ID JN127339; SV 1; linear; genomic RNA; STD; VRL; 5563 BP. XX AC JN127339; XX DT 02-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Leek yellow stripe virus isolate Bate3 polyprotein gene, partial cds. XX KW . XX OS Leek yellow stripe virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-5563 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-5563 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; a7e7bb910966294b0ffb43bc95e8adc4. XX FH Key Location/Qualifiers FH FT source 1..5563 FT /organism="Leek yellow stripe virus" FT /host="Allium sativum" FT /isolate="Bate3" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:42004" FT CDS <1..4970 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:G9FIG3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G9FIG3" FT /protein_id="AEN25478.1" FT /translation="DRKFKVSKVDGRTMKSGKIEIITEGTSTNKHFIVATNIIENGVTL FT DVDVVVDFATKVVPELDEDAHMIRYNKKSISYGERIQRMGRVGRHKRGTVLKIGETEKA FT SWRVPPCIATEAAFYCFAYGLPVISDGVSTSVLENCTVPQARTMMQFELSIFFMFHFVK FT HDGSMHPMIHDRLKQYKLRDSEIVLNKTAIPHRGLTAWPTVEEMKRHGCSITQPDDVRL FT PFFIKDVPDKLYGDLYEVVKKHSGDACFGKIRGMSACKIAYTLQTDPASIQRTIKILDK FT LYESELQKKAYFANVTSSSCSSFNYALTTITNAIRARHMQDYTAENLSVIQNAKSQLLE FT FNNIRTPKMTEDALADYGALECMMYQSENEMSEFLGLKGRWNKSVIIKDIVLASVTAIG FT GVLMMYEYVKGKLEEPMDYQGKNYRQRQKLRFRDAHDSKHAYEIHGDDAQLQTYFGSAY FT TKKGKKSGNTVGAGRKMHRFYNVYGFEPTDYSFARYVDPLTGATLDESTVTDLSLVQDH FT FGTIRNQMRQSGDLEPDQISRNTKVECYYVNDLAKKVLKIDLTPHNPLRVSEKSNNVMG FT FPERTLDLRQTGAPVAVSYNQLPPSKRDIGTFEFEGKSLLSGLRDYNPVAACVCKIINE FT SDGVTTHIFGIGYGPFIITNQHLFRRNNGLLRIHTHAGEYLVNNACTLKMHPIPERDII FT IIRLPKDFTPFPQRLRFRPTRVGEHVCLVSSNFQTKSISSVVSETSATAGTANKNFFKH FT WITTKHGQCGNPLVSVTDGCVVGIHSMASTVSSMNMYVGFPENFVDDYLSNDLLEWTKG FT WKLSADRSCWDGITLVDSKAEGLFKLTKEMFTLDDGQWEFQSGNKDWMYNRLEGNLKAV FT GRTSGNLVTKHSVKGKCMLFQTYLSVEPKEAEYFTPLMGAYSKSALNKEAYIKDLSKYS FT GEISVGNVNCEVFERAFDKVVALMESKGFHECAYITNEHEILASLNMKAAVGALYSGKK FT REYFADFSNDDKYEIVKESCKRLFLGKMGVWNGSLKAELRPIEKVMANKTRSFTAAPLD FT TLLGGKVCVDDFNNQFYSRHFDLPWTVGMSKFRKGWDTLLRKLPEHWVYCDADGSQFDS FT SLSPYLINSVLKLRLHFMEDWDVGETMLRNLYTEIVYTPIATPDGTIVKKFKGNNSGQP FT STVVDNSLMVVFSMYYAMEMSDIEDIHNKCIFFVNGDDLIIAVEPGSEAFLDSLQNLFH FT QLGLNYSFDSRTRNKEELCFMSHMGLLQDGIYIPKLDKERIVSILEWDRAQQPEHRLEA FT ICAAMIEAWGYPELLDRIRKFYCWILDQAPYSELSTLGKAPFISEAALRNLYTDCKATE FT SELARYLELYDSDAPAEDTFEYQAGEEMDAGAQANKTQKSGADKSIEQRIPPNSQAIVH FT GKSDGSGSSDLSMGKDRDVNVGTTGTFSVPRIKQISQKGIAIPMDGGKSILNLDHLLRY FT KPSQLCISNTRATRTQFMAWKARLQDEYGVTASEMSIILNGLMVWCIENGTSPNINGVW FT TMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMPRYGLQRNLT FT DMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTMDEDTERHT FT AHDVNARMHHLDGAHMQ" FT mat_peptide <1..1100 FT /product="CI" FT mat_peptide 1101..1259 FT /product="6K2" FT mat_peptide 1260..1835 FT /product="NIa-VPg" FT mat_peptide 1836..2561 FT /product="NIa-Pro" FT mat_peptide 2562..4100 FT /product="NIb" FT mat_peptide 4101..4967 FT /product="CP" FT 3'UTR 4971..5563 XX SQ Sequence 5563 BP; 1730 A; 1038 C; 1340 G; 1455 T; 0 other; tggatcggaa atttaaagtt tcaaaagttg atggtcgaac tatgaaaagc gggaaaattg 60 aaataattac ggaaggcacc tctactaaca agcatttcat agtggcgaca aatataattg 120 agaatggagt gacgctcgac gtggacgtcg tagtggattt tgcaactaag gttgttccag 180 