ID JN127340; SV 1; linear; genomic RNA; STD; VRL; 5264 BP. XX AC JN127340; XX DT 02-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Leek yellow stripe virus isolate Bate4 polyprotein gene, partial cds. XX KW . XX OS Leek yellow stripe virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-5264 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-5264 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 11457acc4ddf62d13965342df02677bf. XX FH Key Location/Qualifiers FH FT source 1..5264 FT /organism="Leek yellow stripe virus" FT /host="Allium sativum" FT /isolate="Bate4" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:42004" FT CDS <1..4671 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G9FIG4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9FIG4" FT /protein_id="AEN25479.1" FT /translation="KIGETEKASWRVPPCIATEAAFYCFAYGLPVISDGVSTSLLENCT FT VPQARTMMQFELSIFFMFHLVKHDGSMHPAIHDRLKQYKLRDSEVVLNKTAIPHRGLTA FT WPTVEEMRRHGCSISQPDDVRLPFFVKDVPDKLYGDLYETLKKHSGDACFGKIRGISAS FT KIAYTLQTDPASIQRTIKILDKLYESELQKKAYFANVTSSSCSSFNYALTTITNAIRAR FT HMQDYTAENLSVIQNAKSQLLEFNNIRTPRMTEDALADYGALECMMYQSENEMSKFLGL FT KGRWNKSVIVKDIVLAGVTVIGSALMIYEYVKGKLGEPMDYQGKNHRQRQKLRFREARD FT SKHAYEIHGDDAQLQTYFGNAYTKKGKTSGKTVGAGRKMHRFYNIYGFDPTDYSFARYV FT DPLTGATLDESTVTDVSLVQDHFGTIRNQMRQSGDLEPEQIARNTRIECYYVNDLAKKV FT LKIDLTPHNPLQVSGKSNNVMGFPERKLDLRQTGAPVALSHDQLPPSKLDVGSFEFEGK FT SLLSGLRDYNPIAACVCKITNESDGVITHIFGIGYGPYVITNQHLFHRNNGLLRIHTHA FT GEYLVNNACSLKMYPIPERDIVIIRLPKDFTPFPQRLRFRPTRAGEHVCLVSSNFQTKS FT ISSVVSATSATAGTANKNFFKHWITTKHGQCGNPLVSVTDGCIVGIHSMASTVSSMNMY FT AGFPDNFVDDYLSNDLLEWTKGWKLSADKSCWDGITLVNNKAEGLFKLTKELFTLDDGQ FT WEFQSGHKDWMYNKLEGNLKAVGRTSGNLVTKHSVKGKCMLFQTYLSVQPEEAEYFTPL FT MGFYSKSALNKEAYIKDLSKYSGEISVGNVDCEAFERAFEKVVILMESKGFHECAYITN FT EHEILAALNMKAAVGALYSGKKRDYFVDFSDQDKHEIVKESCKRLFLGKMGVWNGSLKA FT ELRPIEKVSANKTRSFTAAPLDTLLGGKVCVDDFNNQFYSRHFDLPWTVGMSKFRKGWD FT TLLRKLPDNWVYCDADGSQFDSSLSPYLINAVLKLRLHFMEEWDVGETMLKNLYTEIVY FT TPIATPDGTIVKKFKGNNSGQPSTVVDNSLMVVFSMYYAMEMSTMENIHDKCVFFVNGD FT DLIIAVEPGSEAFLDSLQALFHQLGLNYNFNSRTRDKEKLCFMSHMGLLQDGVYIPKLD FT KERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILDQAPYSELSTL FT GKAPFISEAALRNLYTDCEATEAELARYLELYDSDVHIEETFEYQAGEELDAGMSANKN FT HKSGADKTNEQRSPSTSQTGIQTGVGSLELNTNKDRDVNVGTTGTFSVPRIKQIPQKGM FT AIPMERGKSLLNLDHLLQYKPSQLCISNTRATRMQFNNWMERVQEEYGVTKSEMSIILN FT GLMVWCIENGTSPNINGVWTMMDGDEQVEYPLRPIVEHAKPTLRQIMAHFSALAEAYIE FT MRNSEQAYMPRYGLQRNLTDMGLARYAFDFYEVTSRTPVRAREAHAQMKAAALRSSRPR FT LFGLDGNVTTTDEDTERHTAHDVNARMHHLDGAHMQ" FT mat_peptide <1..810 FT /product="CI" FT mat_peptide 811..969 FT /product="6K2" FT mat_peptide 970..1545 FT /product="NIa-VPg" FT mat_peptide 1546..2271 FT /product="NIa-Pro" FT mat_peptide 2272..3810 FT /product="NIb" FT mat_peptide 3811..4668 FT /product="CP" FT 3'UTR 4672..5264 XX SQ Sequence 5264 BP; 1635 A; 1017 C; 1259 G; 1353 T; 0 other; aaaattggcg aaacggaaaa agctagctgg cgtgtgccac catgcattgc cacagaagca 60 gcattctatt gtttcgcata cggattaccc gtaatttcgg atggtgtgtc cacaagtcta 120 ctcgagaact gcacagtccc gcaagcaaga