ID JN127338; SV 1; linear; genomic RNA; STD; VRL; 6251 BP. XX AC JN127338; XX DT 02-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Iris mild mosaic virus isolate Bate2 polyprotein gene, partial cds. XX KW . XX OS Iris mild mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-6251 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-6251 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; fdac2d49269d4c0c19876f8c2118e657. XX FH Key Location/Qualifiers FH FT source 1..6251 FT /organism="Iris mild mosaic virus" FT /host="Iris xiphium" FT /isolate="Bate2" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:206392" FT CDS <1..6222 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:G9FIG2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR039560" FT /db_xref="UniProtKB/TrEMBL:G9FIG2" FT /protein_id="AEN25477.1" FT /translation="FHDLFRFVQIVSICCMFIAILETLQRMRSTYLSSVMKAEQFEYQT FT KQDQVEHLYKLLCMKLGVKPTYAEFYKFVIEINPDLKPYLYEIEEKEVEHQAAKRESEV FT RLEQIVAFTALVLMVFDNERSDCVYRVMNKFKNIVSIADQDVNHQSVDDTVDNFDENET FT ISFELDSSDPVRQTLMSTTFSKWWDNQLSLNRTMPHYRTEGHFMEFTRNTCASVVNNIV FT HNDHKDILLRGAVGSGKSTGLPAGLCTRGKVLVIEPTKPLCQNVLCQLRADPFHLSPSL FT MMRDTSVFGSTPIMIMTSGFALHYFANNPIKLKDYQFVLFDECHVLDANAMAYRCLLEE FT HQFEGKIIKVSATPPGREVEFTTQYPVDVRVEEILSFREFISSLGTGANADITNVADNI FT LVYVSSYNEVDSLAKMLLDKGYMVTKVDGRTMKNGPTDIVTRGSKGKKHFVVATNIIEN FT GVTLDIEAVVDFGTKVVPELCVDNRRINYTKCNISYGERIQRLGRVGRCKPGVALRVGI FT TNKNMSTIPPIIATEAAFLCFTYGLPVMTAQVSLSLLANCTVQQARVMKLFELPTFFMQ FT DLVHHDGTMHPAIHDLLKRYKLRESEIVLNKRAIPYACIHDWADIRHYNAIGANLSIHP FT DVKIPFFCKDLPELLLEKLWNEILQNRSDACFRTLTTHNAARVAYKLKTDVNSLQRTIN FT IIDMLIIEEMRKKSYFDSLVTNTCTSASFSLQSISNLLTSRYKKNHTLENISILTAAKA FT QLLDFRAACAENVVNLGASTTKIRDKIIYNGALETVLHESRDDVIKTLGLQGKWNGTLL FT TRDILVCLGAVGGGIWLLYQYLKDFMNETVNHQAKSKRQRQKLKFRDAHDKKLGRIVED FT DDSGAVEHYFGEAYAKKGKKGGQTRGMGKKTRRFVNMYGFDESEYTYIRFVDPITGEMK FT DENIMTDIALVQEHFGDLRREYIVEDKILPESIRSRPGIIAYFVKDQTSPILRVDLTPH FT IPLKVCDNNNTIAGFPEYEGVLRQTGRPTKLSYAELPKMEVDHEAKSLNRGLRDYNPIS FT KAVCLLENRSDGHSIHIHGIGFGSYIITNRHLFKRNNGNLVIKSTHGEFVVPNTVTMKT FT SPVPDCDIVIVQLPKDFPPFPTKLKFREPEKNDQVCMVGTNFQEKFLSSTISSTSYIQQ FT VKNTQFFKHWIDTKDGQCGLPLVSTRDGHIVGLHSLTNMKLEYNCFAAITTELTNMLNS FT QSHIEWKRGWLYNPNDISWGIMQLKESTPSGLFKPTKSIHELAADLMREQSGTNDHWFE FT NQLHCNLKAVGYSTSQLVTKHVVKGKCALFARYLDVTPEAMQFFGPLMGAYQKSRLNRI FT AYAKDALKYATPITVGNVDTDSFEIATEDTIQILRDVGFQRCNYITDPMEIVDNLNMKA FT ATGALYTGKKKDYFKDYTGVDFERILQESALRLYSGKKGIWNGAIKAELRPIEKVLADK FT TRTFTAAPLDTLLAGKICVDDFNLQFYDLHTKGPWSVGISKFACGWDTLLRKLPDGWIY FT CDADGSRFDSSLTPYIINAVPKIRLAFMEEWDIGEQMIRNLYTEIVYTPILTADGTIVK FT KFKGNNSGQPSTVVDNTLMVILAMQYALRRLGLDATEQKANCVYFANGDDLVVAVSPNY FT TYILDNLQKYFEELGLNYDFCNRCTKREDLWFMSHRGMLRDNMYIPKLEKERIVSILEW FT DRATEPAHRLEAICASMVEAWGYDDLIHEIRKFYAWVLEQAPYNVLASEGKAPYISDYA FT LRRLYTEEQMPQENLDQYLRALVDVAKERDEDPQFVEHQSGATGTVDAADPFKRNQHPT FT RTSELQPTTESATTSQRTQLDKDVNVGTSGTFRVPRLKGLSSKLSIPKVRGNAVVNLPH FT LLQYNPNQEQLSNTRATDEQFSIWYEGVKSDYDVTDDEMHIIMNGLMVWCIENGTSPNL FT NGMWVMMDGDTQVTYPIKPLLDHAQPTLRQIMHHFSNLAEAYIEKQNYEKPYMPRYGRI FT RNLTDMSLARYAFDFYEVTSRTPVRAREAHMQMKAAALRNASTKLFGLDGKVGTQIEDT FT ERHTAEDVNQHMHNLLGVRGVM" FT mat_peptide <1..288 FT /product="P3" FT mat_peptide 289..447 FT /product="6K1" FT mat_peptide 448..2376 FT /product="CI" FT mat_peptide 2377..2535 FT /product="6K2" FT mat_peptide 2536..3099 FT /product="NIa-VPg" FT mat_peptide 3100..3825 FT /product="NIa-Pro" FT mat_peptide 3826..5385 FT /product="NIb" FT mat_peptide 5386..6219 FT /product="CP" FT 3'UTR 6223..6251 XX SQ Sequence 6251 BP; 1988 A; 1172 C; 1402 G; 1689 T; 0 other; ttccatgatt tgtttcgttt tgtacaaatt gtatctattt gttgtatgtt tatagcaata 60 ttagaaactc ttcagcgcat gcgtagtaca tatcttagca gtgtcatgaa agcagaacaa 120 ttcgaatatc aaactaagca ggatcaagtg gagcatctat ataaattact atgcatgaaa 180 ttaggtgtga aacccacata cgctgagttt tataagtttg taatagagat taacccagac 240 ttaaaacctt atttgtatga aattgaagaa aaagaggtcg aacaccaggc cgcaaaaaga 300 gaaagcgagg ttagattaga acagattgtg gcattcactg ctttagtgtt aatggtattt 360 gataacgagc gtagtgactg tgtatataga gttatgaata agtttaagaa tatagtgagt 420 atagctgacc aagatgtgaa tcatcagagt gtggatgaca ctgttgataa tttcgacgag 480 aatgagacga taagttttga attagacagc agtgacccag ttcgacaaac actaatgtcc 540 acgacttttt cgaagtggtg ggacaatcaa ttgagtctga atcgcacaat gccgcattac 600 cgaacagaag gtcacttcat ggaattcaca cgaaacactt gcgctagtgt tgtgaacaac 660 attgtgcata acgatcacaa ggacattctt ttacgtgggg ctgtgggatc gggcaagtcg 720 acaggtttac ctgccggtct ttgcacacgc ggaaaagtct tggttatcga accaactaaa 780 ccactgtgtc agaacgtact gtgtcagttg cgtgcagatc catttcatct gagtccatcg 840 ctcatgatgc gtgatacatc cgtctttggt tctacaccaa taatgatcat gactagtggc 900 tttgctttac attactttgc aaacaacccg attaaactga aagattatca attcgtgctg 960 tttgatgaat gccatgtatt agatgcgaat gctatggcat accgatgctt gcttgaggaa 1020 catcaatttg aagggaaaat tatcaaagtg tcagctacgc cacctggacg tgaagttgaa 1080 tttactactc agtaccctgt tgatgttcgt gttgaagaaa ttctctcatt tcgtgaattt 1140 attagctcac ttggtacagg tgcaaatgca gatataacta atgttgcaga taatatatta 1200 gtgtatgtat ctagttataa tgaagtagat tctcttgcta agatgttatt agacaaaggt 1260 tatatggtga cgaaagttga tgggcggaca atgaaaaatg gtcctactga cattgtcaca 1320 cgtggatcaa agggtaagaa acattttgtc gtagcaacta atataataga gaatggagtt 1380 acgttggata tagaagcagt tgttgatttt ggcacaaaag tcgtacctga attatgtgtt 1440 gataatagac gtataaatta tacaaaatgt aacattagtt atggcgaacg tatacagagg 1500 ttaggtagag ttggtaggtg caagccaggc gtagcacttc gagttggcat aacaaataaa 1560 aacatgagta ccattccacc cataattgcg acagaagctg cttttctttg tttcacatac 1620 ggactcccag ttatgacagc acaagttagt ttaagtttgt