ID JN103434; SV 1; circular; genomic DNA; STD; VRL; 2727 BP. XX AC JN103434; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:AL-Ril1:07 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2727 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2727 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 859fa7928eb5cf71de7f7730b81217e4. XX FH Key Location/Qualifiers FH FT source 1..2727 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:AL-Ril1:07" FT /mol_type="genomic DNA" FT /country="Brazil:Rio Largo, Alagoas" FT /collection_date="Oct-2007" FT /db_xref="taxon:666144" FT CDS 296..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2M7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2M7" FT /protein_id="AER09320.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMEFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09321.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09322.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2582) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2N0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2N0" FT /protein_id="AER09319.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQSATQSGETESHSP" FT CDS complement(2129..2422) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8G2N1" FT /protein_id="AER09323.1" FT /translation="MGSLISTCFSNSRASSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPNLQRKHCRF" XX SQ Sequence 2727 BP; 643 A; 630 C; 748 G; 706 T; 0 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 agatggcaaa aaactcggcc catgatgagg agagatgata aggggaccac gtcccaaaaa 120 aggaacgtat gatgggacca cataaagaca gtgattacgc ccaataagga ttgggcaacc 180 aagccaagat attcaaatat acttggccga taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gttttgtggt gcagaatgcc 300 caagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc gcaacgccaa 360 ctactcccct cgtggaggca cgggctcaag accaagcagg gccgctgctt gggttaatcg 420 gcccatgtac aggaagccca ggatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtctta cgagcagcgc cacgacatat ctcatgtcgg 540 caaggtgatg tgtgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacgcccatg gagttcggac aggtttttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatcttcgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctatttt tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt cttacatacg gtctgtccgt tgcgaaggtg acagcgcgaa ttacattgtt 1140 aaggctaata acgcccacgt tatttagata catgaggact aaatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttgtacgt ggtagaccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgagttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatac 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg cactttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgctga gttttcctct 1620 ttctcgagga agtctttata gctggaccct tctcctggat tgcaaagcac gattgatggg 1680 ataccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgatg 1800 acgttgtatg cgacctcgtt tgagtagacc ctcgagttga agtcgaggtg tccactgaga 1860 taattgtggg gacctaaagc acgcgcccac atcgtcttcc ccgtcctcga atctccctcg 1920 acgatcagac ttatcggtct gtttggccgc gcttcggcgg ataaggcgaa atactcatcg 1980 gcccacgact gcatttcgtc cggaacgtta gtgaatgagg acaacgggaa cggagggacc 2040 catggttccg gagccttagc gaagattttc tggacatgtg cttgcacctt gtctaaatgg 2100 aggacgaaat cccgcggttg ctcttccctt agaatctgca gtgcttgcgc tgcagattcg 2160 gcgttaagga ctttggcgta tgtgtcgtta gccgattggc aaccgcctct agcacttctc 2220 ccgtcgatct ggaatgttcc ccattccaga gtatccccgt ctttgtcgac gtaggacttg 2280 acgtcggagc tcgacttagc tccctgtacg ttcggatgga aatgtgctga ccgggacggg 2340 gataccaggt cgaagaatct ttgattctgg catttgaact tgccctcgaa ttggagaagc 2400 acgtggagat gaggctcccc attgtcgtgg agctctctgg cgaccttgat gaacttcttg 2460 ttcgtcggcg ttgctagggc ttgcaattgg gaaagtgctt cctctttggt cagggagcac 2520 tttggataag tgaggaaata atttctggcg tttattagga aacgctttgg cgccgatggc 2580 attttggtaa ataaagggat gagacccaat agagaggacc cgatagctct cgtttcaact 2640 tggtgaaatg aatcggggaa tgggtcctta tttatagcag agtccgttag ggtatatttg 2700 ccacgtgtcg gccatccgta taatatt 2727 //