ID JN127342; SV 1; linear; genomic RNA; STD; VRL; 7207 BP. XX AC JN127342; XX DT 02-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Onion yellow dwarf virus isolate Bate6 polyprotein gene, partial cds. XX KW . XX OS Onion yellow dwarf virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-7207 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-7207 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; c211d12aea8654af66cf5f4dc03dd047. XX FH Key Location/Qualifiers FH FT source 1..7207 FT /organism="Onion yellow dwarf virus" FT /host="Allium sativum" FT /isolate="Bate6" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:43130" FT CDS <1..6908 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:G9FIG6" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:G9FIG6" FT /protein_id="AEN25481.1" FT /translation="GLGEKKDTCIDYFKALIKSSFKRLDFKLMMIRDPYMILFALMTPT FT VMKRFLEDGSFTIAANIFLQQSDDLVYIATTLETLAQKLSSHKVYLSQFQEISCVAQEI FT LSRHSIFQNTRSSQQARDMLEILSGTSAMDAELHTRGYVVNTMKMQETKKKCYDAIYME FT LWQELSLSEKCAYEWEKLKCARRSLKISSLKDLSAQRDSVKNCLKQSSKFVVSGLKAQA FT SGFCSLIDRVKVKSIAVLSDFVTACFARVMKNITKYIQLTLLIALLLDVWKNLSNIIME FT HKRLKLIEAERLSKIKFRKIRALYDSLVVKLGHEPTREELLEYVTSIDSTLKDELESHG FT EQVIYQAKSKSETTLEQIVALCALMAMFFNTEKSDAVFKILSKIKNVFSSTDFPVQYQA FT LDTPIDVNEFLGLTVNFELAHGKELDLNNFDISFENYWKKSLLNGHVCHHYRSHGVFLE FT FTRATAEGVCNTITQSDQHEFLISGFVGSGKSTYMPSLLSNKGRILIVEPTRPLTENVY FT NGLSGDPFFQSVTMCMRGANHYGSGNISVMTTGYALHSLANNRGNIAQYDYIIIDECHV FT LDANAMALYCLLKDVNYKGKILKTSATIPGRESGFKLSTQHDVTLNIEESLTFDAFIQA FT QGTGSNACVTTRGDNILVYVSSYNEVDTLARKLSEHGHKVTKVDGRTMKLGGTRIETSG FT STTKKHFIVATNIIENGVTLDIDVVVDFGLKVGAVLDVDTRAIRYVKQPISHGERIQRL FT GRVGRIKKGHALRIGSTEKGIPDIPACIATEAAFLCFIYGLPLITQNVVVSALGKCTSR FT QARTMAAFELSPFYMKDLIKYDGSMHKQIHGALKSFILRDTEIQLKDSSIPYASTKDWL FT TVREYNQIGSNIHCEDNIKIPFMVNGIPESVHEKVWKACLDNAHSVRLSPLNSASAQKI FT SYTLSSDSSSILRTIGIIEELIKEEKQKSMQFQSLRNTPVGPNSFNLTYLTNMLKSKYM FT VDHSEENLETLYKARSQLIEFNTNYNPDMSVDTIRSYPYTAMVNYQSSNDVAQALQLKG FT KYDMRKISTDIIVSSVILFGGAWMAYDTFKHLMSSKVQYQAKNKRQIQKLRFRDSRDKK FT LNYAVANDDSTIEHYFGSAYTKKGKTKGTVRGMGRKMNRFYTMYGVDPTEYSIIRYVDP FT ITGNTCDDSVTEYSPKGIDELNAMRVEMLDDDVIDLQQFHRSDAQTYIAYYIKHGSDKA FT LKIDLTPHNPLMVCHHTASIAGFPEKEGVLRRTGPAVEVNISEVPKPNVYERKDSVSFE FT AKSACCGPRNYNAISSVICHLELKSDGNERKTFGIGYGPYIIANQHLFTRNNGTLKIKS FT QHGEFIIRNTCQLQLKPIDGIDVVLIKLPKDHPPFSSKLKFREPEEREKVCLVSVEFNP FT SITSALMSETSFTYNETNTRFWKHWITTKEGHCGLPIVSTKDGCVLGIHSLSDQKNSVN FT YFTTFPNNFQETYLSPTNVIDWVKGWKHNTDNIAWGSLKIQEDAPEALFKTTKLISDLI FT