ID JN127335; SV 2; linear; genomic RNA; STD; VRL; 7900 BP. XX AC JN127335; XX DT 02-DEC-2011 (Rel. 111, Created) DT 23-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Lily virus A isolate Bate1 polyprotein gene, partial cds. XX KW . XX OS Lily virus A OC Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus. XX RN [1] RP 1-7900 RX DOI; 10.1007/s00705-011-1166-x. RX PUBMED; 22075920. RA Wylie S.J., Luo H., Li H., Jones M.G.; RT "Multiple polyadenylated RNA viruses detected in pooled cultivated and wild RT plant samples"; RL Arch. Virol. 157(2):271-284(2012). XX RN [2] RP 1-7900 RA Wylie S.J.; RT ; RL Submitted (07-JUN-2011) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX RN [3] RC Sequence update by submitter RP 1-7900 RA Wylie S.J.; RT ; RL Submitted (19-OCT-2012) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; ba88a967c3b690308cf8ab1986bdf919. XX CC On Oct 19, 2012 this sequence version replaced gi:344922803. XX FH Key Location/Qualifiers FH FT source 1..7900 FT /organism="Lily virus A" FT /host="Lilium longiflorum" FT /isolate="Bate1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Nov-2010" FT /db_xref="taxon:1046301" FT CDS <1..7688 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:G9FIF9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011492" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR039560" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:G9FIF9" FT /protein_id="AEN25474.2" FT /translation="LDLMCDNQLDKNGNFVWGLRGYHAKRFLANYFEIVDTNHAYREHL FT VRKNPNGQRELATGKFIVSTNFEVFRKNMEGHPVESMPVTQSCISQRGERFIYACCCIT FT NEDGTPMESTFKMPTKNTLALGNTGDEKFVDLPPGTEERMYIAKEGYCYINIFFAMLIN FT VREQQAKAFTKMVRDRLVPELGTWPTMLDVATACHTLTVFFPDTLSAELPRILVDHTTK FT TMHVIDSYGSVSTGYHQLKANTVSQLILFASDTLKSEMKHYVVGGRPERLDVEFNALKL FT LMKGIYRPKLMRTLLEGRPYLMCMAMCSPGILMALHNSGSLELAAKHWIVRKREVSQIF FT TMLTMLAMKVSLAKVLADQLTLISESAGDFLKLMDCTFETHHSVNLVQTFLAHLEEKKN FT ADMVLLGSGFANMCATTHELLEKNYLAELDASWGALSWSEKLSQMWHLRKSRASTTIVL FT TPVSGADLKGRYDVSVKALSTRTFKSARKSVCNYIHSVKNRTYQFIGKQVCNSLTRTTR FT LFPELAKYVNILMAISVILKTSTMINAYSSEFVRLKHNELVCAEDARWNKLLHIYDMLE FT RTQGAKPTYDEFIEYLSKWEPALLEEFREVLDVSPRAAETVEFQAKPSGERNLERIMAF FT VTLIMMVVDAERSDCVYKVLNKLKSLIGTIHQEGVKFQSIDDIKDTLSEKNMTIDFELS FT GDDPTIDKMHGSTFEQWWSNQLERNNVIPHYRTEGFFMEFTRQNAASVATEIAHNAHHD FT ILVRGAVGSGKSTGLPFYLGKKGRVLMLEPTKPLAANVHKQLAGEPFCMKSITVMTSGY FT AFHYFANNPHQLKDHEFVLFDECHVNDSSAMAFRCLLAEHEYKGKVIKVSATPPGREVQ FT FPVEIVPVERLTFQQFVSIQGTGAVGDATSRGDNILVYVSSYSEVDLLSKGLIEKGHKV FT TKVDGRTMKVGSSEIETVGTAAKKHFIVATNIIENGVTLDVDVVVDFGLKVVAELDVDL FT RLTRYTKQSISFGERIQRLGRVGRHKPGVAVRIGHTEKGLQSIPVSVATEAAFLSFAYG FT LPVMTHNVSTNILTNCTVLQARTMMLFELSPFYTVHFVRYDGSIHPAVHQLLAPYKLRD FT SEVVLNKVAIPNRGVNQWATAKEYAFQGFRMGIDDDVRLPFHANDIPERLHECMWRAVQ FT KHKGDAGFGRISTTSACKIAYTLQTDVASIQRTICILDRLIENELRKQEYYKNITSSSC FT TSSSFSLLTITNAIRARYMKDHTIENISVLQAAKAQILEFRNVEYNLENIERMTEYGAL