ID JN129254; SV 1; linear; genomic DNA; STD; VRL; 2740 BP. XX AC JN129254; XX DT 08-NOV-2011 (Rel. 110, Created) DT 08-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate ToLCNDV-[Pum:IARI:06] segment DNA DE A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Phaneendra C., Mandal B.; RT "Tomato leaf curl New Delhi virus is associated with pumpkin leaf curl-a RT new disease in northern India"; RL Unpublished. XX RN [2] RP 1-2740 RA Phaneendra C., Mandal B.; RT ; RL Submitted (16-JUN-2011) to the INSDC. RL Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New RL Delhi, Delhi 110012, India XX DR MD5; 53f0782e91ff05e2f44c18ae5dd1599f. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA A" FT /host="pumpkin" FT /isolate="ToLCNDV-[Pum:IARI:06]" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="plant showing curling symptoms in the FT experimental field of IARI" FT /collection_date="May-2006" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:G8GEH9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G8GEH9" FT /protein_id="AER93211.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIGKNYSPDTVGYDLIRDL FT ILVLRAKNYGEATSRNHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1053 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G8GEI0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8GEI0" FT /protein_id="AER93212.1" FT /translation="MAKRPAEIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMFYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:G8GEI1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8GEI1" FT /protein_id="AER93213.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMVGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:G8GEI2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G8GEI2" FT /protein_id="AER93214.1" FT /translation="MQSSSHSKNHSIPVARTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT gene complement(1499..2674) FT /gene="AC1" FT CDS complement(1499..2674) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:G8GEI3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8GEI3" FT /protein_id="AER93215.1" FT /translation="MPYGVLPIYRTPDTNHIDKLRDAESKRQVLWLRHVVLEYMPKTNF FT LTYPKCSLTEEEALSQLQTLETPTRKKFIKICRELHEDGSPHIHVLIQFEGKYQCKNNR FT FFDLVSPSRSAHFHPNIQGAKSASDVKKYIDKDGDVLEWGVFQIDGRSARGGQQTANDA FT YAQAINTGNKDDALKVLKELAPKDYVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRV FT PAELVDWVSSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHLDLSPKVY FT SNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSS FT YKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPPEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8GEI4" FT /protein_id="AER93216.1" FT /translation="MGLRISMFSSNSKGNTNAKITDSSTWFPQVGQHISIRTFRELNQR FT RTSRNTSTKTETF" XX SQ Sequence 2740 BP; 745 A; 588 C; 613 G; 794 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cctatttagt gcgtggggat caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tctccaagag ataggaaaga actattcacc agatacagtc ggctacgatc 240 ttattcgaga tctcattctt gttctccgag caaagaacta tggcgaagcg accagcagaa 300 atcatcattt caacgcccgc atcgaaggta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag 600 cgattctgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 tctccccagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtgttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttttata tggcgtgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctactttt atgattcggt cacaaattaa taaatatcca gttttatatc atacgaagtc 1080 catacatcaa ttgttcgctc caatacatta tccaaaacat gataaactgc tcttattaca 1140 ttataaattc ctatgacacc taccatatcc aggtacttaa ggacctgggt tttgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg cctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatataatac gaacaaccac acggcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttc tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ctcttcgtcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgactggctt tccgtatttc gtgttgcttt 1740 gccagtcacg ttgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcttcattgc tatacacttt tgggctcaga tcaagatgtc 1860 cacacaagta attgtggggt cctaagcatc gagcccacat tgttttgcca gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac accacattgg 1980 acgagaccca atcgacgagt tctgccggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaac ctcggaagga ggttggaaaa tgcgatctaa attggtattt aaattgtgaa 2100 actgcagaac gtaatccttt ggggctaatt cctttaatac tttcaaagcg tcgtctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgttgacca ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatt 2280 tcttgacgtc cgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat ttttgcattg gtatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatcct cgtgaagctc tctacatatc ttgatgaatt 2460 tcttcctcgt cggagtttct agggtttgca attgggaaag tgcctcttct tcagttagag 2520 agcactttgg atatgtgagg aaattagttt ttggcatata ctctaaaacg acgtggcgaa 2580 gccataaaac ttgtcgtttt gattcggcgt ccctcaactt atctatgtga ttggtgtctg 2640 gagtcctata tataggtaag acaccatatg gcattattgt aattttgaaa agaaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //