ID JN103435; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC JN103435; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:AL-Smc1:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2726 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2726 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; f80c7a54d4281c2c85ffae941ecfe638. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:AL-Smc1:09" FT /mol_type="genomic DNA" FT /country="Brazil:Sao Miguel dos Campos, Alagoas" FT /collection_date="22-Dec-2009" FT /db_xref="taxon:666144" FT CDS 295..1050 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2N2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2N2" FT /protein_id="AER09325.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVMCVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSISN" FT CDS complement(1047..1445) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2N3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2N3" FT /protein_id="AER09326.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATERPYVRRVRENHSIQFKLY" FT CDS complement(1192..1581) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09327.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1502..2581) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2N5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2N5" FT /protein_id="AER09324.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCKNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSGEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQSATQSGETESHSP" FT CDS complement(2128..2421) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09328.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2726 BP; 644 A; 642 C; 741 G; 699 T; 0 other; accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 agatgacaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtccctaaaa 120 ggaacgtatg atgggaccac ataaagagag tgattacgcc caatacggat tgggcaacaa 180 agccaagata ttcaaatata cttggccgat aagttgataa agttgtataa atgggaccat 240 cacccttcgt ggtctagtca gccccgaata ggactcgacg ttctgtggtg cagaatgcct 300 aagcgtgatg ccccatggcg aacggtttca gggaccacga aggttagccg caacgccaac 360 tactcccctc gtggaggcac gggctcaaga ccaagcaggg ccgctgcttg ggttaatcgg 420 cccatgtaca ggaagcccag gatatatcgg atgtataggt cacccgatgt gcccagaggg 480 tgtgaagggc cgtgcaaggt gcagtcttac gagcagcgcc acgatatatc ccacaccggc 540 aaggtgatgt gcgtgtctga cattacccgc ggtaatggta ttactcaccg cgttggtaag 600 cgattttgcg tcaagtctat gtacatccta ggcaaggtct ggatggacga gaacatcaag 660 ttgaagaacc acacgaacac ggtgatgttg tggttagtta gggacaggag accttacggg 720 acgcccatgg atttcggaca ggtttttaac ctgtttgaca acgagccaag caccgctacg 780 gtgaagaacg atcttcgtga tcgttttcag gtgctgaaca ggttccacgt gaaggtcact 840 ggtggacagt acgcgagcaa cgagcaggcg ctggttaggc gcttttggag ggtgaacacc 900 cacgtgacgt ataaccacca ggaggcggcg aagtacgaga accatacgga gaacgccctg 960 ttattgtata tggcatgtac tcatgcctct aaccctgtat acgcgacgct caagattcga 1020 atctatttct acgattcgat atcgaattaa taaagtttga attgtattga atggttctcg 1080 cgtacacgtc ttacatacgg tctttccgtt gcgaaggtga cagcgcgaat tacattgtta 1140 aggctaataa cgcccacgtt atttagatac atgaggacca aatgtttaaa cctatttaaa 1200 taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgag gaacgccttg 1260 tggagatcca acgctttcct caggttgtgg ttgaaccgga tttgtacgtg gtagaccctc 1320 gtcgttctgg acaggatctc caccgcgtcg tatatcttga aatacagggg atttgttatc 1380 tcccatgtat acacgccatt ctccgcttga ggcgcagtga tgagttcccc tgtgcgtgaa 1440 tccattattc gcgcagttta ggtggatgta tattgtacat ccacagttca ggtcgatacg 1500 tctacggcga atggctctcc gtttcgccac tctgtgttgc actttgatag aggggagatt 1560 cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg gagtgctgag ttttcctctt 1620 tctcgaggaa gtctttatag ctggaccctt cccctggatt gcaaagcacg attgatggga 1680 taccgccttt aatttgaacg ggtttcccgt atttgcagtt actttgccag tctcgttggg 1740 ccccaacgag ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga 1800 cgttgtatgc gacttcgttc gagtagaccc tcgagttgaa gtcgaggtgt ccactgagat 1860 aattgtgggg acctaaagca cgcgcccaca tcgtcttccc cgtcctcgaa tctccctcca 1920 cgatcagact tatcggtctg ttcggccgcg cttcgccgga taaggcgaaa tactcatcgg 1980 cccacgactg catttcgtcc ggaacattag tgaatgagga caacgggaac ggagggaccc 2040 agggttccgg agccttagcg aagattttct ggacatgtgc ttgcaccttg tctaaatgga 2100 ggacgaaatc ccgcggttgc tcttccctta gaatctgcag tgcttgcgct gcagactcgg 2160 cgttaaggac tttggcgtat gtgtcgttag ccgattggca accgcctcta gcacttctcc 2220 cgtcgatctg gaatgttccc cattccagag tatccccgtc tttgtcgacg taggacttga 2280 cgtcggagct cgacttagct ccctgtacgt tcggatggaa atgtgctgac cgggacgggg 2340 ataccaggtc gaagaatctt tgattcttgc atttgaactt cccctcgaat tggagaagca 2400 cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg aatttcttgt 2460 tcgtcggcgt tgctagggct tgcaattggg aaagtgcttc ctctttggtc agggagcact 2520 ttggataagt gaggaaataa tttctggcgt ttattaggaa acgctttggc gccgatggca 2580 ttttggtaaa taaagggatg agacccaata gagaggaccc gatagctctc gtttcaactt 2640 ggtgaaatga atcggggaac gggtccccat ttatagcaga gtccgttagg gtatatttgc 2700 cacgtgtcgg ccatccgtat aatatt 2726 //