FT ECVNFQSLEDMSRHLRLKGHWNKSVLTHDVMICGAVLVGGFWMLGSHYASKCSEVVRFQ FT AKNKRQRQRLRFREARDNKHAYEIHGEDADLQHYFGAAYTAKGKKKGNTVGMGAKTRKF FT INMYNFDPTEYSFARYVDPLTGFTLDENSITNVDLVQDHFGKIRRKLMEDGELEKEAVA FT SKARLEVYFVKNLASQILRIDMTPHNPLRVCDRRETVAGFPEREWELRQSGAPVMMAPN FT LLPASNPYEEEVDFENRSTFHGLRDYNPIATCVCRLENNSDGYTSSIHGLGYGSYIITN FT QHLFNRNNGTLTIESHHGVFHIPNTTQLKLFPIPGRDIILVQLPKDFPPFAKRLKFREP FT TATEKVCLVGTLFQDKTTTSTVSEASIITRKDGSHFYRHWISTKDGQCGLPAVSTKDGC FT VLGIHSLTSLVNDSNFFISFPEDFEKEYLNKASELEWVKHWKLNVDKICWGSLSLESNK FT PSNLFKLSKDIQSLDTEIVGLQSREDKWLFDKLQGNLKAVARTRNQLVTKHVVKGKCML FT FETYLNTNPQARDYFQPMMGYYQKSRLNKEAYIKDLFKYASPIVVGEVNCEHFEEAYED FT VVSLFERANFGTCNYITDETEIFAALNMKAAVGALYSGKKREYFANYTDKDKENIVRDS FT CQRLFLAQMGVWNGSLKAELRAKEKVDLNKTRTFTAAPVDTLLGGKVCVDDFNNRFYSL FT NIQCPWSVGMTKFYKGWDEMLRKLPDGWVYCDADGSQFDSSLSPYLINSVLNLRLHFME FT SWDLGEQMLKNLYTEIIYTPIATPDGTIIKKFKGNNSGQPSTVVDNTIMVIMAIHYSYK FT NLKITTPLDDFCKYFVNGDDLLLAVRPDFEYILDHLSTTFKQLGLNYDFTSRTHDRSEL FT WFMSHQGILQDGLYIPKLEPERIVSILEWDRALEPVHRLEAICASMIEAWGNQPLLHEI FT RKFYSWVLEQAPYSALAVEGKAPYLSEMALRALYTGRDTTQGELEKYLSQLELLEELEG FT PEEVIFQANETLNAGATSTSRTQPATQAGAGSSQLVTRDRDVDAGTVGTFQVPRIQKLA FT ARLAVPKISGRILINLDHLINYNPEQVDISNTRASQHQFASWYEGVKLDYGLEDAGMAI FT ILNGFMVWCIENGTSPNINGMWVIMDGADQVEYPLRPMIEHAKPTLRQIMAHFSPLAEA FT YIEKQNLERPYMPRYGLQRNLTDFGLARYAFDFYEMNSKTPQRAREAHIQMKAAALRGA FT RTKLFGLDGKVTTQDEDTERHTTDDVNAKMHSLLGVNM" FT mat_peptide <1..800 FT /product="HC-Pro" FT mat_peptide 804..1862 FT /product="P3" FT mat_peptide 1863..2021 FT /product="6K1" FT mat_peptide 2022..3872 FT /product="CI" FT mat_peptide 3873..4031 FT /product="6K2" FT mat_peptide 4032..4607 FT /product="NIa-VPg" FT mat_peptide 4608..5336 FT /product="NIa-Pro" FT mat_peptide 5337..6884 FT /product="NIb" FT mat_peptide 6885..7685 FT /product="CP" FT 3'UTR 7689..7900 XX SQ Sequence 7900 BP; 2265 A; 1766 C; 2003 G; 1866 T; 0 other; atctggatct catgtgcgac aaccagttgg ataagaacgg gaacttcgtg tggggcctga 60 gagggtacca tgctaagcgt ttcttagcca actacttcga gatagtagac acaaatcatg 120 cataccgcga gcacttagta cgcaaaaacc cgaacgggca gcgcgaactc gcaacaggca 180 agtttattgt gtccactaac tttgaagtgt ttcgaaagaa catggaaggg catccagttg 240 agagtatgcc agtgacacag agttgcatca gccagcgtgg agaacgattc atatacgcat 300 gctgctgcat cacaaatgag gatggcacac caatggagtc gacattcaag atgccgacaa 360 agaacacact ggcacttggg aacacagggg atgagaaatt tgttgatctt cccccaggga 420 ccgaggaacg catgtacatt gcgaaggaag gatattgcta cattaacata ttctttgcga 480 tgttgataaa cgtgcgtgaa caacaagcaa aggcattcac gaaaatggtc cgcgatcgtc 540 tcgtccctga gctagggacg tggcccacaa tgttggatgt ggcaactgca tgccacacac 600 tcacagtttt cttcccagac acgctaagcg ccgagctacc gcgaatctta gtggatcaca 660 ccacaaagac aatgcacgtc attgactcat atgggtcggt tagcacaggg tatcaccagc 720 tgaaggcaaa caccgtcagc caactaatcc tgtttgctag cgacactctg aaatcagaga 780 tgaagcatta