agcttgatga ggatgcacac atgattcggt acaacaaaaa gagcatatca tatggggagc 240 ggatacagcg aatgggacgt gtaggacgac ataagcgagg aacagtgctt aaaattggtg 300 agacagagaa agctagttgg cgtgtgccac catgtattgc aacagaagca gcattctatt 360 gctttgcata tggtttacct gtgatttcag atggagtctc cacaagtgta cttgaaaatt 420 gcacagtccc acaagcgaga actatgatgc aatttgaatt gagcattttc tttatgttcc 480 actttgtaaa gcacgatggt agtatgcatc caatgatcca cgatcgtttg aaacaatata 540 aactgcgtga ctcggaaatt gtcctgaata agacagccat tccgcacaga ggcctaactg 600 cttggcctac agtcgaagaa atgaagcggc atggttgttc cataactcaa ccagatgatg 660 tcagattgcc tttctttatt aaggacgtgc cagataaatt atatggtgat ttatatgaag 720 tggtgaagaa acacagcggc gatgcatgct ttggaaaaat tcgaggaatg agtgcttgta 780 agattgcgta caccctacaa acagatccag catctatcca gcgaacgatc aaaatactgg 840 ataagttgta tgaaagtgag ctacaaaaga aggcatactt tgcaaatgtc acatctagtt 900 cttgttcatc ctttaactac gctctcacaa ctatcacaaa tgccattcga gctcgacaca 960 tgcaagatta cacagctgag aacttaagcg ttatccaaaa tgcaaaaagt cagctacttg 1020 agtttaataa tataagaaca ccaaagatga cagaggatgc gttggccgac tacggcgctt 1080 tggagtgcat gatgtaccaa tctgaaaatg aaatgagtga attccttggt ttgaaagggc 1140 gttggaacaa aagcgttatc ataaaggaca tagtgcttgc aagcgttacc gctattggtg 1200 gtgttctaat gatgtacgaa tatgtgaaag gaaaattaga ggagccaatg gattatcaag 1260 gaaagaatta tagacaacgc caaaaactgc gattccgcga tgcacatgat tcgaagcacg 1320 cttacgaaat acatggggat gacgcacaat tacaaactta ttttggtagt gcttacacga 1380 agaaagggaa gaaatctgga aatacagttg gagctgggag aaagatgcat cgattttaca 1440 atgtctacgg attcgagcct actgactatt catttgcacg ttatgttgac ccactcacag 1500 gtgccacttt ggatgagagc accgtaacag atctgagctt agtgcaagac cattttggaa 1560 ctattcggaa tcaaatgcgg cagagtgggg acctagagcc agatcaaata tcgcgaaata 1620 cgaaagtcga gtgttactat gtcaatgatt tggcaaagaa agttttgaag attgacttga 1680 ccccgcacaa tccacttcga gtgagtgaga agtcgaataa cgtgatgggc tttccagaaa 1740 ggacactaga tcttaggcaa acaggcgcgc cagtcgcagt atcgtacaac cagttaccac 1800 cttcgaaacg ggatattggt acgtttgagt ttgagggcaa atcattattg agcgggcttc 1860 gtgattacaa tcctgtggca gcttgtgtat gcaagataat aaacgaatca gacggagtca 1920 ccacacacat ctttggtata ggatatggtc catttatcat tacgaatcaa catttatttc 1980 gtagaaataa tgggctactt cgaatacaca cgcatgcagg tgaatatctt gttaataacg 2040 cgtgtacgct taaaatgcat cccatacctg agcgcgatat cattataatt cgcttgccaa 2100 aggactttac gccatttcca caacgtctaa gatttcgacc aactcgcgtc ggtgaacacg 2160 tatgtttagt tagttcaaat ttccaaacga agagcatctc aagcgtcgtg tcagaaacaa 2220 gtgcaacagc tggaacagca aacaaaaatt tctttaagca ttggattact acgaagcatg 2280 gacagtgtgg aaacccttta gtgtctgtaa cagatgggtg cgtcgttggc attcacagca 2340 tggcgagtac agttagttca atgaacatgt acgttggctt tccagaaaac tttgtggacg 2400 attatcttag taatgacctg ttagaatgga caaagggatg gaaactgagt gccgacagga 2460 gctgttggga tggaattaca ctagtggata gtaaagctga aggcttattt aagctcacaa 2520 aggagatgtt cactctcgat gatggacagt gggaatttca gtcagggaat aaagattgga 2580 tgtacaacag gttggaagga aatttgaaag ctgttggtcg cacaagtgga aacttagtaa 2640 caaagcactc ggtcaaaggg aaatgtatgc tatttcagac ttatttgtcc gtggagccaa 2700 aggaagcaga atatttcaca ccactaatgg gtgcctactc aaagagtgca ctcaacaaag 2760 aagcgtacat caaagattta agtaaatact caggtgaaat tagtgttggc aatgtcaatt 2820 gcgaagtgtt tgagcgagct tttgataaag tggtggcttt gatggagagt aaaggcttcc 2880 