NSVTFQSSEHTWLTKHLNNNLKVVGCCPGNLITKHIVKGRCPMFQLYLTTNDDAREFFQ FT PLLGHYGKSMLNKQAYVKDFTKYSSVIETGSVDTDVFEASINDVVDKLKKGGMDQCNYI FT TDTMEIINSLNMKAAVGALYGGKKKDYFADYKESDYDKILEASCKRLYCGKMGVWNGSL FT KAEIRSIEKIALNKTRSFTAAPIETLLGGKVCVDDFNNKFYSCNLSIPSTVGITKFYRG FT WHNMLTALPDNWIYCDADGSRFDSSLTPYLLNAVLSVRLEFMEPWDVGEKMMSNLYTEI FT IYTAIATPDGSVVKKFKGNNSGQPSTVVDNTIMVMLSVQYALRKCGIAIDKQNEIIKYF FT CNGDDLLIAIHPTYESILDKFQQHFHELGLDYDFSNRSRSKEDVYFMSHRGLLRDGIFI FT PKLDKERVVSILEWDRADKPEHRLEAICASMIEAWGYPDLLHEIRKFYQWLLEQAPYNE FT IAQNGKAPYIAETALKKLFTNIDASEAELEKYYKVYMDLENEEVVPKEVRYQAGKGEDA FT AAQSSTSQQISKQKDKDVDAGTTGTFTIPRIKVLSDKMRFPKVGKTVVLNAEHLLAYKP FT EQIELYNTRATKQQFENWYNAIKKDYDVNDDQMKILLNGLMVWCIENGTSPNLSGNWTM FT MDGDEQVEYPLAPIVDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLTEL FT SLARYAFDFYEMTSKTPKRAKEAHMQMKAAAVRGATNRLFGLDGNVTTTEEDTERHTAA FT DINKNQHTLLGIKM" FT mat_peptide <1..1040 FT /product="P3" FT mat_peptide 519..692 FT /product="PIPO" FT mat_peptide 1041..1196 FT /product="6K1" FT mat_peptide 1197..3107 FT /product="CI" FT mat_peptide 3108..3272 FT /product="6K2" FT mat_peptide 3273..3854 FT /product="NIa-VPg" FT mat_peptide 3855..4580 FT /product="NIa-Pro" FT mat_peptide 4581..6134 FT /product="NIb" FT mat_peptide 6135..6905 FT /product="CP" FT 3'UTR 6909..7207 XX SQ Sequence 7207 BP; 2479 A; 1219 C; 1557 G; 1950 T; 2 other; taggattagg agagaaaaag gacacgtgca tcgattactt taaagcactg atcaaatcat 60 catttaaaag actggatttc aaactgatga tgatacgtga tccatatatg atattatttg 120 cactgatgac ccctactgta atgaagcgct tcttggagga tgggtctttt accattgcag 180 caaacatatt ccttcaacag agtgatgatt tagtgtacat agcaacgaca ctagagacat 240 tagctcagaa gcttagctcg cataaagttt atttgtccca attccaagaa atatcatgcg 300 ttgcacaaga gatacttagc agacactcta tatttcagaa cacaaggagt tcgcagcaag 360 caagagatat gctagagata ctaagtggga catcagcaat ggatgctgaa ttacacacga 420 gaggatatgt cgttaacacc atgaaaatgc aagagacaaa gaaaaaatgt tacgatgcaa 480 tttacatgga gttgtggcaa gaattaagtt tatcggaaaa atgtgcgtac gaatgggaaa 540 agctaaagtg cgcacgacgt tccttaaaaa tttccagttt gaaagatttg agtgcgcaaa 600 gagacagtgt gaagaattgt ttgaaacagt cttcaaagtt cgttgtgtcg ggactgaaag 660 cgcaagcttc aggtttttgt tctctgattg atcgagttaa ggttaaatct atagcagttc 720 tgtcagattt tgtaacagca tgtttcgcga gggtcatgaa aaatattaca aagtacatac 780 aattaacact gctaatagct ttattactcg atgtatggaa aaatctgtca aacatcataa 840 tggaacacaa aagactcaaa ctgatagaag ctgaaagact ctctaaaata aaatttagga 900 agattcgagc attgtatgac tctctagttg tcaaactggg tcacgaaccc acacgtgaag 960 aattattaga