ID JN127336; SV 1; linear; genomic RNA; STD; VRL; 6259 BP. XX AC JN127336; XX DT 02-DEC-2011 (Rel. 111, Created) DT 24-FEB-2012 (Rel. 111, Last updated, Version 2) XX DE Cycas necrotic stunt virus isolate Lily1 polyprotein 1 gene, partial cds. XX KW . XX OS Cycas necrotic stunt virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-6259 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-6259 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 0f15fd1fe4fadce58bd0d6cdb9ad2029. XX FH Key Location/Qualifiers FH FT source 1..6259 FT /organism="Cycas necrotic stunt virus" FT /segment="RNA1" FT /host="Lilium longiflorum" FT /isolate="Lily1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:173976" FT CDS <1..5957 FT /codon_start=3 FT /product="polyprotein 1" FT /db_xref="GOA:G9FIG0" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:G9FIG0" FT /protein_id="AEN25475.1" FT /translation="VPIAGKRPDLVSTIYAFITGEAQIWLSAPRVCLLARRIIELSDWY FT PHELLAEELKKISDEENCKEAEREINLKYLEISKATENMRANGLFGKLKGKAQDLWSGI FT VDFASHPFRKYLATAADFAEGFSHKVVDAVMSRVNAAITQFAAQLDIARTLVDQLITHV FT KRWYTSLCTSFDDSLKLLGKWAGYALGLIVGVGVCHLVEVICAHMGFPLGGVITGVFTT FT AYMGWLFVKTPVGSELVMSLRMQVARIARNFFDCQRTGIPPDLPPNPNVGFFVPYEAFG FT GVDNQPFSMGADVPNARAIPVVSPIINAMAGFGASMLSMKAMGLIEMGKLGAACHSLRM FT GKDALCEFVSTVLYYFGRLADKVTGRETEFFDELSILVQIDVQDWIKRSRGVLLESCYT FT SLNNMILSDVVNKLVTDGEQFASYIAGTPRRLSLDFGQLVSSIMKDLLDLQQRIVRHGV FT TVGRRKEPTWIYIFGPSHCGKSNMMDHLTSEVCRYFDLPYTYIARNGQDNFFTTGYKRQ FT TVLQIDDLSCVETVPPIEGELINLVSCSEYPLKMADLSDKSISFQSPFIISTSNQRTCL FT PTCGITHCEAFNNRRAVVIEMRRKPGVVFDPMDCHAAMQGRFLDKRDHTPLFGVRGQPE FT TYWKDVPEMTTILLNICAAHRQEQDILQEQHIRKHAVNDPLILASERFLKQESKKALCY FT MPRVEMEICGVQSQAAGCYYLCVDGKLYTCEDDGNLVETPCSNPSYAQWERNSSENFVG FT GIQALDALECRSILVSGFLRNLVQGQCCVLSIDEMSTTATMAQQRLFKALQLQERVYLR FT LIQKKISPILSEDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAAIMILCVALY FT YFIGAFIGVMGGALSMGAAMAGLKEVDMKAQYSSGAQEGRYRSRNIPIRQRYRYARGEL FT DEEVPLGGQLAVALYGSQGRFISALQYKGKSVMLTRHQMLMFSEKERVTCIYLATGESV FT VLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFELEGYVLRPDT FT TAFHYDHLKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCGMICLAQVGG FT KKKIVGLLVAGVDLQTWADILPNPCMAEMKSQIEYEFKLGTHTEGYTKLGYLTKDKTPH FT LPKKNSAVLVKPEYRIDSPVPIKEPSVISVEDPRCPRNVEGLPIDPIMKAFEKKFTTPM FT DLLEDDILESIAQEMVEEWQDCESEPLHDVPLEVAINGVPGTQIGDDDEFEDAVECFKM FT RTSPGYPYVLHKESGMKGKEAYFELAPDGTKVLKEGSLAAELYENIVQYSKSAIPELVV FT IECPKDELLKIEKVKQGACRLFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVGTKA FT YSHDWTHMYQRLVAKSDRAINCDYSGFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQ FT RYNMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSIFNEILMRYCFKVLVPGPQRN FT SFSTYVTLLVYGDDNLMSCTDKIATYFNGETIKATLKKKNVTITDGSDKTAPDIKWKAP FT GELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVENVDTLYEL