ID JN103433; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC JN103433; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:AL-Ata1:07 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2736 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 2fd9cfd1e627e3b41ce4c960fb5e107a. XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:AL-Ata1:07" FT /mol_type="genomic DNA" FT /country="Brazil:Atalaia, Alagoas" FT /collection_date="Oct-2007" FT /db_xref="taxon:666144" FT CDS 296..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2M2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2M2" FT /protein_id="AER09315.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09316.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09317.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2594) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2M5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2M5" FT /protein_id="AER09314.1" FT /translation="MPLPKPFRVNAKNYFLTYPKCSLSKEEALSQLQALATPTNKKFIK FT VARELHDDGEPHLHVLLQFEGKFQCKNIRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV FT DKDGDTLEWGTFQVDGRSARGGCQTANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAARIFQKAPEPWVPPFSLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDIKLIDDVAPHYLKLKHWKE FT LVGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNAR FT FVFLESPLYQSATQSGETESHSP" FT CDS complement(2180..2437) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8G2M6" FT /protein_id="AER09318.1" FT /translation="MGSLISTCFFSSRGNSSARISDSSTWYPRPGQHISIRTFRELSRA FT PTSSPTSTKTGILWNGEHSRSTAEVLEEVARRLTIHMPRR" XX SQ Sequence 2736 BP; 653 A; 634 C; 738 G; 711 T; 0 other; accggatggc cgcgtgatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 agatggaaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtcccaaaaa 120 aggaacgtat gatgggacca cataaagaca gtgattacgc ccaataagga ttgggcaaca 180 aagccaagat attcaaatat acttggccgc taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gttctgtggt gcagaatgcc 300 taagcgtgat gccccatggc gaacggtttc agggaccacg aaggttagcc gcaacgccaa 360 ctactcccct cgtggaggca cgggctcaag accaagcagg gccgctgctt gggttaatcg 420 gcccatgtac aggaagccca ggatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtctta cgagcagcgc cacgacatat ctcatgtcgg 540 caaggtgatg tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttgggaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacgcccatg gatttcggac aggtttttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatcttcgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctacttc tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt cttacatacg gtctgtccgt tgcgaaggtg acagcgcgaa ttacattgtt 1140 aaggctaata acgcccacgt tatttagata catgaggacc aaatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttgtacgt ggtagaccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgagttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatac 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg cactttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgctga gttttcctct 1620 ttctcgagga agtctttata gctggaccct tcccctggat tgcaaagcac gattgatggg 1680 ataccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgata 1800 agcttgatat cgatgacgtt gtatgcgacc tcgttcgagt agaccctcga gttgaagtcg 1860 aggtgtccac tgagataatt gtggggacct aaagcacgcg cccacatcgt cttccccgtc 1920 ctcgaatctc cctcgacgat cagacttatt ggtctgttcg gccgcgcttc tgcggataag 1980 gcgaaatact catcggccca cgactgcatc tcgtccggga cgttagtgaa cgacgagagt 2040 gaaaacggag ggacccacgg ttctggagcc ttctgaaaaa tgcgagcagc atttgctact 2100 aagttgtgat gttggaggaa gaagtgctgt ggttgctcct ctttaattat ttgcagggct 2160 tcttctgcag aagaagcgtt taacgccttg gcatatgtat cgttagccgt ctggcaacct 2220 cctctagcac ttctgccgtc gacctggaat gttccccatt ccagagtatc cccgtctttg 2280 tcgacgtagg acttgacgtc ggagctcgac ttagctccct gaatgttcgg atggaaatgt 2340 gctgaccggg acggggatac caggtcgaag aatctgatat tcttgcactg gaatttcccc 2400 tcgaactgaa gaagcacgtg gagatgaggc tccccatcgt cgtggagctc tctggcgacc 2460 ttgatgaact tcttgttcgt cggcgttgct agggcttgca attgggaaag tgcttcttct 2520 ttcgatagag agcactttgg ataggtaagg aaatagtttt tggcatttac tctgaaaggc 2580 ttggggagtg gcatatttgt aaatatgaat gaggcaccga ttggggtctc gctcaaagtg 2640 tgctatgcaa ttggtgtctg gtgtctcatt tatactagaa ccctcaatag atctttagat 2700 ctcgttcaca cacgtgtcgg ccatccgtat aatatt 2736 //