atatgtcact tcgattgatt cgacgctgaa agatgaactt gaatctcatg 1020 gagaacaagt aatttatcaa gcgaaatcaa aatcagaaac aacgctagag caaattgtag 1080 cactttgcgc attgatggca atgtttttca acactgagaa aagtgatgct gtgtttaaaa 1140 ttttatcaaa gataaagaat gtattttcta gcacggattt tcccgtacaa tatcaagcac 1200 ttgacacacc aattgacgtt aatgaattct tagggctaac agtgaacttc gaattagcgc 1260 atggtaagga gttagatctc aataactttg acattagctt tgaaaactat tggaagaaga 1320 gtttgctgaa tgggcatgtt tgtcatcatt atagaagcca tggtgtgttc ttagagttca 1380 cacgagctac agctgaaggt gtatgtaaca caattacaca aagtgaccag catgaatttc 1440 tcataagtgg atttgttggg tccggtaaat ctacatacat gccgagtttg cttagtaata 1500 aggggcgaat tttaattgta gaacctacga ggccactaac tgagaatgtt tataatggtc 1560 tgtctggaga tcctttcttt caaagcgtca cgatgtgtat gagaggtgca aatcactatg 1620 gatcaggaaa catatcagtg atgacaacag ggtacgcttt acactcactt gctaacaacc 1680 gtggaaacat tgcacaatat gactatatta taatcgatga gtgccatgta ctagacgcaa 1740 acgctatggc gttatattgt ttacttaaag atgttaatta caagggcaaa atactcaaga 1800 cttcagctac catacctggg cgtgaatctg gtttcaaatt gtctacacaa catgatgtaa 1860 cattaaacat agaggaaagt ttaacatttg acgcttttat acaagcacag ggaaccggat 1920 caaatgcatg tgtgacaact agaggcgaca atatattagt gtacgtgtcg agctataatg 1980 aagttgatac gctcgcacgt aaattatctg aacatggaca caaagtgacc aaagttgacg 2040 gtcgaacgat gaaacttggc ggcactcgaa tcgaaacaag tggcagcact acgaagaagc 2100 acttcatcgt tgccacgaat ataatagaaa atggtgttac acttgacatc gatgtggttg 2160 tggacttcgg attgaaagtt ggagcagttc tcgatgtgga cactcgagcc attcgttatg 2220 tgaagcaacc aatatcacat ggagagagaa tccaacgatt agggagggtc ggacgtatca 2280 agaaaggaca tgcattgaga atcggaagta cagagaaagg tataccagac ataccagcgt 2340 gtatagcaac ggaagctgca ttcctttgtt tcatatatgg attaccatta ataactcaaa 2400 atgtagtagt gagcgcactt ggaaagtgca caagcagaca agctcgaaca atggcagcct 2460 ttgaattatc accgttttac atgaaggatt taattaaata tgatggttca atgcataaac 2520 aaatacatgg tgctctgaaa tcatttattt tacgtgacac tgaaattcaa ttgaaagatt 2580 catcaatacc atatgccagt acaaaggatt ggctaacggt gcgcgagtac aaccagattg 2640 ggagtaatat tcactgtgaa gacaacatta agataccatt catggttaat ggcataccag 2700 agagtgtaca tgagaaagtt tggaaagcat gtttagataa cgcacactcc gtgcgattaa 2760 gtcctctcaa cagtgctagt gcacagaaga tttcttatac actttcaagt gatagttctt 2820 caattttgcg aacgattgga atcatagaag aattgattaa agaggaaaaa cagaagagca 2880 tgcaatttca aagtttgcga aacactccag ttgggccgaa ttccttcaac cttacatact 2940 tgacaaatat gcttaaatcg aaatatatgg ttgatcatag tgaggagaac ttagaaacat 3000 tatacaaagc aagaagtcaa cttattgagt tcaatacaaa ttacaatcca gacatgtctg 