tagctaattg tacagttcaa 1680 caagcacgtg ttatgaaatt atttgaattg cccactttct tcatgcagga tctagtacat 1740 cacgatggca ctatgcaccc agccatccat gatttgttga agcgctacaa gttgcgtgaa 1800 agtgagatag tcctaaataa gcgcgcaatt ccatacgcat gtatacacga ctgggctgac 1860 attaggcatt ataacgcgat tggggctaat ctttctatac atccagatgt aaaaatccct 1920 ttcttttgta aagatttacc tgagttgtta ttagaaaaac tgtggaatga aattttacaa 1980 aatagaagtg atgcttgttt taggacacta acgacacata atgcagcacg tgtagcatat 2040 aagttaaaaa ctgatgtaaa ttcactacag cgtactatta atattataga tatgttaata 2100 atagaggaga tgcggaagaa gtcatatttt gattcactag ttactaatac atgcacaagc 2160 gcttctttct cattacaatc gattagtaat ttgctaacat cgcgatacaa gaagaatcat 2220 acactagaga acattagcat tctcacagca gctaaggcac aactgcttga ctttcgagct 2280 gcgtgtgcgg agaatgtagt taatctaggt gcaagtacca cgaaaatacg agataagatc 2340 atatataatg gtgcgctcga gacggtgtta cacgaaagtc gtgatgatgt gattaagaca 2400 cttggtcttc aagggaagtg gaatggtacg ctgctcacac gtgacattct agtgtgcctt 2460 ggagcagttg gaggtggcat ctggttgcta taccagtact tgaaagactt catgaatgaa 2520 actgtcaatc atcaagcaaa gagtaaacga caacgacaga aactaaaatt tcgtgatgcg 2580 catgataaga aacttgggcg catagtggaa gatgacgatt ctggagcggt tgaacactat 2640 tttggtgaag catacgctaa gaaagggaaa aagggaggtc agactcgtgg catgggaaag 2700 aaaacccggc gatttgtgaa catgtatggt tttgatgaat cagagtatac atatattcga 2760 ttcgttgatc ccatcacggg tgagatgaag gacgagaaca taatgactga tatagcatta 2820 gtccaagaac actttggtga tttgcgccgc gaatatattg ttgaagacaa gattctcccg 2880 gaatcgatac gctcacgccc tggtattata gcatacttcg tcaaagatca aacatctccg 2940 attctacgag tagatttaac accgcatatt ccactcaaag tgtgcgataa caataacaca 3000 attgcagggt ttccagagta tgagggagta ttgcgacaaa ctggccggcc aacaaagctt 3060 tcatatgctg aactgcccaa aatggaagtt gatcatgaag cgaaatcgct gaataggggt 3120 ttgcgtgact ataaccctat ttcgaaagca gtttgcctac ttgaaaaccg ctctgatgga 3180 catagtattc atatacatgg tatcggattc ggctcataca ttatcacgaa taggcatctc 3240 tttaagcgaa ataatggcaa tcttgtgatt aaatccacgc atggagaatt tgttgtccca 3300 aacactgtga ccatgaaaac atctcccgtg cctgattgtg acatagtgat agttcagctg 3360 cctaaagatt tcccgccatt tccaaccaaa ttgaaattta gggaacctga aaagaacgat 3420 caagtgtgca tggttggaac aaacttccag gaaaagtttc tttcgagcac tatttctagc 3480 acgagttaca tccagcaagt caagaacaca caattcttta aacactggat agatacaaag 3540 gatggtcaat gtggattacc tttagtgtcg acacgtgacg ggcacattgt tggattgcat 3600 agcttgacaa acatgaaact ggagtacaat tgcttcgcag ccatcacaac tgagctgact 3660 aatatgttaa actctcaatc tcatattgag tggaaacgtg gttggctgta taatccaaac 3720 gacattagct ggggaatcat gcaattgaag gagagcacgc ctagtggttt gtttaagccg 3780 acgaagagta tacatgaact agctgcagat ctcatgcggg agcagtctgg cactaacgat 3840 cattggtttg aaaatcaatt acactgcaat ttgaaagccg ttgggtacag cactagtcag 3900 ttagttacga aacacgtagt gaaaggaaag tgtgcattat ttgcgcgcta tctggatgtg 