ID JN126045; SV 1; linear; genomic RNA; STD; VRL; 8041 BP. XX AC JN126045; XX DT 22-AUG-2011 (Rel. 109, Created) DT 22-AUG-2011 (Rel. 109, Last updated, Version 1) XX DE Cucurbit chlorotic yellows virus isolate Erlun segment RNA2, complete DE sequence. XX KW . XX OS Cucurbit chlorotic yellows virus OC Viruses; Riboviria; Closteroviridae; Crinivirus; unclassified Crinivirus. XX RN [1] RP 1-8041 RA Deng T.-C., Tsai C.-H., Liao J.-Y., Lin Y.-T.; RT "Purification and polyclonal antiserum production of Cucurbit chlorotic RT yellows virus"; RL Unpublished. XX RN [2] RP 1-8041 RA Deng T.-C., Tsai C.-H., Liao J.-Y., Lin Y.-T.; RT ; RL Submitted (15-JUN-2011) to the INSDC. RL Plant Pathology, Taiwan Agricultural Research Institute, No. 189, RL Jhongjheng Rd., Wufong, Taichung 41301, Taiwan XX DR MD5; e3f962fee858fb478ee91fdff5de1366. XX FH Key Location/Qualifiers FH FT source 1..8041 FT /organism="Cucurbit chlorotic yellows virus" FT /segment="RNA2" FT /host="muskmelon" FT /isolate="Erlun" FT /mol_type="genomic RNA" FT /country="Taiwan:Yunlin, Erlun" FT /db_xref="taxon:558690" FT gene 1035..1166 FT /gene="p4.9" FT CDS 1035..1166 FT /codon_start=1 FT /gene="p4.9" FT /product="hypothetical 4.9-kDa protein" FT /db_xref="UniProtKB/TrEMBL:D3KY90" FT /protein_id="AEM45629.1" FT /translation="MPKAFKFDRYLISLQPMSGSASSKNQHVSNNIYFSFCSIYLLS" FT gene 1207..2877 FT /gene="Hsp70h" FT CDS 1207..2877 FT /codon_start=1 FT /gene="Hsp70h" FT /product="heat shock 70-kDa protein-like protein" FT /db_xref="GOA:D3KY91" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:D3KY91" FT /protein_id="AEM45630.1" FT /translation="MSAKAGLDFGTTFSTISAYVNGVMRVLKLNDTEFIPTCLAITITG FT DVVVGGPAQVLEEDEVANCYFYDLKRWVGVDKINFDEIKEKIKPLYVAELDGNDVKLTG FT IDRGFSCTYTVKQLILLYVETLVRLFSKVENLNIISLNVSVPADYKCKQRMFMKSVCDS FT LGFSLRRIINEPSAAAIYFVSKYAHFDSFLMYDLGGGTYDSSLIVKDGKYVTVADTEGD FT SFLGGRDIDRAISNYIKNKYNLKFPLSADFLASIKEEANSKGRDSFNVVDEKGRLITVK FT MSREELDSCIEPFSKKSINIIKNMVVRNQIRSGALFLVGGSSLLKKIQSDVAQFAKSHN FT LECIIDPDLRSAVSFGCSMSHAQEDTGNMVYIDCNSHPLMDIAFFGNPKVLVRKPMAIP FT YTYRKEEFFKSHYSTILNVYEGSDPFVLYNDWLISARMQSSLYCNIGETLEYLYKYSVD FT GILELSVKNKTTGKETVLPNTFTLTESIKKLNLNLTQLSNVDETATLIAILSHFKPDLK FT HLLTYVKTPTIFETKLNNISSAKELYKNLVDINEKFSNT" FT gene 2878..3042 FT /gene="p6" FT CDS 2878..3042 FT /codon_start=1 FT /gene="p6" FT /product="hypothetical 6-kDa protein" FT /db_xref="UniProtKB/TrEMBL:D3KY92" FT /protein_id="AEM45631.1" FT /translation="MGLKIVLYYFNCGFSIYYCSDNRLFEGDFETIYTEDFKDLLEVVT FT