Dbfetch
ID JN127346; SV 1; linear; genomic RNA; STD; VRL; 4435 BP. XX AC JN127346; XX DT 02-DEC-2011 (Rel. 111, Created) DT 02-DEC-2011 (Rel. 111, Last updated, Version 1) XX DE Scaevola virus A isolate WA-3 polyprotein gene, partial cds; and movement DE protein and coat protein genes, complete cds. XX KW . XX OS Scaevola virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; OC unclassified Betaflexiviridae. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4435 RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 0:0(2011). XX RN [2] RP 1-4435 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 3270d48d766a35df82d7cc734942d982. XX FH Key Location/Qualifiers FH FT source 1..4435 FT /organism="Scaevola virus A" FT /host="Scaevola calliptera" FT /isolate="WA-3" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:1046302" FT CDS <1..2751 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:G9FIH0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9FIH0" FT /protein_id="AEN25485.1" FT /translation="LESSGVPLNKFNVTIDFKRAGKLFRSLMDGRTGVHSHKLVKEGWR FT IMSGLNGAEDAQSFGKALVNGNLTKELVDSELKQFGVIMICGFAGSGKSKGVQNLLNKS FT FNSDDRALVISPRRVLAEDWKTKCKNSKIATFESALKKSFNEIQLVVLDEVNLFPNGYI FT DLVLTKKIMDSKDEVSGENFLLICLGDPLQASYFSENDRTFLDHSNDLRRVCGDKRLKY FT LYGTHRLPMAVASRFEVRTTNGEQTSPFHATIFPDLISCKKKNEEKGFKVQAVLVASFV FT EREIFAEHENVLTFGESQGMTFEYGAICLSEETKLVSDFHIMVALTRFRKGFSFFLSCR FT GNSDDFVKNLKMGLLSRFLEKNTSLKAFVQGMSQVKLELVELNLKGSGLDYVDREEKLA FT GDPWLKSSLFLGQRINYIDSEFTETSVVEPTPKVHIPVESDEYLSIELDKLVAREFREF FT KGRYEWSQQFKEENFPVLSQFRRGEAQCVNYEAIYPRHRADDDITFLAAVRKRMRFSNP FT ATERAKFHNAYSKGRMLLNQFLKFVPVKRERNSGLLMEALNEFESVKVSKDAATLTNHS FT DRSNPDWSPDFVRIFMKSQLCTKFEKRFCEAKAGQTLACFSHSILVFFSPWCRYMEKII FT NKYLPKNFYIHQKRSFDELNEFCKVHFNGDTCVESDYTAFDASQDHIVLSFEVQLMEHM FT GIDRVIIERYIELKCTLGSKLGSFAIMRFTGEFCTFLFNTLCNMAFTFCAYEIKGNEPI FT CFAGDDMCSLRNIPASKKFEKLLSKMSLKAKVCRTNRPMFCGWNLTFYGIVKEPCLVFE FT RLQVAREKGRLNEVIESYFLEFSYAYKLGERLNAVLCEDQLRYHQRLCRFFVKNKSLLK FT GESSKILSDLLYLSDEDGEVCSGIQRENRFRGYSNFKCEKLVSLQ" FT mat_peptide <1..2748 FT /product="replicase" FT misc_feature 253..1008 FT /note="UvrD-helicase; active site" FT misc_feature 1480..2577 FT /note="RdRP; active site" FT CDS 2663..3646 FT /codon_start=1 FT /product="movement protein" FT /note="ORF2" FT /db_xref="GOA:G9FIH1" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:G9FIH1" FT /protein_id="AEN25486.1" FT /translation="MARSVRAFRGKIASGDIPISNVKSSSVYSDITPFKRFSDLKLHIN FT EFVYRLDPELSDNEGFRIANVPLIPSDEVAAMRRDKSVNYVHWGALSVSIDALFRKKAG FT VTGICYVFDSRWKNAEQALCQSFEFSLDSGSATMITQPNFSVALSDNMISQCLNVAVIF FT NNLNFKREATPISIRVGMLYRYFDSFLSAVVLKDESNVEIDSNSAEKLYLDAVGINAEA FT VLEAFKYTEGVEMQQVRTQEFSVPSGLFGARKKFVKQRSFVPRDNTVPITFPGNKALMG FT RKMKGSVRSESVMSEENGSNIELEDEDRQGVEGTFERREKGLKWKE" FT CDS 3555..4136 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:G9FIH2" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:G9FIH2" FT /protein_id="AEN25487.1" FT /translation="MAAILNLRTKIDKELKEHLRGEKKVLNGKSDSEQYEIIKSIFSNI FT AIQGTSEETEFFDEDIDVTEYGDTKSFCKYNLKDVVSDIKSWKANHKEEKMRNLTFRQV FT CEAFAPEAKVGLMRLDASGIHTNLYQKMPDTCSAAPELAFDFNNGLNLSRLSKKEKKVV FT QNLNRRLFSSENAKAEVEAALDTVGDCLKL" FT 3'UTR 4137..4435 XX SQ Sequence 4435 BP; 1343 A; 739 C; 1057 G; 1296 T; 0 other; cttgaaagca gtggcgtgcc gctcaacaaa ttcaatgtca ctattgattt taaaagagcc 60 ggcaaactct ttagatctct catggatggt agaactggag tacatagcca caagctagtt 120 aaagaagggt ggagaattat gtcaggtcta aatggagctg aggatgcaca atcgttcgga 180 aaggctttgg tcaatggaaa tttgaccaag gaattggtgg attcagagct aaagcagttt 240 ggagtcatca tgatctgtgg gtttgctggt tcagggaaat ccaaaggggt tcagaaccta 300 ctgaataaga gcttcaattc tgacgacagg gcattggtaa tttcccctcg tagagtccta 360 gctgaggatt ggaagacaaa gtgcaaaaat tcaaaaatcg ccacctttga gagtgcactg 420 aagaaaagtt ttaatgagat acagcttgtg gtattggatg aggttaacct atttccaaat 480 gggtacatcg acctggttct aaccaaaaag atcatggact caaaagatga agtttctggg 540 gagaatttcc ttttgatttg ccttggagat ccacttcaag cctcatactt ctctgaaaat 600 gacaggactt ttctggacca cagcaatgac cttaggagag tctgcggtga caagaggttg 660 aagtacctgt atgggactca cagattacca atggctgtgg cgagcagatt tgaagtaaga 720 acaactaatg gagagcagac cagcccgttt catgccacca ttttccctga tcttatttct 780 tgtaaaaaga aaaacgaaga gaagggtttc aaggttcagg cagtgttggt tgctagtttt 840 gttgaacggg aaatctttgc agaacatgag aatgttttaa cctttggaga aagccaggga 900 atgacttttg agtatggtgc catctgcctt tctgaagaaa caaagttggt ttctgatttt 960 cacattatgg ttgctctaac tagattcaga aagggcttct ccttcttttt atcctgtaga 1020 ggtaactcag atgactttgt taagaacctt aaaatgggac tactaagcag atttttagaa 1080 aagaacacgt cgctgaaagc ctttgtgcag ggtatgtctc aggtcaaact tgaattagtg 1140 gaattgaatt taaagggttc aggtcttgat tacgtggata gagaagagaa acttgctggc 1200 gacccatggt tgaaatctag cctgtttctg gggcagagaa ttaattacat tgattctgaa 1260 ttcacggaaa cctctgtagt tgaaccaact ccaaaagttc acataccggt tgagtcagat 1320 gaatacctat ccattgaatt ggataagttg gtggctagag aatttcgtga gtttaaagga 1380 agatatgaat ggagccaaca attcaaagaa gaaaatttcc ctgtattgag ccagtttagg 1440 aggggagaag cccagtgtgt caattatgaa gctatatacc ccaggcatag agctgatgat 1500 gacattacct ttttggcggc agtcagaaag agaatgaggt tttcaaatcc agcaacagaa 1560 cgagctaagt ttcataacgc ttactcaaag gggagaatgc tgcttaatca atttttgaag 1620 tttgtcccag ttaaaagaga gagaaactca ggtttgttga tggaagcttt gaacgagttc 1680 gagagtgtta aggtttcaaa ggatgctgcc actttgacta atcattcaga tagatcaaac 1740 cctgattggt ctccggactt tgtgagaata ttcatgaaat cacaattgtg cacaaagttt 1800 gagaagaggt tttgtgaagc aaaagccggt cagactttgg cttgtttctc ccattcaatc 1860 ttagtcttct ttagcccttg gtgtagatat atggaaaaaa tcattaataa atatctaccg 1920 aagaactttt acatacacca gaaaagatct tttgatgaac tcaatgagtt ttgcaaagtt 1980 cacttcaatg gagatacatg tgttgaatct gactacacag cctttgatgc ctctcaggac 2040 cacattgtgc tctcttttga