Dbfetch

Dbfetch

ID   JN132458; SV 1; linear; genomic RNA; STD; VRL; 1188 BP.
XX
AC   JN132458;
XX
DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Papaya ringspot virus W isolate T4 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus W
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1188
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
XX
RN   [2]
RP   1-1188
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
XX
DR   MD5; 8c48657c3a16a4dfb73d03aeb71b8f2e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1188
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="T4"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2009"
FT                   /db_xref="taxon:12207"
FT   CDS             <1..1170
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:G9FIW4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIW4"
FT                   /protein_id="AEW91894.1"
FT                   /translation="AAMIESWGYGELTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVG
FT                   LRRLYTSERGSMDALEAYIDKYFERERGDSPELLVYHESRSTDDYQLVCSNTHVFHQSK
FT                   NEAVDAGLNEKLKEKEKQKEKEKEKQKEKEKDDASDGNDVSASTKTGERDRDVNVGTSG
FT                   TFTVPRIKSFTDKMVLPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRN
FT                   DYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQ
FT                   IMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAH
FT                   MQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1..306
FT                   /product="NIb protein"
FT   mat_peptide     307..1167
FT                   /product="coat protein"
FT   3'UTR           1171..>1188
XX
SQ   Sequence 1188 BP; 406 A; 205 C; 288 G; 289 T; 0 other;
     gcagcaatga tagagtcatg gggttatggt gagttaacac accagattcg caggttctac        60
     caatgggttc tcgaacaagc tccattcaac gaattagcta aacaaggaag ggctccatac       120
     gtctcagaag ttggattgag aagactgtac acaagtgaac gtggatcaat ggatgcattg       180
     gaagcgtata tagataaata ctttgagcgt gagaggggag actcacccga actactagta       240
     taccacgaat caaggagcac tgatgattat caacttgttt gtagcaatac acacgtgttt       300
     catcagtcca aaaatgaagc tgtggatgct ggtttgaacg aaaagctcaa agaaaaagaa       360
     aaacagaaag aaaaagaaaa agaaaaacaa aaagagaaag aaaaagatga tgctagtgac       420
     ggaaacgatg tgtcagctag cacaaaaact ggagagagag atagagatgt caatgttggg       480
     accagtggaa ctttcactgt tccaagaatc aaatcattta ctgacaagat ggttctacca       540
     agaattaagg gaaagactgt ccttaattta aatcatcttc ttcagtataa tccgcaacaa       600
     attgacattt ctaatactcg tgccactcaa tcacaatttg agaagtggta tgagggggtg       660
     agaaatgatt atggccttaa tgataatgaa atgcaagtga tgttaaatgg tttgatggtt       720
     tggtgtatcg agaatggtac atctccagac atatctggtg tttgggttat gatggatggg       780
     gaaacccaag ttgattatcc aatcaagcct ctaattgagc atgctacccc gtcatttagg       840
     caaattatgg ctcactttag taacgcggca gaagcataca ttgcaaagag aaatgctact       900
     gagaggtaca tgccgcggta tggaatcaag agaaatttga ctgacattag cctcgctaga       960
     tatgctttcg atttctatga ggtgaattcg aaaacacctg atagggctcg cgaagctcat      1020
     atgcagatga aagctgcagc gctgcgaaac actagtcgca gaatgtttgg tatggacggc      1080
     agtgttagta acaaggaaga aaacacggag agacacacag tggaagatgt caatagagac      1140
     atgcactctc tcctgggtat gcgcaactga atactcgcgc ttgtgtgt                   1188
//