NYPFVKLQW" FT gene 3036..4589 FT /gene="p59" FT CDS 3036..4589 FT /codon_start=1 FT /gene="p59" FT /product="hypothetical 59-kDa protein" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:D3KY93" FT /protein_id="AEM45632.1" FT /translation="MVSLKESEKLKHCFQLLFKRTDVSPQLDALVEYMRNNYRTENSNV FT YKSISRKSPMSFDSQFRQVAGDIHFVEHDNKSIVKLIYIYFNKVEPNLLKKLAYQPGSL FT FVTDEWLDYLSEWEKYLDKSMNDYLNDNKSLGCLYTEDDIARHYPGSSRSRLITLYRVC FT NSQGRLIPIDEFLSGEIKGFDIPTASDAVLIGEGISNNPLFSECVQAFREYVRLMNSKA FT GQAKINVNKRFFDVYFESMSQNPEMIRVKENPLVLAKFMKEFDSLTVNSRGFADNINAI FT KTLDKDFQRFIKDVFMLNNSLDEDSLFVKMPKDSVIDILGQPISLSNYLRTSDIPPPLS FT NSSSLSDVVDTVVSEGFYSFFKKFGVTDKQLLLDALLFVFGKLTTNKNFWEKPNNVKFK FT VDSKVISFVSSDLTSHIKNCVKRFDPTYDCNNIIRQWANLRGNRAVRLFRLTGFRPGLF FT STIPGIVPWMRFDFFKLLTVQNLSHDEETSFRTLRLMTEHKSNKSSSDDCEFYKWISRS FT " FT gene 4571..4810 FT /gene="p9" FT CDS 4571..4810 FT /codon_start=1 FT /gene="p9" FT /product="hypothetical 9-kDa protein" FT /db_xref="UniProtKB/TrEMBL:D3KY94" FT /protein_id="AEM45633.1" FT /translation="MDLSKLIEKYGEDKVEKYYSLYRNAKFSAGGTTLCVLRLINEKLM FT KFTEDNKPSGFNDVDVSEFLECVYWFSLLPKFFN" FT gene 4941..5693 FT /gene="cp" FT CDS 4941..5693 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:D3KY95" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:D3KY95" FT /protein_id="AEM45634.1" FT /translation="MEKTDNKQNDDLNKITEDGAEVIERYEKRESEGSKSSSNYEVRDL FT ITPEHMNPEKLGDIVVYSNRADVMTEEDELKFEQCMRDFAKKFVFKKSDSEPSPDEFMA FT FYVSLVQSWLTQSTSMKNARQRNLSNTLSVKNQKYTWRTAEFIDFVKGNLPHVPNPFRQ FT YARKHESDIEILKATGKVMSDHHLQAKHGVLSQYWALPADYVNGSLINISDDDLAANLL FT MKCQALKGTSQERKFYNVSQLAPGGCSK" FT gene 5693..7117 FT /gene="cpm" FT CDS 5693..7117 FT /codon_start=1 FT /gene="cpm" FT /product="minor coat protein" FT /db_xref="GOA:E3UTM4" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:E3UTM4" FT /protein_id="AEM45635.1" FT /translation="MESKDFYEEGDGQVITRADKYMWCQSHTMSILQVSDMSFSFLNTQ FT DVTNSKFLFQIKIGVPEGNLIYEYKFNNTHSHSFRQSGGRTWSNAFDNLGSPRILKLGV FT MNDITFKRESRDWIMSVNGFRYVKIKGIYNPNDMIISLTYPANELQLASNKVYQSDFVR FT FKSVFSEIKLNGEDFQPKTIRCYVLNLNSNKVTNLKISKPLEFLNVKSLADLNIEELNK FT DPPLPEPVKPDPPEEKVKHPDPSPEPLKPVPPVPKPSDNNDKPGESDKIKPNPTPSPVD FT IPIKPGNVSDINFSVKSNIKGIERHRLFNLEIEDIFKKCVDYYVKLGFGEDQAELIIFQ FT MGVSFCTSKNSIGDLTSHLIWEDSKGKLIRLRKSDHVKYMNSLTKFSCNVERLVLRYYS FT EKILNLLKNGSLVPASHHAKRRGVKQEFAYLVTDFFDYGKLKLSDQELQVLNSDMQYVL FT LKNKHRRSIVNVNQLY" FT gene 7179..7820 FT /gene="p26" FT CDS 7179..7820 FT /codon_start=1 FT /gene="p26" FT /product="hypothetical 26-kDa protein" FT /db_xref="UniProtKB/TrEMBL:G3K522" FT /protein_id="AEM45636.1" FT /translation="MSLNDVIAKNFNTIVNIIQSHALFDKIHLENYRELCNVLHVMINE FT NNNDINIYSENNRTLGSFRDAGLDINNISARRNKLFPTLTPWQIRDVLQQLESVLWFVT FT DLKTGLMDDFKINNLFSIYKINNVGDLINSVHSYLNSHYNFRDNINAEFSLMIRDDDCV FT DSVIKSFKRKKFLNEKSRQKMKTLLANCLVYEITFNFGNLGLYMNPLKNF" XX SQ Sequence 8041 BP; 2638 A; 1290 C; 1585 G; 2528 T; 0 other; ggaaattatc cacggtttcc ccgaggtaat gggaagtccc aaccccctcg aaacagcccc 60 ctcgctttct cagcgtggaa actgagagag gagaatggag tattgtgtgg gcgcactagt 120 tgtatacaca catgccattc ttcgatctta gtaactgaga tcgcctatct tgacaacact 180 cagttgtcaa catgtccaaa caaaacaaaa acaagaaaca aaataacaca ataaacgcct 240 gccactaaac aaggctttag tcaacgatcg tacaaagtaa ctggtgtacg gttgccgcgt 300 ttgttagtca ccaccgcctc tggctaaggg tcggtcacgg tgcaagtcgt ctgacgactg 360 gtgaagaatc ccagtcgtct actacgtacc tgcattgttg tcccatatcc ccccccccag 420 agatccggtt tgtttatccg tttgtcattt tccttatgtt gatgaaataa aaatcattaa 480 agtgttatac actttttata tgtaatttaa ttttgtcgtt tctaagaaca tgatcaagtc 540 gtgagtcata ttttacttta aacctatcgc ctgtcttcaa gacagtcgtt attaatccga 600 caagttggta tcggaatgtt gattcacatt tgctattcgt tcttggaacg gttgtatttg 660 tcgttttagt gttttatcat cttattgttg tgtttttgtt tttgagtttt tgtttccagt 720 gcagtttgag ttagtgttct aaaagcaagt tctgtgagag ttgacgaaaa ctataaacct 780 accgcctttc tttcggaaag tcgttatcaa tccgacaagt tggtatcgga tggttaactt 840 acacaatact ttgattttta ttactgtcga atttgtttaa acgcatttaa tttcttgatt 900 gtgtgtatct cttgtggaac tcaacaaaat agattagcta ttgagtctca ttattttagt 960 ttatagatac gttattattt ttctgttgct ttcttgagca ttagtttgtt gtttgtaatt 1020 aaagatcgtt catcatgcca aaagctttca aatttgatcg atatttaatt tcactgcaac 1080 cgatgtcagg ttcagcgtca tcgaaaaatc aacacgtgtc taataatata tatttttcat 1140 tttgttcaat ctatctgttg tcgtaatatt cttgtaaatt aatttgtgtt tcttattccg 1200 aataacatgt ctgctaaggc tggtttggat tttggtacca ctttttcgac cattagtgcg 1260 tatgtcaatg gtgttatgag agttttaaaa ctgaacgaca ctgagttcat tcctacctgt 1320 ttagccataa ccattacggg agatgtggtt gttggtggtc cagcccaagt tcttgaggaa 1380 gacgaggtgg ctaactgtta tttttatgat ttgaagagat gggttggtgt agataaaatc 1440 aattttgatg aaataaaaga aaaaataaaa ccattatatg tggcggagtt agatggtaat 1500 gatgtcaaat tgactggaat tgatcgtggt ttctcatgta cgtacacagt taaacagctg 1560 attttattgt acgttgagac tctggtcaga ctattttcaa aagttgaaaa tttgaacata 1620 attagtctaa atgtttcagt accagcagat tataagtgca aacaaaggat gtttatgaaa 1680 tcggtgtgtg atagtttggg tttttcactg cgaaggatta tcaacgaacc gtcagcagca 1740 gctatttatt ttgtatcaaa atatgctcat ttcgattctt tcctcatgta