:753670"
FT   stem_loop       join(963..983,1..14)
FT                   /note="part of replication origin"
FT   misc_feature    join(977..983,1..2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   regulatory      223..229
FT                   /regulatory_class="TATA_box"
FT   CDS             262..774
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR006753"
FT                   /db_xref="UniProtKB/TrEMBL:I6QEN9"
FT                   /protein_id="AFK65511.1"
FT                   /translation="MAPFAQWAVKKRRTPRGGARRYSKAVAPTTKVAFHQSTVLNKEDI
FT                   VGFEIKPPDITRYKIRRVVLFCTFRMPPGELLNYLIVKTNSPLLNWGAVFTAPGLMVKE
FT                   QFQDMVTIVTGGKLEGSGVAGSTSLKAMRKVVNLGAGVAQTQHMYVVFFSSDSMKAILE
FT                   GRVYVAI"
FT   regulatory      815..821
FT                   /regulatory_class="polyA_signal_sequence"
XX
SQ   Sequence 983 BP; 277 A; 173 C; 228 G; 305 T; 0 other;
     acccccgtgc caggatcagg ggatcacttt aaatacatct agaccgttca tttaaacgac        60
     acgtggacgc tcaagattaa ttcttgagtg ggaatcaatt attggacttt ctctttctta       120
     ctttaaggaa agcaaactgc tttccccgac attactttcc atgaatccgc gttaaatgct       180
     tttgattctt tgcttcggga cgaagcaaag tatttaattg cctataaata ggcttcgtca       240
     ttatgtattg ttcattatca aatggcgccg tttgctcagt gggctgtgaa gaagagaaga       300
     acaccacgtg gtggtgcacg gcgctattcc aaagctgtgg ctccgaccac caaggttgcg       360
     tttcatcaaa gcacagttct gaacaaggag gatatcgttg gttttgaaat aaaacctccg       420
     gatatcacca gatacaaaat acgtagagta gtattatttt gtacgtttag gatgcctcca       480
     ggagagttgt taaattattt aattgtgaaa accaattcac ccctgttgaa ttggggggct       540
     gtgtttaccg ctccagggtt aatggtgaaa gagcagtttc aggatatggt aactatagtt       600
     accggtggta agttagaagg ttcaggtgta gctgggagta catcgctgaa ggcgatgagg       660
     aaggttgtta atttaggtgc tggtgttgct caaacccagc acatgtatgt tgtatttttt       720
     agcagtgaca gtatgaaggc catattagaa ggaagggtat atgtggcaat ataattgtat       780
     taatgtgttt gaagaaaata tcaaacactc attgaaataa aatcatttcc ctgctattat       840
     ttttaaatac atcgcgtagc gatattcttt gggccgtaag gcccaataag gacttatgtc       900
     caattataat tttgttattg ggatcaaata gtgtcatttg gcactatttg atcccgggac       960
     agcctggcac ggggcttagt att                                               983
//