acgatgatgc aattcgagct aagtatattt 180 ttcatgttcc atcttgtgaa gcatgatggc agtatgcatc cagccattca tgatcgtcta 240 aagcagtaca agctgcgtga ttcggaagtc gtgttgaaca aaacagccat cccacacaga 300 ggcttaactg cgtggcctac agtcgaagag atgaggcgac atggttgttc tataagtcag 360 ccagatgatg tgagattacc tttcttcgtt aaagacgttc cagataaatt atatggtgac 420 ctttatgaaa cgttgaagaa gcatagcggt gatgcatgtt ttggaaagat tcgcggaata 480 agcgctagca agatagcata tacactccaa acggatccag catctatcca gcgaacgatc 540 aaaatactgg ataagttgta tgaaagtgag ctacaaaaga aggcatactt tgcaaatgtc 600 acatctagtt cttgttcatc ctttaactac gctctcacaa ctatcacaaa tgccattcga 660 gctcgacaca tgcaagatta cacagctgag aacttaagcg ttattcaaaa cgctaaaagt 720 caattgctag agtttaacaa cataaggacg ccaaggatga ctgaggatgc actagctgat 780 tatggagctc tggagtgtat gatgtatcaa tctgaaaacg aaatgagcaa gttccttggg 840 ttgaaaggtc gttggaataa aagtgtcatt gttaaggata tcgtgttggc aggagttaca 900 gttattggta gtgctctgat gatatatgaa tatgtcaaag gaaagctagg agaacctatg 960 gactaccaag gaaagaacca cagacagcgg caaaaactac gatttcgtga ggcacgtgac 1020 tcgaagcacg cctatgagat acatggcgat gatgctcaac tacaaacgta ctttggtaat 1080 gcgtacacga agaaagggaa gacatccgga aagacagttg gagctgggag gaaaatgcat 1140 cggttttaca acatttatgg ctttgacccc actgactact cattcgcacg ttacgttgat 1200 ccactcacag gggcaacctt ggatgagagc actgtaacag atgtgagttt ggtgcaggac 1260 cacttcggaa ccattcgaaa ccagatgagg caaagtggag atctagaacc ggaacaaata 1320 gcgaggaata cgcgaattga gtgttattac gtcaatgatc tagcgaagaa agtactcaaa 1380 attgacttaa ccccacataa cccacttcag gtgagtggaa aatcgaataa tgtcatgggt 1440 tttccagagc ggaaattgga tcttaggcaa accggcgcac cagttgcatt gtcccacgat 1500 cagctaccac catcgaagct ggatgttggg tcgtttgaat ttgaggggaa atcgctactc 1560 agtggacttc gtgattacaa ccccatagcg gcgtgtgtgt gtaaaataac aaatgaatcg 1620 gatggagtca taacacacat tttcggtatt ggatacggtc catatgtcat cacaaatcaa 1680 catttgttcc acagaaacaa cggattgttg cgaattcaca cacatgcagg ggaatatctg 1740 gttaataacg cgtgctcact caaaatgtat ccgatccctg aacgagacat tgtaataatc 1800 cgcttgccaa aggacttcac accatttcca cagaggctta gatttcgtcc gactcgagct 1860 ggtgagcacg tttgtctagt gagttcaaac ttccaaacaa agagtatatc gagtgttgtc 1920 tcagcaacga gtgcgacggc tggaacggct aataaaaatt tcttcaaaca ctggattact 1980 acaaagcacg gacagtgtgg aaatccttta gtatctgtga cagatggctg cattgttgga 2040 attcacagca tggcgagcac agttagttca atgaacatgt acgcaggttt cccagataac 2100 ttcgtggacg attatctcag taacgactta ttagagtgga cgaaaggctg gaaacttagc 2160 gcggataaga gttgctggga cggcatcacg ctagtgaaca ataaagctga aggcttgttt 2220 aaactcacaa aggaattgtt cactctagat gatggacagt gggagtttca atcaggtcac 2280 aaggattgga tgtataataa actagaggga aatttaaaag ctgtcggacg cacaagtggg 2340 aatttagtga caaagcattc agtcaaagga aagtgcatgt tgtttcagac ttatttgtca 2400 gttcagccgg aagaagccga atattttaca ccgctcatgg gcttctattc aaagagtgct 2460 ctcaataagg aagcatatat aaaagatctg agcaaatatt caggagagat tagcgttggc 2520 aacgtggact gcgaagcatt tgagcgagct tttgaaaagg ttgtgattct gatggagagt 2580 aagggattcc atgagtgtgc gtatattaca aatgagcatg aaattttagc agcattgaat 2640 atgaaggcag cggttggggc cctatattca ggaaagaagc gtgactattt tgtagatttc 2700 tccgaccaag ataagcacga