cgatcttggc 1800 ggtggtactt acgattcatc tttaattgtt aaggatggga aatatgtcac tgtcgcagac 1860 actgagggag attcgttctt aggtggtaga gatatagaca gagcaatttc aaattatata 1920 aaaaataaat acaatctcaa atttccgttg tcagccgatt tcctagcttc aatcaaggaa 1980 gaggccaatt ctaaaggaag ggattccttt aatgtggtgg atgaaaaggg gcgtttgata 2040 actgtgaaaa tgtctagaga agagttggac tcgtgcattg agccgttttc gaagaagagc 2100 atcaacatca taaaaaatat ggttgtgaga aaccaaatta ggtctggtgc tttatttctt 2160 gtgggtggtt cttcactgtt aaagaaaatt caaagcgatg tagcacaatt tgcgaagagt 2220 cacaatttag agtgcatcat tgatccagac cttcgatcag cagtgtcttt tggttgttct 2280 atgtcacacg ctcaagagga cacaggtaat atggtttaca tcgattgtaa ttctcatccg 2340 ttgatggaca tagcattttt tggtaatcct aaagtcttgg tccgtaaacc aatggcgata 2400 ccatacacat ataggaaaga ggagtttttc aaatctcact atagcaccat tttgaatgta 2460 tatgaagggt ctgatccatt tgtattgtat aatgattggt tgataagtgc acgtatgcag 2520 tccagtctgt attgcaatat aggtgaaact ttagagtact tgtacaaata tagtgtggat 2580 ggtatattag agttatcagt aaaaaataag accactggca aggagacggt tttacctaat 2640 acttttactt tgactgaaag tattaagaaa ttgaatctca atttgactca gttatctaat 2700 gttgatgaaa cagctacgtt gatagcgatt ttgagtcact ttaaacccga tcttaagcat 2760 ttactaactt acgtgaaaac acccacgatt tttgagacga aattgaataa tatttcatct 2820 gcaaaagaac tatataaaaa tcttgtagat ataaatgaaa aatttagcaa cacatgaatg 2880 ggattaaaga tagtacttta ttattttaat tgtggtttct caatatacta ttgttcagat 2940 aacaggttgt ttgaaggtga ctttgaaacc atatacacag aggatttcaa agatttactg 3000 gaggtcgtga ccaattatcc atttgttaaa ttacaatggt gagtttgaag gaaagtgaaa 3060 aattaaaaca ttgttttcaa cttcttttca aacgtacaga tgtgtctcca caactagacg 3120 ctttagttga atacatgaga aataattata ggacagagaa ttccaacgta tataaatcaa 3180 tcagtagaaa gtcaccaatg tcatttgact cccaatttag gcaagtggct ggtgacattc 3240 actttgttga acatgacaat aagagtatag taaaactcat atatatctac tttaataagg 3300 tggaaccgaa cctgttaaag aaattggctt atcaaccggg ttcattattc gtgacagatg 3360 aatggctaga ttatttatct gaatgggaaa aatatctaga caagtccatg aacgactacc 3420 tcaatgacaa caaatcctta gggtgtctgt acacagaaga tgacattgca cgacattacc 3480 ctggatccag tagatctaga ctgataacac tttacagggt gtgtaattcc cagggtcgtt 3540 taatacccat agatgagttt ctatcaggag aaattaaagg tttcgacatt cccacagcat 3600 cagatgcagt attgataggt gagggtatat caaacaatcc attattttct gaatgtgttc 3660 aagctttcag agagtatgtc aggttaatga attctaaagc tggtcaagca aaaatcaatg 3720 tgaataagag attttttgac gtttacttcg aatcaatgtc acagaatcct gagatgatca 3780 gagtaaaaga gaaccccctt gttttggcta agtttatgaa agaattcgat tccctcacag 3840 tgaatagtcg aggttttgcc gacaacatta acgccattaa