Dbfetch
ID JN104385; SV 1; linear; genomic RNA; STD; VRL; 6511 BP. XX AC JN104385; XX DT 29-FEB-2012 (Rel. 111, Created) DT 05-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Cherry leaf roll virus isolate Olm1 segment RNA2, complete sequence. XX KW . XX OS Cherry leaf roll virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-6511 RX DOI; 10.1007/s00705-011-1208-4. RX PUBMED; 22218961. RA Eastwell K.C., Mekuria T.A., Druffel K.L.; RT "Complete nucleotide sequences and genome organization of a cherry isolate RT of cherry leaf roll virus"; RL Arch. Virol. 157(4):761-764(2012). XX RN [2] RP 1-6511 RA Eastwell K.C., Mekuria T.A., Druffel K.L.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Plant Pathology, Washington State University - IAREC, 24106 North Bunn RL Road, Prosser, WA 99350, USA XX DR MD5; 2eb72d640e4bd38f6ec1a4ef4ccb713c. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..6511 FT /organism="Cherry leaf roll virus" FT /segment="RNA2" FT /host="Prunus avium (Bing sweet cherry)" FT /isolate="Olm1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12615" FT CDS 13..4938 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:H6D9G4" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:H6D9G4" FT /protein_id="AFB82732.1" FT /translation="MVRPIVFSNGESVLPKALISEAKMVAAFLKSTRNPAGFWVTFLAQ FT GTSLTPSQVALCAINGLVSRQTVEIHSHGPSAEVFWSALQARLRSFLRAHRQRVTSLLA FT LCCEAYEARDLCRYQRQRAAYLARGAACRAKALRKKKTALRKERAAQLAQRQLEGERRA FT AARRARLARKGQQVLRRKLAALFSPPPPFPTSEWAWEPLLSSPLPAFRDFFPDATIVAK FT AQGKGASLLSTLPEGVDSFLPASFPKRLTLQSAQTLTGNYGAFIWRTIYKAVAAQRSFL FT SAFYNFFLCKKEEIVEVPKRETPIEVDPYIGVDHWGLYSKFLLSTPLSPPALVGKFHSA FT GSYQYCSLVRSAEEMDMHFQCSPSRSYKHSPLSPPILVGKYHSAGIYQYCLLPRFGLED FT VDMHLHSLFEDCKECQISAGPPPLEFAPLFLQPLNRGRLFLADKSAPRSAGELDMCVHS FT IFDQCTYPEYASSYLTYSPPSLEDCVRVGKEVRKRAVIVHAALCCWNRLLMVSTTNPLF FT LEKKVRGLKSPSASAILDPMDMDVHPLLCECAECEIDSSHPPLAPASITLSGPPTLFTS FT RPRRSLPPYQGHSLVYTPPKCVHCKGLEEIPTTTAENDAYLTITGRYGVCICGGRRVVS FT TLAAASTYSYAQRAGWKFLSPNRRYFPISERICDSQGNWLLWKSFDSLYGSLPKDELPR FT SRIERRGFLRYVVRAPVPQEEEIFVDAPLSLPVQSGIGANVQTIHQQGESSGTVQPAFT FT GGSRPLGLSDGAAATQAPFRQEARQRWLGRRAQDLESQSDRIRRIADAQGISYESARAA FT YGAPDEAVPSQAPILPQLDEAYTRKSVIPRFLLGNRASTRAQRTVDVVLSSPSVDTENH FT TATFYFNPVSQQEMELMRSSGNTMISIDAVEISIDPVGMPGDDTDLTVLVMWCQNSDPQ FT RAILGALSTFVGNGLARCVFYPGLKLMHQHCSAPDGRVLKVMVSSTNSTLIGGLPQAQI FT SIGTLRQHIGPGHDRTISRALATAQVQGYNVRAVQQGNATVFAPQGGQVEGTPSTNLQM FT GAGETLVQTGGTHWKLQRSASSRFVVEGSSRLSGARSMSNLRIDRGNHDGVPNCPLRQH FT EGHDGDGARGQQQPPINLPLQSRVTPGMHWSAVTPFKCAAEAAENTILARWSLRSIISE FT SGTDAWTKWQRELRTTFLVTGTIAMSVNIMAGTTLGLVCDVFNRSKLLDTFPSTLGQNM FT PQRVFPLSNPLERNFSFSMGELLGYTMHPQATAFEDVQFILYVLNTNDVACAAEWGGHI FT LWQMKDDAGAPYELQLPVVPKDGARLDVWRGPATFAQGSFPSTTNVNLGFAEPRTVLTG FT YAPITSFHQAALSYFISYGGTIHGRLVKIGSGLVQVDVALAMWHDNADGVEFKELIKIP