cgtagttggg ggccgtccag agcgattgga tgtagagttt aacgcattga 840 agctactgat gaaaggaatc tatagaccaa aattgatgcg gacattgcta gagggaaggc 900 catatctgat gtgcatggcg atgtgctcac ctggaattct gatggctttg cataacagcg 960 ggtcactgga gttagccgcc aagcactgga ttgttcgaaa gcgtgaagtc tcgcagatat 1020 tcacaatgct aaccatgcta gccatgaagg tatccctggc aaaggtctta gccgatcagc 1080 tcaccctgat tagcgaaagc gctggggact ttttgaagct catggactgc acatttgaga 1140 cacaccattc ggtcaacctc gtgcagactt ttctggcaca tctggaggag aagaagaacg 1200 ccgacatggt tctgcttggt tcaggattcg caaacatgtg tgcaacaaca catgagctgc 1260 ttgaaaaaaa ttatctagca gaactggatg cttcttgggg cgcgctaagc tggtcggaaa 1320 aattatcaca aatgtggcac ttgcggaaat cgcgggcgtc tactacaatt gttttaaccc 1380 cggtaagcgg cgcagatttg aaaggcagat acgacgtgtc tgtaaaagcg ctttctacgc 1440 ggacatttaa atctgcgcgg aagagcgttt gtaattatat acatagcgtg aaaaatcgca 1500 catatcagtt tataggtaag caagtatgca actcattaac gagaacaact cgactgttcc 1560 cagagttagc taaatatgta aatatattaa tggctatcag cgtcatacta aagacgtcta 1620 cgatgataaa cgcatattct agcgagtttg tgcgtcttaa gcataatgag ctagtgtgtg 1680 cagaggatgc acgctggaat aaattgttac atatatatga tatgcttgag agaactcaag 1740 gggctaagcc cacttatgat gagttcatag aatatttatc aaaatgggaa cctgccctgc 1800 tggaagagtt tcgtgaggtg ctagatgtat ctccacgagc tgcggaaacg gtcgaattcc 1860 aagcgaagcc aagtggtgag cggaatctcg agcggataat ggccttcgtg acacttatca 1920 tgatggtcgt tgatgcagag cgtagtgatt gcgtctacaa agtactgaat aaactcaaaa 1980 gtttgatagg caccattcat caagagggag tcaagtttca gagcattgac gacatcaagg 2040 acaccctctc ggagaaaaac atgaccatcg actttgaact gtcaggtgat gatccaacaa 2100 ttgacaaaat gcacggatcg acatttgaac aatggtggtc aaatcagctg gagcgaaata 2160 atgtgattcc acactatcga acagaaggat ttttcatgga attcacacga caaaacgcag 2220 cttcagttgc cacagagatt gcacacaatg cacaccatga catactggtt agaggtgcag 2280 ttggttcagg caagtcgaca gggctcccgt tctacctcgg gaagaaaggc cgtgtattga 2340 tgctggagcc tacgaagcca ctagcagcga atgtgcataa gcagttagct ggcgagcctt 2400 tctgcatgaa gtcaatcaca gtgatgacta gtggatatgc tttccactac tttgcgaaca 2460 acccacatca actgaaggat catgaatttg tgctgttcga cgagtgccat gtaaatgaca 2520 gctcagctat ggcgtttcgg tgcctactcg cagagcatga atacaaaggc aaagtcatca 2580 aggtttctgc aactccacca ggccgcgagg tgcagttccc agttgagatt gtccctgttg 2640 agaggctcac tttccagcaa tttgtgtcga ttcaaggcac cggcgctgtt ggtgatgcca 2700 catcgcgagg cgataacata ctggtatatg tgtcgagtta cagtgaggtc gatttgctca 2760 gcaaagggtt aatcgagaaa ggacacaaag tcacgaaggt tgacgggcgc accatgaaag 2820 tggggagctc cgagatcgag acggttggca ctgcagcgaa gaaacatttc atcgtagcca 2880 cgaacatcat cgaaaacggg gtgacactcg atgtcgatgt cgtggttgac tttggcctga 2940 aagtagttgc agagcttgac gtcgatttgc gtctcactcg atacacaaag caatcgatat 3000 catttggtga gcggatacag aggcttggga gagttgggcg acacaagcca ggagtggcgg 3060 ttcgcattgg ccatacagag aaagggctcc aaagcattcc agtttccgtc gcaactgaag 3120 ccgcctttct gagttttgca tacggtctac cggttatgac gcacaacgtt