aattgttaag gagagctgca aacgactatt tcttggtaag 2760 atgggcgtgt ggaatggatc tttgaaagct gaacttagac cgattgagaa agtttctgca 2820 aataaaactc gttcattcac ggcggcacca ttggacacac ttcttggtgg taaggtttgt 2880 gtggacgatt ttaacaatca attctacagc cgacatttcg atctaccctg gacagttggc 2940 atgagtaaat ttcgcaaagg atgggacact ctactgagga aactacctga caattgggtt 3000 tactgtgatg cggatggttc gcaatttgat agctcactat caccgtacct aatcaacgct 3060 gtcttaaaac ttcgattgca ctttatggaa gagtgggatg ttggagagac catgctcaag 3120 aatctataca cggagattgt ttataccccg atagcaacgc cagatggcac gattgtgaag 3180 aaatttaaag ggaataatag cgggcagcca tccactgtag ttgacaattc attaatggtt 3240 gttttctcga tgtattacgc catggagatg agcactatgg aaaacattca tgataagtgt 3300 gttttcttcg ttaacggtga tgacttaatt atagcggtgg aaccaggttc tgaagcattt 3360 ctcgatagct tacaggcttt atttcaccag cttggtctta actacaattt caacagtcga 3420 acgcgtgata aagagaagtt gtgcttcatg tcacatatgg gcttactaca agacggtgtt 3480 tatataccga aattagataa agagcgcata gtgtccatat tagaatggga tcgtgctcaa 3540 caacccgagc ataggttgga agccatttgc gcagctatga tcgaagcatg gggctaccca 3600 gatcttctgg atcgtattcg aaagttttac tgttggattc ttgaccaagc accatatagt 3660 gaattaagca cattgggcaa agcgccattc atctctgagg cagcgttacg caacttatat 3720 actgattgtg aagctacaga agcggaatta gcaaggtacc ttgagctcta tgatagtgat 3780 gtgcacatag aggaaacatt tgagtaccaa gctggtgaag agttggatgc aggaatgtca 3840 gcaaacaaga accataaaag tggtgcggat aagaccaacg agcaacgaag cccatcaacg 3900 tcacaaactg gaattcagac cggtgtggga agtttggaat tgaacacaaa taaagatagg 3960 gatgtgaatg ttggtaccac aggaaccttt agcgtgccac gaataaaaca aataccacaa 4020 aagggaatgg caatccccat ggaaagggga aagtcgttac tcaacttaga tcacctgtta 4080 caatataaac caagtcaatt gtgcatatca aacactagag cgacgcgaat gcaattcaat 4140 aattggatgg aaagagtaca ggaagaatat ggtgttacaa agagtgaaat gagcatcatt 4200 ttgaacggtt taatggtttg gtgcattgaa aacggaacgt caccaaacat aaacggagta 4260 tggacgatga tggatggcga tgagcaggtt gaatatcctc tacggcctat cgtcgagcac 4320 gcaaaaccaa ctctacgtca aataatggcg catttctcag cactagctga agcttatatt 4380 gagatgagga attcagaaca agcttacatg ccaagatatg gcctacaaag aaacttaaca 4440 gacatgggtc tcgcacgcta cgcatttgac ttttacgaag tcacgtcaag aacaccagtt 4500 agagcgcgtg aagctcatgc acaaatgaaa gcagcggcct tgcgtagttc aaggccaaga 4560 ttgtttggac tagacggcaa cgtcacaacc acggatgagg acacggagag gcacacagca 4620 catgacgtga atgcacgtat gcaccatctt gatggtgcgc atatgcagtg atgtttcggt 4680 ttataaccgg ttatgggctt ccacgtaaaa agcctcgagt gccaaacttg tattttggct 4740 agtgtagtgg aactatgatt cactcgttca aggcagtttc tactttaagg atgacttgag 4800 aattaatagc tctcaatgcc agccacattg gtggctacca agagtcaaca cttggtttga 4860 agctgatcat ctgaagatct atcccggtta cggttatgta aagaaggtga actcaattgt 4920 taaggatggt aagtctgaaa cctttatggt gtataagcag cctgaatttt gatacctcac 4980 ctttacccta cgacggagtg ctactttaaa gactagctag gattgagacc gaattctcac 5040 gtgctggcat ggccagcggc tgatcgccta acgattagtt gaccacttta tagtcaattg 5100 gaaacccgta gtatcctatc cttacctaat atcgtaagtt ttatttactg gtgtagtgtg 5160 gtgcaaccac cttataaaca ctttgaatat taggatcgag ctgttcatat gaaggcacta 5220 agagtggttg accatgtgtg cgttcttatg ttgcagtaag agac 5264 //