FT HVLLNGGDGEFSLPLNAPFGHTSTRDRGPTMAVCLVSGVVAPKDCSAPYRFMVYFDRVE FT FDTQLPPVIATRLQFLWASFSGFTPVVPEAPRTWMIPCRLSGYKVEGATLKMEAHPLAR FT LVASAGMFQGTMRFILRWTFASSLTTPTTYVQLVHKFGTTTSSESYLTKLAHASQSTEL FT SLDVVVAGLGGFMRSGVAESRENFIEISLSKPGDLAKLDIIIELLPGFRFRGPTITPLV FT RLI" FT mat_peptide 13..2196 FT /product="hypothetical protein" FT mat_peptide 2197..3396 FT /product="putative movement protein" FT mat_peptide 3397..4935 FT /product="capsid protein" FT polyA_site 6492 XX SQ Sequence 6511 BP; 1525 A; 1526 C; 1589 G; 1871 T; 0 other; tttgaaaaca aaatggttag gcccattgta ttctcgaacg gcgagtccgt tctcccaaaa 60 gccctcattt ctgaggccaa gatggttgca gccttcttga aatccaccag gaaccctgct 120 ggtttctggg ttacttttct cgctcagggt acctccctga ctccatccca agtggcactc 180 tgtgccatta acggcctcgt gagccgtcag actgtcgaga ttcattctca cggtccgtcg 240 gccgaggttt tctggtctgc tcttcaggcc agactccggt cctttcttag ggcccaccgc 300 cagagggtta ccagccttct ggctctgtgc tgcgaagcct atgaggctcg cgacctttgc 360 cgttaccagc ggcagagggc tgcttacctc gctcgaggtg cagcttgcag ggctaaggcc 420 ctgcgcaaaa aaaagaccgc tctccggaag gagagagcgg ctcagctggc tcagcgccag 480 ctggaaggcg aacgccgggc agctgcccgg cgggcaaggc tggcccgcaa gggtcagcag 540 gttttacgcc gcaagcttgc ggctctcttc tcccctcctc ctcccttccc tacttccgag 600 tgggcttggg aacctctcct ttcctccccc ctcccggctt ttcgggattt ctttcctgat 660 gccacaatag tggctaaggc ccaaggcaag ggggcttcct tgctatctac tctcccagag 720 ggagtggatt cctttctccc agcctctttc cctaagaggc tcactttaca gtctgcccag 780 actttaacgg gtaactatgg tgcctttata tggaggacca tttataaggc tgttgcagcg 840 cagcgatctt ttttgtctgc cttctataat tttttccttt gtaagaagga ggagattgtg 900 gaagttccaa agcgtgaaac gccaatagag gttgacccct atattggagt ggatcactgg 960 ggcttgtatt ctaaattttt attgagtact cccctttccc cgccagctct tgttggcaaa 1020 ttccacagtg ctggctctta ccagtattgt tctttagtgc gtagtgctga ggaaatggac 1080 atgcattttc agtgttcacc ctctcggagc tacaagcact ctcctctctc tccaccgatt 1140 cttgttggca agtatcacag tgctggtatc taccagtatt gtcttttacc tcggtttgga 1200 cttgaagatg tggatatgca cttacattct ttgtttgaag attgtaaaga atgccagata 1260 agcgctggcc ctccaccctt agagttcgca cctctattct tgcaacctct taatagaggt 1320 agactttttc ttgccgataa atctgcgccg agaagtgcag gtgaattgga catgtgtgtg 1380 cactcaattt ttgatcagtg cacttacccg gagtatgcaa gctcctactt aacttacagt 1440 cctcctagtc tagaggactg tgtcagggtg ggtaaagaag tgcgcaagcg tgctgtgata 1500 gttcatgctg cactgtgttg ttggaaccgc cttttaatgg tttccacaac gaacccactt 1560 ttcctcgaga agaaggttag aggattgaag tcgcctagtg cgtcggcaat tttagatccg 1620 atggacatgg atgtgcatcc actactctgt gagtgcgccg aatgtgagat agattcctct 1680 caccctccat tggctccagc ctccataact ttgtcgggtc ctcctaccct ttttactagt 1740 aggccccggc gttcattgcc cccttatcag gggcattctt tagtgtacac ccctcctaag 1800 tgtgtgcact gcaaaggtct ggaagaaatt cctacaacta ctgcagagaa tgatgcctat 1860 cttactatca