ID JN127337; SV 2; linear; genomic RNA; STD; VRL; 4616 BP. XX AC JN127337; XX DT 02-DEC-2011 (Rel. 111, Created) DT 23-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Cycas necrotic stunt virus isolate Lily1 segment RNA2, complete sequence. XX KW . XX OS Cycas necrotic stunt virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-4616 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-4616 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX RN [3] RC Sequence update by submitter RP 1-4616 RA Wylie S.J.; RT ; RL Submitted (19-OCT-2012) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 3d429127c412b3d46f545a4068c297b1. XX CC On Oct 19, 2012 this sequence version replaced gi:344922807. XX FH Key Location/Qualifiers FH FT source 1..4616 FT /organism="Cycas necrotic stunt virus" FT /segment="RNA2" FT /host="Lilium longiflorum" FT /isolate="Lily1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:173976" FT 5'UTR 1..426 FT CDS 427..4296 FT /codon_start=1 FT /product="polyprotein 2" FT /db_xref="GOA:G9FIG1" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G9FIG1" FT /protein_id="AEN25476.2" FT /translation="MSAHLKVLPSTQKDGNTCGVYCRCAGATPPMVLQVTSQRVDFPDC FT PKGRIVCTNRCIRHGGKGFSEFEERKWVPGPVCQQCGGTGIEQVGVELLHLHTAAKRAK FT AYQNALKVDVPDEVLLYAKYYWDTQRRFTGGMPNVPELATFDAWLQALARCALAPEYHF FT RNTHRFSGSGAHDEKFGGPMSFRFLPVCTHCVQLVNNWYIAKFKPHLEEETDWWKDLVK FT PRMGNPVHEIGPNRKPKYVESHRIPPPLNGDEFANFLYTCQCAKLAFDIERAETEENFQ FT DALDTLEEDFYDIDSTMLKRDLLNADARVVKRAVILRRKRRPTRTSIYSMKGQPIVTFS FT ASDLISCLGQVLNTLPTMKMDREAIEDQQDHLEDKQGGEILTTPQFIEVLRKKKREVRE FT KEFDDSTQGKLLHAKDFTLSKHDVFLANSVLDGLRKSKMVQRFAGKCATSTKITVDLTD FT KEEVVRYEPKELVSEGFRQTFNVLNRPEYNALNKLAEAGWKEAKSVVLNLHIRSYLPQQ FT MNAYAFCVIMWGHSSDAQEAALSGSYVYLGDGEATMLQLPLLCEYVGHNLQDFEAYTRS FT LVLSTVFPEFSGIADGKAIFGITSIEFTEYLPTSHAGITHERDSWDAMLRNHAGEKRRF FT LAGFNVVDTIEKGNGKGFSFPDFDLKAVPRHQAVVRTLEDQDVAPILSKTKSMRVKTFG FT SFRAGNIPVNFLGAPSNGQIVSRHSVSENAGYSVGDMKSAENFTFTQLITMPAASTKGN FT VLAGVDILANARTTMSGFYMRWLQKGYVDTNLKLICHLPRAPFAGISFFVLIDGTGYLA FT KDAPISFTEEEILSYPLHLVTTSDVSSYEFVLDWHRYIGQVPFAEENAFLRPTLFLVAC FT VSSTLALSARVEFYLEAQSVGEELPRTLAPSPVLSYPFQNSFLEDLDLFLAPKRLALGE FT RETTIIPLSFAKFKKSGDAILYSHAAARLAHFQGIGGVLHGVVYLVGSQLVASKLRISM FT WSKKQHIQHQAMNVHIDTDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAI FT KAPFDMIFKIRGFSPDAPMCRTINFTQRFGWFAVEPTATTGAIKLKIWPVSNHLESDDM FT KVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFR FT GHCRNFSIYEGKATVPLELGTFAGPTPLRKLDFKYRNWIRFTTPKGKSISSIFCAIEVL FT PGFSFYGRTGSPRLSVAGTTVPPIVDASTSSLQGGDEDTGDQYAAALGRGRGRGSRPGP FT NPIRG" FT mat_peptide 427..2622 FT /product="movement protein" FT mat_peptide 2623..4293 FT /product="coat protein" FT 3'UTR 4297..4616 XX SQ Sequence 4616 BP; 1175 A; 967 C; 1111 G; 1363 T; 0 