3060 tagacacaat tcggagttat ccatatactg cgatggtgaa ctatcagtca tcgaatgatg 3120 tggctcaagc cttgcaatta aaaggaaaat atgacatgcg gaaaatcagt actgatataa 3180 ttgtgagttc cgtgattttg ttcggtggtg catggatggc ctacgatacg tttaagcatt 3240 taatgagctc aaaagttcag tatcaagcca aaaataagcg tcaaattcaa aaactacggt 3300 ttagggattc gagggacaaa aagttaaatt atgctgtagc aaatgatgac tcaacgatcg 3360 agcattattt tggttcggca tatactaaga aaggtaagac aaaaggaact gtgcgtggaa 3420 tgggaaggaa aatgaataga ttttatacaa tgtatggtgt tgatcctact gagtattcaa 3480 ttattcgtta cgttgatcca ataacaggaa atacatgtga tgattcagta acggagtata 3540 gccccaaagg catagacgaa ctgaatgcga tgcgtgttga aatgcttgat gatgatgtaa 3600 tcgacttaca acagtttcac agatctgatg cacaaacata tatagcatat tatattaagc 3660 atggttctga taaagcactc aaaatcgatt taacaccgca caatccattg atggtttgtc 3720 accacacagc atctattgca ggtttccccg aaaaagaggg tgttcttcga aggactggcc 3780 cagctgttga agttaacatt tctgaagttc ctaaacccaa tgtttatgaa cgtaaagata 3840 gcgtgagctt tgaagctaaa tcagcatgtt gtggccctag aaattacaat gccatatcga 3900 gtgttatttg tcatcttgaa ttgaagagtg atggaaatga aagaaaaaca ttcggtattg 3960 gatatggacc ttatataatc gccaatcaac atctatttac aagaaataat ggtacactca 4020 aaattaagtc tcaacatggg gagtttatta ttagaaacac atgccaactg caattgaaac 4080 caatcgatgg aattgatgta gttctcataa aactgccgaa agatcatcca ccattttcga 4140 gtaagcttaa atttagagag cctgaagaga gggagaaagt ttgtttggtg agtgttgaat 4200 ttaatccgag tattacatca gcattgatgt cagaaacatc gttcacatat aatgaaacaa 4260 acaccagatt ttggaaacac tggataacga ctaaagaagg acattgtggt ctaccaattg 4320 tgtcaactaa ggacgggtgc gttttaggaa tacacagtct atcggatcag aagaactcag 4380 tcaactactt cacgacattc cccaacaatt tccaggaaac atatttgtca ccaacaaatg 4440 tgatagattg ggttaaagga tggaagcaca atacagataa tatagcatgg ggttctttga 4500 aaatccaaga agatgcaccg gaagcattgt tcaaaaccac gaaattaatt agtgatctga 4560 taaatagtgt gacctttcaa tcgagtgaac atacatggtt gaccaagcac ttgaacaaca 4620 atttgaaagt ggtcggttgt tgtcctggaa atctgatcac aaaacacatt gttaaaggaa 4680 gatgtccaat gtttcaacta tatttaacta cgaacgatga cgcaagagaa ttcttccaac 4740 ctctgttagg gcattatggg aagagcatgc ttaataaaca agcgtacgtt aaggacttca 4800 caaagtactc tagtgtcatt gaaactggtt ctgtagacac tgacgtattc gaagcatcca 4860 tcaatgacgt tgttgataaa ctcaagaaag gaggaatgga tcagtgcaat tacattacag 4920 atactatgga aattatcaac tctttgaaca tgaaagcagc agttggcgcg ttgtatggag 4980 gtaagaaaaa ggattatttt gcggattaca aggaaagtga ttacgacaag atcttagaag 5040 ctagttgtaa acgactatac tgtgggaaga tgggcgtctg gaatgggtca ttaaaggctg 5100 aaatacgttc tatagagaag attgcgctga ataaaactcg