ID JN103436; SV 1; circular; genomic DNA; STD; VRL; 2724 BP. XX AC JN103436; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:AL-Mac6:10 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2724 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2724 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; c4a4823cfb1e0ba7d74ce285d8269fcd. XX FH Key Location/Qualifiers FH FT source 1..2724 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:AL-Mac6:10" FT /mol_type="genomic DNA" FT /country="Brazil:Maceio, Alagoas" FT /collection_date="04-Jan-2010" FT /db_xref="taxon:666144" FT CDS 295..1050 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2N7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2N7" FT /protein_id="AER09330.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVMCVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1047..1445) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09331.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1192..1581) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09332.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1502..2581) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2P0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2P0" FT /protein_id="AER09329.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEXKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VNKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQSATQSGETESHSP" FT CDS complement(2128..2421) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8G2P1" FT /protein_id="AER09333.1" FT /translation="MGSLISTCFSNSRXSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2724 BP; 645 A; 635 C; 742 G; 701 T; 1 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatgacaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtcccaaaaa 120 ggaacgtatg atgggaccac ataaagacag tgattacgcc caataaggat tgggcaacaa 180 agccaagata ttgaaatata cttggccgat aagttgataa agttgtataa atgggaccat 240 cacccttcgt ggtctagtca gccccgaata ggactcgacg ttctgtggtg cagaatgcct 300 aagcgtgatg ccccatggcg aacggtttca gggaccacga aggttagccg caacgccaac 360 tactcccctc gtggaggcac gggctcaaga ccaagcaggg ccgctgcttg ggttaatcgg 420 cccatgtaca ggaagcccag aatatatcgg atgtataggt cacccgatgt gcccagaggg 480 tgtgaaggcc cgtgcaaggt gcagtcgtac gagcagcgcc acgatatatc ccacaccggc 540 aaggtgatgt gcgtgtctga cattacccgc ggtaatggta ttactcaccg cgttggtaag 600 cgattttgcg tcaagtctat gtacatccta ggcaaggtct ggatggacga gaacatcaag 660 ttgaagaacc acacgaacac ggtgatgttg tggttagtta gggacaggag accttacggg 720 acgcccatgg atttcggaca ggtttttaac ctgtttgaca acgagccaag caccgctacg 780 gtgaagaacg atcttcgtga tcgttttcag gtgctgaaca ggttccacgt gaaggtcact 840 ggtggacagt acgcgagcaa cgagcaggcg ctggttaggc gcttttggag ggtgaacacc 900 cacgtgacgt ataaccacca ggaggcggcg aagtacgaga accatacgga gaacgccctg 960 ttattgtata tggcatgtac tcatgcctct aaccctgtat acgcgacgct caagattcga 1020 atctatttct atgattcgat attgaattaa taaagtttga attgtattga atggttctcg 1080 cgtacacgtc ttacatacgg tctgtccgtt gcgaaggtga cagctcgaat tacattgtta 1140 aggctaataa cgcccacgtt atttagatac atgaggacca aatgtttaaa cctatttaaa 1200 taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgag gaacgccttg 1260 tggagatcca acgctttcct caggttgtgg ttgaaccgga tttgtacgtg gtagaccctc 1320 gtcgttctgg acaggatctc caccgcgtcg tatatcttga aatacagggg atttgttatc 1380 tcccatgtat acacgccatt ctccgcttga ggcgcagtga tgagttcccc tgtgcgtgaa 1440 tccattattc gcgcagttta ggtggatgta tattgtacat ccacagttca ggtcgatacg 1500 tctacggcga atggctctcc gtttcgccac tctgtgttgc actttgatag aggggagatt 1560 cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg gagtgctgag ttttcctctt 1620 tctcgaggaa gtctttatag ctggaccctt cccctggatt gcaaagcacg attgatggga 1680 taccgccttt aatttgaacg ggtttcccgt atttgcagtt actttgccag tctcgttggg 1740 ccccaacgag ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga 1800 cgttgtatgc gacctcgttt gagtagaccc tcgagttgaa atcgaggtgt ccactgagat 1860 aattgtgggg acctaaagca cgcgcccaca tcgtcttccc cgtcctcgaa tctccctcga 1920 cgatcagact tatcggtctg tttggccgcg cttcggcgga taaggcgaaa tactcatcgg 1980 cccacgactg catttcgtcc ggaacgttag tgaatgagga caacgggaac ggagggaccc 2040 atggttccgg agccttagcg aagattttct ggacatgtgc ttgcaccttg tctaaatgga 2100 ggacgaaatc ccgcggttgc tcttccctca gaatctgcag tgcttgcgct gcagactcgg 2160 cgttaaggac tttggcgtat gtgtcgttag ccgattggca accgcctcta gcacttctcc 2220 cgtcgatctg gaatgttccc cattccagag tatccccgtc tttgttgacg taggacttga 2280 cgtcggagct cgacttagct ccctgtacgt tcggatggaa atgtgctgac cgggacgggg 2340 ataccaggtc gaagaatctt tgattctggc atttgaactt cncctcgaat tggagaagca 2400 cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg aacttcttgt 2460 tcgtcggcgt tgctagggct tgcaattggg aaagtgcttc ctctttggtc agggagcact 2520 ttggataagt gaggaaataa tttctggcgt ttattaggaa acgctttggc gccgatggca 2580 ttttggtaaa taaggatgag acccaataga gaggacccga tagctctcgt ttcaacttgg 2640 tgaaatgaat cggggaatgg gtccttattt atagcagagt ccgttagggt atatttgcca 2700 cgtgtcggcc atccgtataa tatt 2724 //