other; ggttgacttt actttcccga aattgcaaac aactgtcgtt attgatcttg ttttgccatt 60 tcttttgtat tacacaactg ctctttcaat tgatgtctgg gatagcgccc agcaatttta 120 tgagccacag gatagcgcct gtggaaaatt tgtgaatctt gggatagcgc ccaagaaaca 180 tctgaagtca aggatagcgc cttgcatttt attttgttgt actttatttt gttttactta 240 cttttgacca tctcatgggt ggttttggcg ctctctttgc ctcctttcag gaggttgtgg 300 tcaagaaatt gaccaaagcg aaggcggact tgtgggccgt caatactgag gttccttcag 360 aacccttgct gtcctcctgg gaggggatag ctcgtaagca gcaactccca gtgcttgcag 420 cggactatgt ccgctcattt aaaggtcctg ccatccaccc agaaggatgg caacacctgt 480 ggtgtttact gcaggtgtgc tggtgcaaca ccacctatgg tgttgcaagt tacttcacaa 540 agggttgatt tccctgattg ccccaagggc cgaattgttt gcactaatag gtgcatcaga 600 catgggggca aaggcttctc agaatttgag gagcgtaaat gggtgccagg acctgtctgt 660 caacaatgtg ggggtactgg aattgagcaa gtgggggttg agttactgca cctccacaca 720 gcggccaagc gagcaaaggc gtaccaaaat gcgcttaaag tggatgtccc tgatgaggtg 780 cttctatatg caaaatatta ttgggacaca caacgccgat ttactggtgg catgcctaat 840 gtgcccgagt tggcaacttt tgatgcttgg ttgcaagcac ttgcacgctg tgcactagcg 900 cctgaatatc attttagaaa cactcataga ttctcaggct ctggtgcaca tgatgaaaaa 960 tttggcgggc caatgtcatt tcgattcctg ccagtttgta cacattgtgt gcaattggta 1020 aataattggt acattgccaa atttaagccc caccttgaag aggaaactga ttggtggaag 1080 gatcttgtga aaccgcgtat gggaaatcct gttcatgaaa ttggaccgaa caggaagcca 1140 aaatatgtgg aatcacatag gatccctccc ccactcaatg gggatgagtt tgccaacttt 1200 ctctacactt gccagtgtgc aaagttggcc tttgatattg agcgcgcaga aactgaggaa 1260 aattttcagg atgcgctcga cactttggaa gaagatttct atgatattga tagcactatg 1320 cttaaaagag atcttctcaa cgcggatgca cgtgttgtta aacgtgcagt cattctacgc 1380 aggaagcggc gcccaactcg cacatccata tattcgatga aggggcaacc gatagtcaca 1440 ttttccgcta gtgacttaat ttcctgcctt gggcaagttc tcaacacgct tccaacaatg 1500 aagatggata gggaagctat tgaggaccaa caggaccacc ttgaggacaa gcagggtggc 1560 gaaattctca ccacaccgca atttattgaa gttttgcgga aaaagaagcg ggaggtgaga 1620 gaaaaggaat ttgatgattc cacccaaggg aaactcttgc atgcaaaaga tttcacgctc 1680 tctaagcatg atgttttcct tgccaactcc gttttggatg gcctgcgcaa atcaaagatg 1740 gttcagcgct ttgctggcaa gtgtgcaact tccacaaaaa taactgtgga ccttacagat 1800 aaagaagaag ttgtacgcta tgagccaaag gagttggttt ctgaaggctt ccgccaaaca 1860 tttaatgtac tcaaccgtcc ggagtacaat gctttaaata agctggctga agcagggtgg 1920 aaggaagcaa agagtgtggt cctgaatttg catatcaggt cctatttgcc ccagcaaatg 1980 aatgcgtacg cattttgcgt gatcatgtgg ggacactctt ctgatgcaca ggaggctgct 2040 ttatctggta gctatgtgta tctaggtgat ggagaagcaa caatgctcca attgcctttg 2100 ttatgtgagt atgtaggcca taacttgcaa gattttgagg cctacacaag gagtctagtt 2160 ctctccactg ttttccctga gttttcaggt attgcagatg ggaaggctat atttggtata 2220 acttctattg agtttactga atatttgcct acttcccatg cgggtattac gcatgagcgt 2280 gattcctggg atgcaatgct tagaaaccac gctggagaga