FT ALNVQVALTELYLHGNKEEFQRVRNFYVKKMNILPAGYYTWADREAFHMSKQTGMEAYQ FT PAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCSVVAGPFYKPTPDQLLVSTTPLKQGEN FT GYWVPVETGMGIGSLPTISWVHRFMRPTQLVDAYGYKIWETLRSHIESGKCLVFRSEAP FT YVASNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQASLPGTFYLAN FT AESESLLQEHKTGTVIGLTTDKANLNGARDLIMQGQKLGKLPIMAATQAPNKFYVGLCC FT QKNFCPGHATSSDTIAKAFSQCWAMRCAPNSSSRKITFEPEWRKNKVLGIS" FT mat_peptide <1..617 FT /product="protease co-factor" FT mat_peptide 618..5954 FT /product="replicase module" FT misc_feature 618..2702 FT /note="NTPB; active site" FT misc_feature 2703..2753 FT /note="VPg; active site" FT misc_feature 2754..3413 FT /note="cysteine protease; active site" FT misc_feature 3414..5954 FT /note="RdRP; active site" FT 3'UTR 5958..6259 XX SQ Sequence 6259 BP; 1650 A; 1253 C; 1513 G; 1839 T; 4 other; gcgttcctat tgctggcaag cggccagatc tggtgtcgac catatatgcc tttattacgg 60 gagaggcgca aatttggctg tctgcaccac gtgtgtgctt attggctagg agaattattg 120 agttgagtga ttggtatccc catgagctcc ttgcagaaga attgaagaaa atctctgatg 180 aagagaactg taaggaggct gagagggaga tcaatctcaa atatttggaa atctctaaag 240 ccactgaaaa tatgcgtgcc aatggcttgt ttggcaagct taagggaaag gcccaggatt 300 tatggtctgg catagtcgat tttgcttccc atccgtttag gaagtacttg gctactgctg 360 cagattttgc tgaagggttt tcccacaaag tggtggatgc ggtgatgtcg cgggtgaatg 420 ctgctatcac ccaatttgct gcccagttgg acattgcaag aactctagtg gaccagctca 480 ttactcatgt aaaacgctgg tacactagtc tgtgcacaag ttttgatgac tcactcaaac 540 tccttggaaa atgggctggc tatgccctcg gacttattgt tggagttggg gtgtgccatc 600 tagttgaggt gatctgtgca cacatgggtt tcccattggg tggtgttatt acaggagtat 660 tcaccacagc atatatgggg tggttgtttg ttaaaacccc cgttggtagc gagcttgtta 720 tgagtttgcg catgcaggtt gcacgcattg cgcgaaattt ctttgactgc caacgtactg 780 gaattccacc agatctccca ccaaatccaa atgttggttt ctttgttccc tatgaagctt 840 ttggaggagt ggataaccaa cccttttcca tgggagcaga tgttccaaat gcacgagcaa 900 ttcccgttgt gagtcccatt attaatgcca tggctggttt tggagctagt atgctgagta 960 tgaaagccat gggtttaatt gaaatgggca aactgggtgc tgcttgtcat tcactgagaa 1020 tgggcaaaga tgccttatgt gaatttgtct ctactgtcct gtactacttt ggccgtttgg 1080 ctgataaggt tacaggcagg gaaactgaat tctttgatga attgtccatt ctcgtgcaga 1140 ttgacgtcca agactggatt aaacgatcta ggggggtcct gctagagtct tgctacactt 1200 cattgaacaa catgattcta tctgatgttg ttaacaagct cgttactgat ggcgagcagt 1260 ttgcaagtta catagcagga acacctaggc gattaagtct agattttggc caattggtga 1320 gttccatcat gaaagatctt ctcgatctcc agcagcgcat tgtgcgacat ggtgtgactg 1380 tgggccgccg taaggagcct acttggatat atatctttgg gccgtcgcac tgtggtaaat 1440 ctaatatgat ggaccacctc acttcagaag tttgtcgtta ttttgatttg ccatatactt 1500 acatagcccg taatggacaa gataatttct ttacaacggg ctataaacga cagactgtcc 1560 tccaaattga tgacctctct tgtgttgaaa ctgtcccacc cattgaagga gagctcatca 1620 