atgagtgcgc ctatatcaca aatgagcatg aaatactggc atcgttgaat atgaaagcgg 2940 ctgttggggc actgtactca ggaaagaagc gtgaatattt tgcggatttc tccaatgatg 3000 ataaatatga aattgtcaaa gaaagttgca agaggttgtt tcttggaaaa atgggtgtgt 3060 ggaatggttc tctgaaggct gaacttcgac caattgagaa ggtcatggcc aataaaacac 3120 gttcgtttac tgcagcacca ttggatacac ttcttggagg aaaagtttgt gtggatgatt 3180 ttaacaacca attctacagc cgacacttcg atttaccttg gacggttggt atgagtaaat 3240 ttcgcaaagg gtgggatact ctactgagga agctgcctga gcattgggtg tactgtgatg 3300 cagatggatc tcagttcgat agctctttgt caccctactt gataaactct gttttaaaac 3360 ttcgactaca tttcatggag gattgggatg ttggggagac tatgcttaga aacctgtaca 3420 cagagattgt ttataccccg atagcaacac cagatggcac aattgttaaa aagttcaagg 3480 gcaacaatag tggacaacca tccaccgtag ttgacaattc actaatggtt gtcttctcca 3540 tgtactacgc tatggaaatg agcgatatag aagacattca caataaatgc attttcttcg 3600 tcaatggcga cgatttgatc attgctgttg aaccaggatc tgaagccttc ctagatagtt 3660 tacaaaatct gtttcaccag cttggtttga attacagctt tgatagtcga acgcgcaaca 3720 aagaagaatt atgctttatg tcacacatgg gtcttctaca agatggcatc tacataccga 3780 aactggataa ggagcgaata gtctcaatac tggagtggga tcgtgctcag caacctgagc 3840 ataggttgga agctatctgc gcagccatga ttgaagcatg gggctatccg gaactcttag 3900 accggattcg gaaattttat tgttggattc ttgatcaggc accgtatagt gagttgagca 3960 cattaggcaa agcaccattc atctctgagg cagccttacg taatttatac accgattgca 4020 aggctacgga gtctgaatta gcaagatatc ttgaactata tgatagtgat gcgcctgcag 4080 aagacacatt tgagtatcaa gcaggcgagg agatggacgc aggagcgcaa gcaaacaaga 4140 cccagaagag tggtgcagat aagtcgatag agcaacgaat tcctccaaac tcacaagcta 4200 ttgtacatgg gaagagcgat ggtagcggta gttcagatct gagcatgggc aaagataggg 4260 atgttaatgt tggtactaca ggaacgttta gtgtaccacg gataaaacaa atctcgcaga 4320 aaggtatagc gattccaatg gatggaggaa aatcaattct caacttagat cacctcctac 4380 gatacaaacc tagtcagcta tgtatatcaa acacaagagc taccagaact cagtttatgg 4440 cctggaaagc aaggttgcag gatgagtatg gtgtcactgc gagtgaaatg agtattattt 4500 taaatggctt gatggtgtgg tgcattgaaa atggaacttc accaaacata aatggagtct 4560 ggacaatgat ggatggcgag gaacaggttg aatttccttt gcgaccagtc gtggaacacg 4620 cacaaccaac tttgcggcaa ataatggcgc atttctcagc acttgcagaa gcttacattg 4680 agatgagaaa tgcagagcag gcatacatgc cgaggtatgg actacaaagg aatcttacag 4740 acatgagtct cgcacggtac gcatttgact tttatgaagt cacatcaaga acaccagtta 4800 gagcgcgcga ggctcatgca cagatgaaag cagcagccct gagaaattca aggccaaggc 4860 tgtttggatt ggacggcaac gtcacaacga tggatgagga cacggagagg cacacggcac 4920 atgacgtgaa cgcacggatg caccatcttg atggtgcaca tatgcagtga tgtttcggtt 4980 tataaccggt tatgggcttc cacgtaaaaa gcctcgagtg ccaaacttgt attttggcta 5040 gtttagtgga actatgattc actcgttcaa ggcagtttct actttaagga tgacttgaga 5100 attaatagct ctcaatgcca gccacattgg tggctaccaa gagtcaacac ttggtttgaa 5160 gctgatcatc tgaagatcta tcccggttac ggttatgtaa agaaggtgaa ctcaattgtt 5220 aaggatggta agtctgaagc ctttatggtg tataagcagc ctgaattttg atacctcacc 5280 tttaccctac gacggagtgc tactttaaag actagctagg attgagaccg aattctcacg 5340 tgctggcatg gccagcggct gatcgcctaa cgattagttg accactttat agtcaattgg 5400 aaacccgtag tatcctatcc ttacctaata tcgtaagttt tatttactgg tgtagtgtgg 5460 tgcaaccacc ttataaacac tttgaatatt aggatcgagc tgttcatatg aaggcactaa 5520 gagtggttga ccatgtgtgc gttcttatgt tgcagtaaga gac 5563 //