aactttggac aaggatttcc 3900 aaagattcat aaaggatgtg tttatgttga acaatagtct ggatgaagat tctttatttg 3960 tgaagatgcc aaaagattca gtaatcgata tcctaggtca accaatttct ttatcgaact 4020 atcttaggac cagtgatata ccaccaccac tgagtaactc atcgtcactt tcagatgttg 4080 tcgataccgt agtctcagaa ggattttact cgttttttaa gaaatttggt gttacagaca 4140 aacaactact attggacgcg ttattgtttg tattcggtaa gctcactacc aataaaaatt 4200 tttgggaaaa accaaataat gtgaaattta aagttgatag taaggtcatt agtttcgtct 4260 catcagattt gactagtcat attaaaaact gtgttaagag gtttgatcct acttatgatt 4320 gtaacaacat aataagacag tgggctaatt tgagaggtaa cagggcagtc agactgttta 4380 gattgacagg attcagacct ggattgttca gcactattcc tggtattgtt ccttggatga 4440 gattcgattt cttcaagttg ttaactgttc aaaaccttag tcatgatgaa gagacatctt 4500 tccgcacact ccgcctaatg acggagcaca agtcgaataa gtctagtagc gacgattgtg 4560 aattttataa atggatctct cgaagttaat tgaaaaatat ggtgaggaca aagtggaaaa 4620 gtactactcg ttgtacagaa atgcaaaatt ttcagcaggc ggtactactt tatgcgtctt 4680 aaggttgatc aacgaaaaat taatgaaatt caccgaggac aataaacctt caggatttaa 4740 tgacgttgac gtatcggaat ttctagaatg tgtatattgg tttagcttat taccaaaatt 4800 ttttaactga tcagtgatta tcttcaaatt caatttgttt tactgtagtc tggaggtata 4860 tttcgtaagt gatcgcaatc aataaggcgg cgacctaatc gaaaaaataa ttttgaaaag 4920 ttactcgatc tacattaaat atggagaaga ctgacaataa acaaaatgat gatttgaaca 4980 agataactga ggatggagcc gaagttattg aaaggtatga aaagagagaa agcgaggggt 5040 cgaaaagttc aagcaactat gaagtaagag atttgatcac acccgaacac atgaatcctg 5100 aaaaattggg agacatagtt gtttattcaa atagggcaga tgtgatgaca gaggaagatg 5160 aactcaaatt cgaacagtgt atgagggatt tcgcgaagaa gtttgttttt aagaaatctg 5220 actctgaacc atcaccagac gagttcatgg ctttctatgt gagtttggtt caaagttggt 5280 tgacacaaag cacatcaatg aaaaatgcgc ggcagaggaa tttgtcaaac acattatcag 5340 taaaaaatca aaaatacacc tggaggacag ctgaattcat tgattttgtg aagggaaatc 5400 taccacatgt tccgaaccct ttcagacaat atgccaggaa acacgagtca gatattgaaa 5460 ttcttaaagc cactggtaag gtaatgagcg accatcatct acaggcaaaa cacggtgtct 5520 tatcacaata ttgggcttta ccggctgatt acgttaatgg ttctttgata aacatctcag 5580 atgatgattt ggcggcaaac ttgctgatga agtgccaagc tctgaaagga acaagtcagg 5640 aaagaaaatt ctataacgtg tctcagttgg caccgggagg ttgtagtaaa taatggagag 5700 caaagatttt tatgaagaag gagatggtca agtgatcact agagctgaca agtatatgtg 5760 gtgtcaatca catactatgt caatcttgca agtctcggac atgtctttct catttttgaa 5820 tactcaagat gtgactaatt cgaagttttt gtttcaaata aaaatcggtg ttcctgaagg 5880 taatctaata tatgaataca agttcaataa cacacactca cattcattta gacagtcggg 5940 gggtagaaca tggagtaatg