3960 accccagaag ctatgcaatt ctttggacca ttgatgggtg cataccaaaa gagtcgttta 4020 aatcgaattg cttatgcaaa agacgctcta aaatatgcta caccaatcac agttggaaat 4080 gtggatactg acagttttga aattgccact gaggacacaa ttcaaattct acgtgatgtt 4140 gggtttcaaa gatgtaacta cataacagat ccaatggaaa ttgtggacaa tttgaatatg 4200 aaagctgcaa ctggtgcttt gtacacagga aagaagaagg attatttcaa agactacact 4260 ggtgtagact ttgaaaggat acttcaagag agtgcattgc ggctgtatag tggtaagaaa 4320 ggcatctgga atggggcaat caaagcagaa ctacgaccaa ttgagaaggt gttagctgac 4380 aagacacgaa cctttaccgc tgcaccgtta gacactctcc ttgctggaaa aatctgtgtg 4440 gatgatttta acctacaatt ctacgattta cacacgaagg gtccttggag tgttggcatt 4500 tctaaatttg cttgtggttg ggatacgtta cttcgaaaac tacctgatgg ttggatttat 4560 tgtgatgccg atggcagtcg gtttgatagt tcactaaccc cgtatattat caacgcagtt 4620 cccaaaattc gactagcatt tatggaagaa tgggacattg gtgaacaaat gatccggaac 4680 ttgtacacgg agattgtata taccccaatt ctcacggctg acggaaccat tgtcaagaaa 4740 ttcaaaggga ataatagcgg acagccttca acagttgtcg ataacacact tatggtgatt 4800 cttgcaatgc aatatgcact acgaaggctg ggactagatg caactgagca gaaagcaaat 4860 tgtgtatatt ttgcgaatgg tgatgacttg gttgttgctg tgtctccaaa ttacacatac 4920 atacttgaca acctgcagaa atacttcgaa gaacttggac tcaattatga cttctgcaat 4980 agatgcacaa agcgtgaaga cttatggttc atgtcacata gagggatgtt gcgtgataac 5040 atgtacatac caaaactcga aaaagagaga attgtctcca tacttgaatg ggacagagcc 5100 acagagccag cgcaccgact tgaagcaatt tgcgcatcaa tggttgaggc atggggttat 5160 gacgatctca tacacgagat acgaaaattc tacgcatggg ttttggaaca ggcaccctat 5220 aatgtactgg caagtgaagg taaagcacca tacatttcag actatgcgtt gcgtcgcctt 5280 tacacagagg aacaaatgcc ccaggagaat ttagatcaat atctacgcgc acttgtggat 5340 gttgctaaag agcgtgacga agatccacaa ttcgtggaac accaatcagg agcaacgggc 5400 actgtagatg cagcagatcc atttaagcgg aaccagcacc ctacacgcac cagtgaacta 5460 caaccgacca cagaatccgc aacaacttcc cagcggacac agctcgataa agatgtcaat 5520 gttggaacta gtggtacgtt tcgtgtacca cggctgaaag gtttgagctc gaaactgtct 5580 attccgaaag ttaggggtaa tgcagtagtt aacttaccac atttactaca gtataatccc 5640 aaccaagaac aactttcaaa tactagagct acggatgaac agttttcgat ttggtatgaa 5700 ggggttaaaa gtgactacga cgtcactgat gatgagatgc acatcataat gaatggacta 5760 atggtgtggt gtattgagaa cggaacatct ccaaatctca atggtatgtg ggtcatgatg 5820 gatggagaca ctcaggtgac atatccaatc aaaccactgc ttgaccatgc acaacctaca 5880 ctacgtcaga tcatgcatca tttcagtaac ttggcagaag cgtacattga aaaacagaat 5940 tatgagaaac catacatgcc aaggtatgga cgaattcgaa accttaccga tatgtcacta 6000 gcacgctacg cttttgattt ttatgaagtg acatcgcgca caccggtgcg cgctcgtgaa 6060 gcgcatatgc aaatgaaggc agcagcgcta cgcaacgcca gtacgaaact ttttggactg 6120 gacggtaagg tcggcacaca aatagaggac acggaaagac acacggctga agatgttaat 6180 cagcacatgc acaacctgct tggtgtgcgt ggcgttatgt aacgtgtttg tccacagatt 6240 atttagctta a 6251 //