ID JN103439; SV 1; circular; genomic DNA; STD; VRL; 2733 BP. XX AC JN103439; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:BA-Cds1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2733 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2733 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; e2d0d477bbddf04cde9b6b6fdfcccd77. XX FH Key Location/Qualifiers FH FT source 1..2733 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:BA-Cds1:10" FT /mol_type="genomic DNA" FT /country="Brazil:Costa do Sauipe, Bahia" FT /collection_date="02-Jan-2010" FT /db_xref="taxon:666144" FT CDS 296..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2Q2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2Q2" FT /protein_id="AER09345.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWINRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2P3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2P3" FT /protein_id="AER09346.1" FT /translation="MDSRTGEPITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNSVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09347.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2588) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2Q5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2Q5" FT /protein_id="AER09344.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNGVAYNVIDIDDVAPHYLKLKHWKELV FT GAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSSLRSWTLHNARFV FT FLESPLYQGATQSGETESHSP" FT CDS complement(2135..2428) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09348.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2733 BP; 651 A; 637 C; 744 G; 701 T; 0 other; accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatggcaaa aaactcggcc catgatgaga ggagatgata gggggaccat gtcccaaaaa 120 aggaacgtat gatgggacca cataaagaca gtgattacgc ccaataagga ttgggcaaca 180 aagccaagat attgaaatat acttggccga taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gttctgtagt gcagaatgcc 300 taagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc gcaacgccaa 360 ctactcccct cgtggaggca cgggctcaag accaagcagg gccgctgctt ggattaatcg 420 gcccatgtac aggaagccca gaatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtcata cgagcagcgc cacgatatat cccacaccgg 540 caaggtgata tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacggccatg gatttcggac aggtttttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatctccgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctatttc tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt cttacatacg gtctgtccgt tgcgaaggtg acagctcgaa ttacattgtt 1140 aaggctaata acgcccacgc tatttagata catgaggacc aaatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttgtacgt ggtagaccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgggttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatgc 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg caccttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgatga gttttcctct 1620 ttctcgagga agtctttata gctggaccct tccccaggat tgcaaagcac gattgatggg 1680 ataccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgata 1800 tcgatgacgt tgtatgcgac tccgtttgag tagaccctcg agttgaagtc gaggtgtcca 1860 ctgagataat tgtggggacc taaagcacgc gcccacatcg tcttccccgt cctcgaatct 1920 ccttcgacga tcagacttat cggtctgttt ggccgcgctt cggcggataa ggcgaaatac 1980 tcatcggccc acgactgcat ttcgtccgga acgttagtga atgaggacaa cgggaacgga 2040 gggacccatg gttccggagc cttagcgaag attttctgga catgtgcttg caccttgtct 2100 aaatggagga cgaaatcccg cggttgctct tcccttagaa tctgcagtgc ttgcgctgca 2160 gactcggcgt taaggacttt ggcgtatgtg tcgttagccg attggcaacc gcctctagca 2220 cttctcccgt cgatctggaa tgttccccat tccagagtat ccccgtcttt gtcgacgtag 2280 gacttgacgt cggagctcga cttagctccc tgtacgttcg gatggaaatg tgctgaccgg 2340 gacggggata ccaggtcgaa gaatctttga ttctggcatt tgaacttccc ctcgaattgg 2400 agaagcacgt ggagatgagg ctccccatta tcgtggagct ctctggcgac cttgatgaac 2460 ttcttgttcg tcggcgttgc tagggcttgc aattgggaaa gtgcttcctc tttggtcagg 2520 gagcactttg gataagtgag gaaataattt ctggcgttta ttaggaaacg ctttggcgcc 2580 gatggcattt tggtaaataa agggatgaga cccaatagag aggacccgat agctctcgtt 2640 tcaacttggt gaaatgaatc ggggaatggg tccttattta tagcagagtc cgttagggta 2700 tatttgccac gtgtcggcca tccgtataat att 2733 //