ctggtaggta tggcgtttgc atttgtggtg ggcgtagagt agtttctact 1920 ctggctgctg cttccaccta ctcttatgcc caaagagctg gttggaaatt tctttcccca 1980 aaccgccgat attttccaat atcggagagg atctgtgata gccagggcaa ttggctgtta 2040 tggaaaagtt tcgactctct atacgggagt cttcctaagg acgagttgcc ccgctcgaga 2100 attgaaagaa ggggttttct tcgctatgtg gtgcgtgctc ccgtaccaca agaggaagaa 2160 atttttgtag acgcaccgct cagcctaccg gtgcagtctg gaattggagc aaatgtgcaa 2220 acaattcacc aacaaggcga atcaagtgga actgtacaac ctgccttcac gggcggaagt 2280 cgaccacttg gtttgtctga tggtgctgcg gcaacgcagg ctccttttag gcaagaagca 2340 cgccagcgat ggctggggag acgtgcacaa gatctggagt cccagagtga ccgtattcga 2400 agaatcgcgg atgcccaggg aatttcatac gagtccgcga gggctgcgta tggagctcca 2460 gatgaagctg tgccttcaca agcaccaatt ttgcctcaac ttgacgaggc ttacacaaga 2520 aagtctgtta taccccgctt tttattgggg aacagagcat cgacacgtgc tcaacgcact 2580 gttgacgtag ttctttcgtc gcctagtgta gatacagaaa atcatacggc gactttttat 2640 tttaatcctg tctctcaaca ggagatggag ctcatgagat ctagcggaaa tactatgatc 2700 tccattgacg cagttgagat ctctattgac cccgtgggta tgcccgggga cgatacagac 2760 ctcactgtgt tagtgatgtg gtgtcagaat tctgacccgc agagagctat tctcggtgct 2820 ctatccacat ttgtgggtaa tggcttggcc aggtgtgttt tttatcctgg tcttaagtta 2880 atgcaccaac actgtagtgc tccagatggc cgtgttttaa aggtcatggt atcgagcacg 2940 aactctacgt tgatcggggg attgccacaa gcgcaaatat ctattggcac tcttcgtcaa 3000 catattggtc ctggccacga taggaccatt tcacgagcgc ttgctacagc acaagtacaa 3060 ggttacaatg tacgtgctgt gcagcaagga aatgccaccg tgtttgcccc ccaaggcggg 3120 caggtggaag gtactccaag caccaattta caaatgggtg cgggtgaaac tcttgtgcaa 3180 acaggaggga cacactggaa actacaacgc tctgctagca gtcgcttcgt agtggaaggt 3240 tcttcgcgcc tatcgggtgc ccgatctatg tccaatttga ggattgatcg tggcaaccac 3300 gatggtgtgc ccaattgccc tttgcgtcaa cacgaggggc atgatggaga tggagctcgg 3360 gggcaacaac aacccccaat aaatctgccc ttgcaatcca gggtaactcc tggtatgcat 3420 tggtcagcag tcacgccttt taagtgcgct gctgaagctg cagaaaatac aatcctcgct 3480 cgttggtccc tgcgctctat tattagtgag agcgggactg atgcttggac taagtggcag 3540 cgtgaattac gcaccacttt tttagttact ggtaccattg ccatgtctgt aaatattatg 3600 gctggtacca ccttaggttt agtttgcgat gtttttaatc gctctaaatt attagatact 3660 tttcctagta ctctggggca gaatatgcct cagagagttt tccctttgag taacccactg 3720 gagagaaatt ttagcttttc catgggcgaa ttactaggtt atactatgca tcctcaggca 3780 acagcctttg aggatgtaca attcattctc tatgtcctca acacgaatga tgttgcttgt 3840 gcagcagagt ggggaggaca cattctttgg caaatgaaag acgatgccgg tgctccttac 3900 gaactacaat tacctgtggt tccgaaggac ggcgctcgtc tggatgtctg gcggggtcct 3960 gcaacctttg cgcagggctc atttccaagc acaactaatg taaatttagg tttcgccgaa 4020 cctagaactg tgcttacagg gtacgctcct attacttctt tccaccaagc ggccctgtca 4080 tattttatat cttatggtgg aactatacat ggccgtcttg taaagattgg ctctggttta 4140 gtgcaagttg atgttgcact ggccatgtgg catgacaatg ctgatggggt ggaattcaag 