ID JN103438; SV 1; circular; genomic DNA; STD; VRL; 2710 BP. XX AC JN103438; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:PB-Alh1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2710 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2710 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 2aa6028bcd1f766a1625e92b01c3b341. XX FH Key Location/Qualifiers FH FT source 1..2710 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:PB-Alh1:10" FT /mol_type="genomic DNA" FT /country="Brazil:Alhandra, Paraiba" FT /collection_date="14-Apr-2010" FT /db_xref="taxon:666144" FT CDS 296..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2P7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2P7" FT /protein_id="AER09340.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09341.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09342.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2654) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2Q0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2Q0" FT /protein_id="AER09339.1" FT /translation="MRHQTPIHFTKLSETPIGASFIFTNMPLSKPFRINARNYFLTYPK FT CSLTKEEALSQLQALATPTNKKFIKVARELHENGEPHLHVLLQFEGKFQCKNNRFFDLV FT SPSRSAHFHPNVQGAKSSSDVKSYVDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVL FT NAESAAQALQILREEQPRDFVLHLDKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQ FT SWADEYFALSAEARPNRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEA FT AYNVIDDVAPHYLKLKHWKELVGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYK FT DFLDKEENSALRSWTLHNARFVFLESPLYQSATQSGETESHSP" FT CDS complement(2129..2422) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8G2Q1" FT /protein_id="AER09343.1" FT /translation="MGSLISTCFSSSRGNSSARITDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2710 BP; 637 A; 629 C; 741 G; 703 T; 0 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatggcaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtcccaaaaa 120 aggaacatat gatgggacca cataaagaca gtgattaggc ccaataagga ttgggcaaca 180 aagccaagat attcaaatat acttggccga taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gttctgtgtt gcagaatgcc 300 caagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc gcaacgccaa 360 ctactcccct cgtggaggca cgggctcaag accaagcagg gccgctgctt gggttaatcg 420 gcccatgtac aggaagccca gaatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtctta cgagcagcgc cacgacatat ctcatgtcgg 540 caaggtgata tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttatgg 720 gacggccatg gatttcggac aggtgtttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatcttcgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttctgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctatttc tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt cttacatacg gtctgtccgt tgcgaaggtg acagcgcgaa ttacattgtt 1140 aaggctaata acgcccacgt tatttagata catgaggacc aaatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttgtacgt ggtagaccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgagttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgattc 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg cactttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgctga gttttcctct 1620 ttgtcgagga agtctttata gctggaccct tcaccaggat tgcaaagcac gattgatggg 1680 ataccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gctctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgatg 1800 acgttgtatg cagcctcgtt tgagtagacc ctcgagttga agtcgaggtg tccactgaga 1860 taattgtggg gacctaaagc acgcgcccac atcgtcttcc ccgtcctcga atctccctcg 1920 acgatcagac ttatcggtct gtttggccgc gcttcggcgg ataaggcgaa atactcatcg 1980 gcccacgact gcatttcgtc cggaacgtta gtgaatgagg acaacgggaa cggagggacc 2040 catggttccg gagccttagc gaagattttc tggacatgtg cttgcacctt gtctaaatgg 2100 aggacgaaat cccgcggttg ctcttccctt agaatctgca gtgcttgcgc tgcagactcg 2160 gcgttaagga ctttggcgta tgtgtcgtta gccgattggc aaccgcctct agcacttctc 2220 ccgtcgatct ggaatgttcc ccattccaga gtatccccgt ctttgtcgac gtaggacttg 2280 acgtcggagc tcgacttagc tccctgtacg ttcggatgga aatgtgctga ccgggacggg 2340 gataccaggt cgaagaatct gttattcttg cactggaatt tcccctcgaa ctggagaagc 2400 acgtggagat gaggctcccc attttcgtgg agctctctgg cgaccttgat gaacttcttg 2460 ttcgtcggtg ttgctagggc ttgcaattgg gaaagtgctt cctctttggt cagggagcac 2520 tttggataag tgaggaaata atttctggcg tttattctga aaggctttga gagtggcata 2580 tttgtaaata tgaatgaggc accgattggg gtctcgctca acttggtgaa atgaatcggt 2640 gtctggtgtc tcatttatag cagagtccgt tagggtatat ttgccacgtg tcggccatcc 2700 gtataatatt 2710 //