atcatttaca gcagctccaa 5160 ttgaaacact acttggtggc aaggtgtgtg ttgatgattt taataataaa ttctatagtt 5220 gcaatttatc aataccatca actgttggca taacgaaatt ttatagaggt tggcacaaca 5280 tgttgacagc cttgcctgat aattggattt attgtgatgc tgacggctct cgttttgaca 5340 gttcattaac accttattta ctaaatgctg tattgtctgt tcgacttgag tttatggaac 5400 cgtgggatgt gggtgagaaa atgatgagta atttgtacac tgaaataata tacacagcca 5460 tcgcaacacc tgatggttcc gtggtgaaga agtttaaagg taacaatagt ggtcaaccat 5520 ccactgttgt tgacaacaca attatggtaa tgctgagtgt acaatacgcc ttgcggaaat 5580 gtggtatagc gatagacaaa cagaacgaaa tcatcaaata cttctgtaat ggcgatgatt 5640 tattgatagc gatacatcca acatatgaaa gtatacttga caaattccaa cagcactttc 5700 atgaactcgg attggattac gacttctcaa ataggagtag gtcgaaagag gatgtatatt 5760 ttatgtcaca tagagggcta ctcagagacg gaattttcat accaaaatta gataaagaac 5820 gtgttgtttc aatacttgag tgggatcgag cagacaagcc cgaacatcga ttagaagcta 5880 tatgcgcgtc catgattgaa gcatggggtt accccgacct tttacacgaa atccgaaagt 5940 tttatcaatg gcttctggaa caagctccat ataacgaaat agctcagaac ggaaaagcac 6000 cttacatagc agaaacagct ctcaaaaagt tattcactaa tattgatgcg agcgaggcag 6060 agttagaaaa atactacaaa gtatatatgg accttgagaa tgaagaagtg gttcctaagg 6120 aagttcgtta tcaggcggga aaaggggaag atgcagcggc acaatcaagc acatcacaac 6180 agatttctaa gcagaaggat aaagatgttg atgctggcac tactggtacg tttacaattc 6240 ctagaataaa ggtgttatct gataaaatga gatttccgaa ggtcggcaaa actgttgtac 6300 tcaacgcaga acacttgttg gcatacaagc cagagcaaat tgaactgtac aatacaagag 6360 caacaaagca gcagtttgaa aactggtaca atgcaataaa gaaagattat gatgttaatg 6420 atgaccaaat gaagattttg ctaaatggtc taatggtttg gtgcattgag aatggaacat 6480 ctcctaattt gtcagggaat tggactatga tggatggcga cgaacaggtc gaatatccat 6540 tagcgccgat cgtggataac gcaaaaccga catttaggca aataatggca catttcagtg 6600 atgcagctga agcatatatt gaatatagaa atgccacaga gaagtatatg ccccgatacg 6660 gacttcagcg aaatttaaca gaacttagtt tggcgcgtta cgcattcgat ttttatgaaa 6720 tgacttcgaa aactcctaag cgagcaaaag aagcacacat gcaaatgaag gcggctgcgg 6780 ttagaggggc aactaaccgt ttgtttggcc ttgatggtaa cgtcaccaca acagaagagg 6840 acacggaaag acacacagct gcggatatta ataagaacca gcacacgttg cttggtatta 6900 aaatgtgaaa gcgcactttt gtctttagct ttatatatat atatggttat ataaggacgt 6960 acgtaatatg taattctctt catttcgttt aatctgactt caagcaacga aatgtggtgt 7020 accactagtt gtgacgaacg atacgattaa acattcgtga ttaatgtcga acttcatgag 7080 agtgatgtat cacgaggtga aatctttggc gtgaattacg aagacaaaaa aaaagatcgg 7140 aagagcggtt cagcgggaga tctawktagg tactaatgtg caaacgaacg aggaggtcgg 7200 aattaag 7207 //