tcaaccaaca 3180 ttctcacaaa ttgcacagtg cttcaggcac gaacaatgat gctctttgag ctgagtccgt 3240 tctatactgt gcattttgta agatatgatg gatccatcca cccagcagta caccaactgt 3300 tggcgccata caagttgcga gactctgaag tagtcctgaa caaggtagct attccaaatc 3360 gtggtgtcaa tcaatgggca accgctaagg agtacgcctt ccaaggattc cggatgggga 3420 tcgacgacga tgtccgctta ccattccacg ccaatgacat accggaacga ctacatgaat 3480 gcatgtggag agctgtccaa aagcacaagg gcgacgccgg ctttggtcgg attagcacaa 3540 cgagtgcctg caaaatagcc tacacactgc agacagacgt tgcatcaatt cagcgcacaa 3600 tatgcatact tgatcgcttg attgagaacg aactgcggaa gcaagagtac tacaagaaca 3660 tcacgagttc ttcctgcaca agttcaagtt tctcactact gaccatcacg aatgccatac 3720 gagctcgata catgaaagat cacacaatcg agaatattag tgtgctgcaa gctgcgaagg 3780 ctcaaatact ggagtttcgg aacgtggagt acaatcttga gaacatcgag cgaatgaccg 3840 agtatggagc actcgaatgc gtcaactttc agtccttgga ggacatgtca cgccacctac 3900 gcttgaaagg tcactggaac aagagcgtgc tcacccacga cgtgatgatt tgtggtgctg 3960 tactcgtggg cggattttgg atgcttggct cacactatgc aagcaagtgt tctgaggtgg 4020 tgcgatttca ggcaaagaat aagcggcaac gacagcgatt gcgatttaga gaagcccgcg 4080 ataacaagca cgcctatgag attcacggag aggatgctga tttgcaacac tactttggtg 4140 ctgcttacac agcaaagggg aagaagaaag gcaacacagt tggcatgggg gcgaaaacgc 4200 gcaaatttat taacatgtac aactttgacc cgacggagta ctcgttcgct agatacgttg 4260 accctctcac gggattcaca ctcgacgaga actccataac taacgttgac ctagtccaag 4320 accacttcgg aaagattcgg cgcaagctaa tggaagatgg agagctcgag aaagaggcgg 4380 ttgcgtcaaa agctcggttg gaggtctatt tcgtgaagaa tttggctagc cagattctta 4440 ggatcgacat gacaccccac aatccgctac gcgtttgcga ccgaagagag acagttgctg 4500 ggtttcctga gagggaatgg gagttgcgac agtctggggc acccgtaatg atggcaccga 4560 acttgctccc cgcctcaaac ccatatgaag aggaggttga ctttgagaat agatccacat 4620 ttcacggttt gagggactac aaccctatag ccacgtgtgt ctgtcgatta gaaaacaact 4680 cggatgggta cacttcgagc attcacggtt tgggttatgg atcatatata ataactaacc 4740 aacacctatt taaccgcaat aacgggacat taactataga gtcccaccac ggagtcttcc 4800 acatcccgaa caccacccag ctgaaactat tccctatacc agggagagac ataatactag 4860 ttcagctacc gaaggatttt cccccattcg caaaacgcct caaattccgt gagcccacag 4920 ccacggaaaa ggtgtgccta gtgggaaccc tcttccagga caagaccacg acgagtacag 4980 tgtcggaagc tagcatcatc acacgcaagg atggctcaca cttttacagg cattggatca 5040 gtaccaagga tgggcagtgt ggtttacccg ctgtctctac caaggatgga tgtgtgcttg 5100 gaattcacag cctcacaagc ctagtgaacg acagtaactt cttcatctca tttcccgaag 5160 attttgagaa ggagtatctg aacaaggcga gtgagctcga gtgggtcaaa cactggaaac 5220 tcaatgttga caaaatttgc tggggatccc tttcattgga gtccaacaag ccgtcaaatt 5280 tgttcaaatt gagtaaggac attcagtcac tcgacacaga gattgttggc cttcagagca 5340 gggaggacaa atggctgttc gataagttgc aaggaaatct gaaagcagtt gcacgtaccc 5400 gaaaccagct cgttacaaag catgtggtga aggggaagtg tatgctcttt gagacgtatc 5460 tgaatacgaa tccgcaggca cgcgattact tccagccgat gatgggctat taccagaaga 5520 gtagactgaa