4200 gaactcataa aaatacccca tgtattgctc aatggcggcg atggggaatt ctctttaccc 4260 ctaaacgccc cttttgggca cacatcaact agagatcgcg gtcctactat ggccgtttgt 4320 ctcgtatctg gagtggtggc tccaaaagat tgctctgccc catatcgatt tatggtatat 4380 tttgataggg tagagtttga cacgcaattg cctccagtga ttgcaactag acttcagttc 4440 ctctgggctt ccttttcagg atttacccca gtggtgccag aagctccacg cacctggatg 4500 ataccttgcc gtctttcggg ctacaaggtt gaaggtgcaa ctcttaaaat ggaggcacat 4560 ccacttgccc gcttagtagc ttctgcgggt atgtttcaag ggacaatgag gttcatctta 4620 cgatggactt ttgcgtcctc attaacaact cccactactt atgtgcaact tgtgcataag 4680 tttgggacta ctacgtcaag tgaatcttac ttgacaaaac tagctcatgc ttctcaaagc 4740 actgagctta gtcttgacgt ggtagtggct ggactgggcg gttttatgcg ctcaggtgta 4800 gctgagagta gagaaaattt tattgaaatc tctctcagta aacctggcga cctagctaag 4860 ctcgacataa ttatcgagtt gttgcctggt ttcaggttta ggggtccaac aataacccct 4920 ttggtccgtc ttatttagga cccatctgtg gttggtagtt tcctaaacta cctagctccc 4980 agctatctct gggacgcttg gttgccgtaa gcaaccttca aaaggatgtc atcatttagc 5040 gttttaccga aaggttaaag atgtgaatgg cagcgtaacg cactgtcaat cctccataat 5100 ggttccacga gtcgacacgt ggattttgag atagtggtaa accactcatt cagagtaacg 5160 cctgaatgta ttagtgctgc tgcatggtgt tcaccgtaag gtcggtactc ctgaaaagga 5220 atcctgttcg cttgcgtggt cggtgacacc ttctgcagat ttgcattagt ttgactcctg 5280 gaaagacagg tgacgtggag agcaaagctc tatccggtct gccaggtgca agacctaaat 5340 ccaatgcacc atccccaacc acatgggtga aatgtggacg gtggagttgc cggtcctagc 5400 tcttaagtgc atgttctgaa aataacatgc tccttttatt tgtttgaggg tttcaaacat 5460 catatctttt atgctttatt ttattttatt gtgtagtcat acgcacacag gaattgatcc 5520 cctgtgtagt acgcgaaagt ctcctcactt tgtagcacct cttgcttggt gtccacgagt 5580 gctctgctac gtgaagttct tcatttagct atatttattc tggaattacg gacgtagtcc 5640 ccttcagagc tgatgtgtag gatgcccgga tagacttcaa acgaagggtt ccccgaaatc 5700 ggcccacgtt cctggcggga atagtgaagg tcatctccag atagacgtag tttaaaatta 5760 ttttgaactt aacgaaagac gaggcgagta gttagcgttg tgtcaaacct gagtggtttt 5820 cagctcaggt tagtcttact ttataggctc agactagtct tagtcgaaac tagtaaagtt 5880 gaaattagtg attaagtcca ggaagtttgt agtaaaggcg ataagtccat cctaccccat 5940 atcgaatggg atgcgtggtt atcaaatttc acgaattctt ctgcttggta atatcactag 6000 tggattcttg aaaagttaga catgttgagt gggcgttctc atttcaaacg tcattaaacg 6060 gaatatcaca attctggcga ccgtgtaacg gcaacagtgt taaggtgaca ctggtggagt 6120 ggctgcaacc atttccatgc gaccggtctt agtagtatta aggatgctac agccaagggt 6180 tccgtaagtt ttagttaacg aatatctact gccatccgta atagtgtgtg gtggtcctca 6240 atcttacttg gtatatgagc cgggtgtgct ggtaacacat ctgtgacttt gaatctcaag 6300 cccaagaatt ttgggggtta tgtgggtaga tagcgttagc aagggggttg tttagcaata 6360 tttgttgccc cgatcagttt tcaaaatttg cttattgtat gagtgtcgga ctcaagcagt 6420 gtctaggttt taaattgttt agatttaaat gtttactttt atagttttcc ttttacgtaa 6480 tctttccgac gcaaaaaaaa aaaaaaaaaa a 6511 //