agcggagatt tctagcagga 2340 tttaacgtgg tggacacaat tgaaaaagga aatggtaagg gtttctcctt cccagatttt 2400 gatctgaaag ctgtcccccg tcatcaggcc gttgtgcgca ctctcgagga ccaagatgtg 2460 gcacccattc tgtctaagac taaaagcatg agggtcaaga catttggaag ctttagagcg 2520 ggtaatatcc ccgtgaattt cttaggcgcc ccatctaatg gtcagattgt gtccaggcat 2580 agcgtttctg aaaatgctgg atacagtgtg ggtgatatga agagtgctga aaattttact 2640 ttcacccaac ttatcacaat gccagctgct agcacaaagg gtaatgtgct ggcaggggtc 2700 gatatcttgg cgaatgcacg aaccactatg agtggtttct atatgcgctg gttgcaaaaa 2760 ggttatgttg atacaaatct taagttgatt tgtcacctac cacgtgctcc atttgccggg 2820 atttctttct ttgtgcttat tgatggtacg ggatatcttg caaaggatgc cccgatcagt 2880 tttactgagg aagaaatcct ttcttaccca ctgcatttgg ttactacatc cgatgtctcc 2940 agttatgagt ttgtgctaga ttggcatcgg tatataggcc aggtaccatt tgcagaagaa 3000 aatgcttttt tacggcctac tctcttccta gtagcatgtg tctcctccac actagctctt 3060 tctgcaagag ttgagtttta tcttgaagca cagagtgtgg gagaggaatt gccacgaacc 3120 ttggcaccaa gtccagttct ctcttatcct tttcagaatt cgtttcttga ggacttggac 3180 ttgtttttgg ccccaaaacg cttggcgctc ggggagagag agacaaccat catcccactt 3240 tcatttgcta aatttaagaa gagtggtgat gcaattttgt actcccatgc agcagcgcgc 3300 ttggctcact tccagggaat tggaggtgtt cttcatggtg tggtctacct agtaggctca 3360 cagttagttg ctagcaagct gcgcatctct atgtggagta agaagcagca cattcagcat 3420 caagcaatga atgtgcacat cgatactgat acaggagtgg catttgattt accaatcaaa 3480 gatgctttct atgcctcttc tgtatatggt gattctgggg ctgtcataca agttacatgt 3540 ttgtgttccc caatgtcacc taatgctatt aaagccccct ttgatatgat tttcaaaata 3600 aggggctttt ctcctgatgc acccatgtgc cgcacaataa attttactca gcggtttggg 3660 tggtttgctg ttgaaccaac cgccaccacg ggggccataa aacttaaaat ttggcctgtg 3720 tctaaccact tggagtccga tgacatgaaa gttaccgggt acaccaatgc ttttttgcaa 3780 atgtgtcaaa ctagcactat gcattttggc tcggtaatta ttcatttttc ttggactcta 3840 tttggtggta ctacaaatgc tgccactgct ggtggggtcg ttactatagc agagggtttt 3900 ggtcctgagg aagagaattt ccgtggccat tgcagaaatt tttccatata tgaaggaaaa 3960 gccacggtgc ctcttgaatt gggaacgttt gctggtccca ctcctcttag gaaactggat 4020 ttcaagtatc gcaattggat tcgtttcaca acccctaagg gcaaaagtat ttctagcatc 4080 ttctgtgcta tagaagtgct accagggttt tctttttatg gacgcactgg tagccctaga 4140 cttagcgtcg ctggtactac tgtgccgcca attgtagacg caagtactag tagtcttcag 4200 ggtggagatg aagatactgg agatcaatat gctgctgcct tgggcagagg gagaggacga 4260 ggttctcgcc caggaccaaa ccccattagg ggttgatttt taggtatttc ttaaagagaa 4320 tatcccccca gaccttgatg gggttctgtt tcaaggtaaa tttggtgtcg agataaccaa 4380 attaaaataa ctcgacttat ccatctgaat gatgcgcgtt tattgcacac gcggcgaagc 4440 tcaagtgcat gtgcattttc ttttggtttg ttcctttggt ttgtgtttta gttgttgtgt 4500 gcttttaatt ctgttttaag tggcgacaaa tgaggttcgt ccttttcctc attttgcttt 4560 gttggacaca aaaagatttt ctatttcttt tgtatattag aaaacccaaa aaaccc 4616 //