atcttgtgtc atgctcggag taccccctta aaatggctga cttgtctgat aaatctattt 1680 ccttccagtc accatttatt atttccactt ccaaccagcg cacttgcttg cccacatgtg 1740 gtatcaccca ttgtgaagct ttcaataata ggcgagctgt ggttatagaa atgaggagga 1800 aaccgggggt tgtatttgat cctatggatt gccatgctgc catgcaagga cgattccttg 1860 ataaacgcga tcatacacct ctttttgggg tacgagggca gcccgagact tattggaagg 1920 atgtgccaga aatgacaaca attttgctca atatctgtgc tgcccacaga caggagcagg 1980 acatccttca ggagcaacac attcggaagc atgctgttaa tgatccactc attttagctt 2040 ccgagagatt tttgaaacag gagagcaaga aggctctctg ctatatgccc cgcgttgaga 2100 tggagatatg cggggtacaa agtcaggccg ctgggtgcta ttacctgtgt gtggatggaa 2160 aactctacac gtgcgaggat gatggcaacc tagttgaaac tccctgttca aacccaagct 2220 atgcgcaatg ggagaggaac tcctcggaaa attttgtagg ggggattcag gccttggatg 2280 ctttggagtg caggtccatt ttggtctctg gattcttgcg caaccttgtg caagggcaat 2340 gttgtgtgtt gtctattgat gagatgtcca caactgccac aatggcacaa cagagacttt 2400 ttaaagcact ccaattgcaa gagcgagtct atctgagact cattcagaag aaaatttcac 2460 ccatcctaag cgaagatgaa agtaatgtgt attcaaagaa cgcttggatg aggtgtttgg 2520 aatttgctgc agcctcaaga gattatctga aagaacatgg tttggaggtg ctattgttgc 2580 ttgcagcaat catgattctg tgtgttgccc tctactattt cattggtgct tttattggtg 2640 ttatgggggg tgcactttca atgggagcgg caatggctgg cctgaaagaa gttgacatga 2700 aggcccaata ttcgtctgga gctcaggaag gccgttaccg ctctcgcaat atccccatca 2760 ggcaacgata tcgctatgca cgtggcgaat tggacgaaga ggttccttta gggggccaac 2820 ttgctgttgc tttgtatggg tctcaaggtc gtttcatctc tgctttacaa tataaaggaa 2880 aatctgtgat gctcacaagg caccagatgt taatgttctc agagaaggaa cgagtaacat 2940 gtatatatct cgctactggt gaaagtgtcg ttctcacttt caatcgagat gatgtacagg 3000 aattccctaa ccatgaaaca tgtatgtggc aggctgctgg tatgcttcaa ttacctgcaa 3060 agtttaaaga ctgtttcttg gaaaaagggg aaactgaact agctccagcc tttgagctgg 3120 aggggtatgt gctgagacct gacacaaccg cgtttcatta tgatcatctt aaaacgtggg 3180 ccagagttca gtacgagccc tttgttgtgc gtggtagttt ggcaaaagag aaatacgtga 3240 atgaattgcc tacctctatc tggttccagt accagtcgcg caacaatgat tgtggaatga 3300 tctgcctggc gcaagttggt ggaaagaaga aaattgttgg acttcttgtt gctggtgtag 3360 atctgcaaac ttgggcagat attcttccaa acccctgtat ggctgagatg aaaagtcaaa 3420 ttgagtatga gtttaagctt ggaacgcata cagagggtta taccaaattg gggtatttaa 3480 caaaagataa aacaccccat ttgcccaaga agaatagtgc ggtgctcgtc aaaccagagt 3540 atcgtattga cagtcctgtg ccaatcaaag aaccttctgt tatttctgtt gaggatcctc 3600 gctgcccaag aaatgttgag ggcttgccaa tcgatcccat catgaaggcc tttgaaaaga 3660 aatttacgac tccaatggat ttgcttgaag acgacatttt ggagtctatc gcgcaggaga 3720 tggttgaaga gtggcaggat tgtgagagtg agccactcca cgatgtgccc ttggaggttg 3780 ctataaacgg tgtcccaggg actcaaattg gtgatgatga tgaatttgag gatgccgttg 3840 agtgttttaa aatgcggact tcccctggtt atccctatgt tttacataaa gaatcaggga 3900 tgaaggggaa ggaagcctat tttgagctag ctccagatgg