caaggaggcg tacatcaaag atctatttaa atacgccagt cctattgtgg 5580 ttggggaagt caactgcgag cattttgaag aagcgtacga ggacgtagtg tctctgttcg 5640 agcgggccaa ttttggcacg tgtaactata taacagatga gacggaaatc ttcgcagcgc 5700 tgaacatgaa ggctgcagtc ggagcgcttt acagtgggaa gaagcgggaa tatttcgcta 5760 attatactga caaagataaa gaaaatatcg tacgtgatag ctgccagcgg ctgtttctag 5820 cgcagatggg cgtgtggaat ggctcgctaa aagcagagtt gcgtgcgaaa gaaaaagttg 5880 atttgaataa aacacgaacc ttcacagccg caccggttga tactctgttg ggcggaaagg 5940 tttgtgtaga tgactttaat aaccggtttt attcgctaaa tatccagtgt ccttggagtg 6000 tcggaatgac caagttctat aagggctggg acgagatgct acgaaagctg cccgatgggt 6060 gggtgtactg cgacgccgat ggctcgcaat tcgatagttc tctgtcgcca tacctcatca 6120 attctgtgtt aaacttgcga ctacacttca tggagtcctg ggatttgggc gaacaaatgc 6180 tgaagaactt atatactgag ataatatata ccccgattgc gacgccagac gggactataa 6240 taaagaaatt taaaggaaat aatagtgggc aaccatcaac cgtggtggat aataccatta 6300 tggtgattat ggccatccat tattcctata aaaacctaaa aataacaacg ccgcttgacg 6360 acttttgtaa atactttgtc aacggcgatg atttactgtt ggcagtgcgt ccagactttg 6420 agtacatatt ggaccacttg tcaacaacat tcaagcagct tggcttaaac tatgacttca 6480 cgtctcgcac ccatgaccgt agcgagcttt ggttcatgtc gcaccaaggg attttgcagg 6540 atgggctcta catacccaaa ctagagccag aacgcatcgt ttctatcctt gagtgggaca 6600 gagctttgga acccgtccac aggctggaag caatttgtgc atctatgatt gaggcatggg 6660 gcaatcagcc tctgttgcat gagattcgca agttttacag ctgggttctc gagcaagcgc 6720 cgtacagtgc tctagcggtt gagggaaaag ctccatattt gtctgaaatg gcattacgtg 6780 ctctttacac gggcagggat accacgcaag gggaattgga gaaatacctt tcacagctgg 6840 agttactgga agagcttgaa ggaccagagg aagttatttt tcaagccaat gagactctga 6900 acgcgggagc tacaagcact tcgcgaacac aaccagcaac gcaagcagga gctggctcta 6960 gtcagctagt aacgcgggac cgtgatgtgg acgcaggtac agttgggaca tttcaggttc 7020 cccgcattca gaaactcgca gctcggcttg ctgtacctaa gatcagtggt cgtatattga 7080 taaacctaga ccacctaata aactacaacc cggagcaagt tgatatatca aacacgcgtg 7140 ctagccaaca tcagttcgca tcatggtatg aaggcgtcaa gctggactat ggtcttgagg 7200 atgctggcat ggcaatcatt ttgaacgggt tcatggtgtg gtgcatagag aatggcacct 7260 caccaaacat aaatggcatg tgggtcatca tggatggagc cgatcaagtc gaatatccat 7320 tgcgtccaat gatagaacac gcgaaaccca ctctgcgcca gatcatggcg cacttttcac 7380 ctctcgctga agcttacatt gaaaagcaga atttggagag accgtatatg ccaagatacg 7440 gacttcagcg aaacctcacg gacttcggac tagcacgata tgcattcgac ttctatgaaa 7500 tgaattccaa aacgccgcaa cgcgctaggg aagctcatat tcagatgaag gcagccgcac 7560 tacgtggggc gcgcacgaag ctattcgggc tggacgggaa agtgaccaca caggatgagg 7620 acacggagag gcacactaca gacgatgtga atgcaaagat gcactccctt ttgggagtta 7680 acatgtagtg tgattcggaa ggagtattac tattagttac ttgagctatt atatatagtt 7740 tacttttctc gtagaatcct attctatagc ccaacttttt gtgttttagt gtggatctcc 7800 acgatagcac attgtagctg ggaatcgaac ccttaggccg ggcctgtctg cagagaggtt 7860 tacctcgcgt ctttcagttc tagcttcttg ggcaagagac 7900 //