agtgcagctt atggaacata tgggaataga ccgtgtcatc 2100 attgaaaggt acattgaact caagtgtact ttggggagca aactggggag ctttgccata 2160 atgagattca ctggggaatt ctgcactttc ttgttcaaca ccctctgtaa catggcgttt 2220 acattttgtg cttatgagat aaaagggaac gaaccaattt gttttgctgg agatgatatg 2280 tgttccctca ggaacatccc ggcttcaaag aagtttgaaa agttgttgtc caaaatgagt 2340 ctgaaggcta aagtttgtag aacaaataga ccaatgttct gtgggtggaa tctcactttt 2400 tacggcattg tgaaagaacc ctgtctggtt tttgagagac ttcaggtagc tagagaaaag 2460 gggagactga atgaggttat tgagtcttat ttccttgagt tttcttatgc ctacaaatta 2520 ggtgagaggc tgaatgctgt tctctgtgaa gatcagttgc gttaccatca gagactctgt 2580 agattctttg ttaaaaataa gagtttgttg aagggtgaga gttcaaagat attatctgac 2640 ttgctttatt tgtctgacga agatggcgag gtctgttcgg gcattcagag ggaaaatcgc 2700 ttcaggggat attccaattt caaatgtgaa aagctcgtca gtttacagtg atataactcc 2760 ttttaaaaga ttctctgact tgaaactgca cataaatgag tttgtgtata gattagatcc 2820 tgagctgtct gacaatgaag gttttagaat agctaacgtt cccttaattc caagtgatga 2880 ggtggctgct atgagaagag acaagtccgt taattatgtg cattggggtg ctctatctgt 2940 ctccattgat gcacttttta ggaaaaaggc tggagtgacc ggaatatgct atgtttttga 3000 ttcaagatgg aaaaatgctg agcaagctct ttgtcaatct ttcgaattct cacttgatag 3060 tggctctgct acaatgatta ctcagcccaa tttttcagtt gctcttagtg ataacatgat 3120 atcacaatgt ttgaatgttg cagtgatatt caacaatcta aatttcaaaa gggaagcaac 3180 accaatatct atcagagtgg gaatgcttta taggtatttt gattctttcc ttagtgcagt 3240 ggtgctcaag gatgagtcaa acgtggaaat tgactctaac tctgcagaga aactctacct 3300 agatgcagtg ggtatcaatg ccgaagcagt acttgaggca tttaagtaca ctgaaggggt 3360 tgaaatgcaa caagttagaa ctcaggagtt ttccgttccc tcaggattgt tcggagcaag 3420 aaagaaattc gtcaagcaaa ggtcatttgt tccaagagac aacactgtgc ccatcacttt 3480 tccagggaac aaagctctaa tggggaggaa aatgaagggc tctgttaggt ctgagtctgt 3540 gatgagtgaa gaaaatggca gcaatattga acttgaggac gaagatcgac aaggagttga 3600 aggaacattt gagaggagag aaaaaggtct taaatggaaa gagtgacagc gagcagtatg 3660 agataattaa aagtattttc tctaacatag ctatacaggg tacatcagag gaaactgaat 3720 tctttgatga agatatagat gttacagagt atggtgacac caaatcattt tgtaaatata 3780 atttgaagga tgtagtttct gacataaagt cctggaaagc taatcacaag gaggaaaaga 3840 tgaggaatct gacttttcgc caagtgtgtg aagcttttgc tcctgaggca aaggtagggt 3900 taatgaggtt agatgctagt ggtatacaca ctaatttata tcagaagatg ccagacactt 3960 gttctgctgc gcctgagttg gcttttgact tcaataatgg actgaacctt tcaaggttgt 4020 ccaagaaaga gaagaaggtt gttcaaaatc tgaaccgtcg tctttttagt tctgaaaatg 4080 caaaagcaga ggttgaggct gctcttgata cagtgggcga ttgccttaag ctatagcaaa 4140 ctgactaaaa tagtccgaag acgttaaact accggctcca attgaatgac gccaattggt 4200 gttagtcggg ttgattcaat gtgtcatctg ttggatttct atagcctctt tgccaacagt 4260 attgtagagg ctttgtgtgt ttaatttaat gtgttcttgc ctagagaaat ccgaaagcga 4320 gaattcaggt taccaaccct atcggcagtg actgtgtgaa aacataaaac gactaggggg 4380 aggccctgag gacttgaacc atggagagtc tttaaagagt ccatgtgcct tattt 4435 //