cacgaaagtt ttgaaagagg 3960 gttcgcttgc tgcggaatta tatgaaaata ttgttcagta cagcaagagt gccattcctg 4020 agcttgtggt gattgagtgt ccaaaagacg agttactcaa gatagagaaa gtgaaacaag 4080 gggcttgtag acttttcgaa ataatgccct tgcattacaa cctctttctt agagagaaaa 4140 ctcttgcatt ttcgctgttt cagcagcgta atcgccacaa gttagcctgt caagttggga 4200 ccaaggcgta ttctcatgat tggacgcata tgtaccaacg ccttgttgcc aagtcagacc 4260 gcgccataaa ttgtgactat agcggttttg atgggctttt gaattctcag gtggtgagtt 4320 gcattgcaaa tatgataaat tctatgtacc actcacctga agaaactgtc gttagcaagc 4380 gccaacgata taatatgata aatgctctat ttggccgact tgctattact ggccaggaag 4440 tgatgcgcgt gcgggctgga ttaccgtctg gttttgcctt aacagtagtt ataaattcta 4500 tttttaatga aattttaatg cgctactgtt tcaaggtttt agttccaggc ccgcagcgta 4560 attccttttc cacctatgtc actttgttgg tgtatgggga tgacaacttg atgagttgca 4620 ccgataaaat tgctacatat ttcaatggtg aaactatcaa ggcaacccta aagaagaaaa 4680 atgtcactat tactgatggt agtgacaaaa ctgcacctga cattaagtgg aaggctcctg 4740 gtgaacttga ttttctgaaa cgccgtttct tgaagctgga aactggcgtg gtgcaggcac 4800 ctttggactt aactgctata ttttcatgct tgcattgggt aactccccac ccgcagaaga 4860 tgccgaaagg gggcgctcag cttcaggttg aaaatgtgga tacactctat gaattggctc 4920 taaatgtgca agttgcactg acagagttgt atctacatgg taataaagag gagttccagc 4980 gggttcgaaa tttttacgtg aagaaaatga acattcttcc tgctggatac tatacttggg 5040 cagacaggga agctttccac atgtcaaaac aaactggaat ggaagcttat cagcctgcca 5100 aagaaatcga tctggatgtg gggcaagaat ttgctcggtt tatgcataca tcggacattg 5160 gcaatcaagt tcattttaca cgccagtgct cggtagttgc aggacctttt tataaaccta 5220 cacctgatca acttctagtt tccacgactc ctctcaaaca aggggagaat ggttactggg 5280 tgccagttga aaccggcatg ggtataggta gtctacctac aatttcatgg gttcatcgtt 5340 ttatgcgtcc aacccaactt gtagatgcct atggttataa aatatgggaa acccttcgct 5400 ctcacattga aagtggtaaa tgtcttgttt ttaggagtga agccccatat gttgccagca 5460 atgcagccct gatggcattt ggccaagcag caaaattgct tgaaattaag acagcattaa 5520 atttgtatcg caatgttatt ccagaatcca cctatgggtt ggaacaatat tttgatgctg 5580 ccatacctca agcttctttg cctggaactt tctaccttgc aaatgctgaa tcagagtctc 5640 ttttgcaaga gcacaaaact ggtactgtta ttggcttgac tacagataaa gctaatctta 5700 atggtgctag agacctgata atgcagggcc agaagcttgg taaattgccc atcatggctg 5760 ctacgcaagc tcccaacaaa ttttacgttg gcttgtgttg tcaaaaaaat ttttgtcctg 5820 gtcatgctac ttcttctgac accattgcca aagccttttc acagtgttgg gctatgcgtt 5880 gtgcccccaa ttcttccagc cgaaagatta cttttgagcc tgaatggcgg aagaataaag 5940 ttttaggtat ttcttaaaga gaatatcccc ccagaccttg atggggtyct gtttcaaggt 6000 aaatttggtg tcgagataac caaattaaaa taactcgact tatccatctg aaygatgcgc 6060 gtttattgca cacgcggyga agctcaagtg catgtgcatt ttcttttggt ttgtttcttt 6120 ggtttgtgtt ttagytgttg tgtgctttta attctgtttt aagtggcgac aaatgaggtt 6180 cgtccttttc ctcattttgc tttgttggac acaaaaagat tttctatttc ttttgtatat 6240 tagaaaaccc aaaaaaccc 6259 //