cttttgacaa tttgggatca ccacgcattc ttaaacttgg 6000 ggtcatgaat gacataactt tcaagagaga atcgagagat tggattatgt cagtaaatgg 6060 ttttagatat gtaaaaatta aaggtatata caatccgaat gatatgatca tttcattgac 6120 atatcctgcg aatgagttac aattggcctc taataaagtg tatcaaagtg atttcgtcag 6180 gttcaaaagt gtgttttcag agatcaaatt gaatggtgag gacttccaac caaaaacaat 6240 aagatgttac gtgttgaatt taaatagcaa taaggttact aatttaaaga ttagcaaacc 6300 tttggaattt ttaaatgtca agagtttggc tgatttaaac attgaggaat tgaataaaga 6360 cccacctctt ccagaaccag ttaaaccaga cccaccggag gagaaagtga aacatccaga 6420 tccatctcca gaaccactaa aaccagtacc accagtccct aaaccgagtg ataacaatga 6480 taaaccaggg gaatctgata agattaaacc aaaccccact ccctcaccag tagatattcc 6540 aattaaaccg ggtaatgttt ccgacataaa tttctcagtt aaatcgaata taaaaggaat 6600 agaacgtcac aggttattca atctggaaat tgaagacatt ttcaagaaat gtgtggatta 6660 ttatgttaaa ttggggttcg gagaagacca agctgagctg ataatctttc aaatgggggt 6720 gtcgttttgt actagtaaaa atagtattgg tgatttgact tctcacttga tctgggaaga 6780 ttctaaaggt aaactgataa gacttagaaa gagtgatcac gtgaaataca tgaattcact 6840 tacaaaattt tcttgtaatg tggaaagatt ggtccttagg tattacagtg agaagatttt 6900 gaatctcttg aaaaatggat ccttggtacc tgcttcccat cacgccaaga gacgtggggt 6960 taaacaagaa ttcgcgtatc tcgtgactga tttcttcgat tatggtaagc tgaaattatc 7020 agatcaagaa ttgcaagtgt tgaattccga catgcaatat gttttgttaa aaaacaaaca 7080 ccgacgttct attgtaaatg tgaatcaatt gtattaaaaa taaaaccatg gaggttgaat 7140 accctattca agatttcgat ttaagtaaca ataacggtat gagcttgaat gatgtaatag 7200 caaaaaattt taatacaatt gtcaacatca tacagtctca tgcgcttttc gataaaatac 7260 atctagaaaa ttatcgagaa ttgtgtaatg ttttacatgt tatgataaac gaaaacaata 7320 atgacattaa catttattcc gagaacaata gaactttagg tagttttaga gacgctggtt 7380 tagacataaa taatatatca gctaggagaa ataagttgtt cccaactttg actccgtggc 7440 aaataagaga tgttttacaa caacttgaat ctgtgttatg gtttgtcaca gacttgaaaa 7500 ctggtttaat ggatgatttc aagataaaca acttgttttc tatctacaaa atcaataatg 7560 tcggagatct aatcaatagt gtacatagtt atcttaatag tcactataat tttagagaca 7620 atatcaacgc agaattttct cttatgataa gagatgatga ttgtgtcgat agtgtcataa 7680 aaagttttaa aagaaagaaa ttcttaaatg aaaagagtcg ccagaaaatg aaaactctcc 7740 tagccaactg tcttgtctat gagattactt tcaattttgg taacttgggt ttatacatga 7800 accctttaaa aaatttttaa atttttatga gtttataaat aaaattcaat aaattgttag 7860 gttgtttcgg taatagcatc cagcctaggg ccggtcacgg tagttctcta ctagagtgat 7920 cactaaagtc ccaaaattaa ctatatttat ttagaccgta gaattacatt aaataaagtc 7980 gtccttctaa agactccact agggagcgcc ttgaaggact agttagtagc atagctaggc 8040 c 8041 //