ID JN103432; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC JN103432; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:SE-Nps3:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2726 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2726 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 3e8c64b1aa0fbe28d6a5c37a1152ec63. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:SE-Nps3:09" FT /mol_type="genomic DNA" FT /country="Brazil:Neopolis, Sergipe" FT /collection_date="28-Nov-2009" FT /db_xref="taxon:666144" FT CDS 295..1050 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2L7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2L7" FT /protein_id="AER09310.1" FT /translation="MPKRDAPWRTLSGTTKVSRNGNYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1047..1445) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2L8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2L8" FT /protein_id="AER09311.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFFNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1192..1581) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:G8G2L9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G8G2L9" FT /protein_id="AER09312.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVLQLPSLDSIGDSFWADLFK" FT CDS complement(1502..2581) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2M0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2M0" FT /protein_id="AER09309.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQGATQSGETESHSP" FT CDS complement(2128..2421) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09313.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2726 BP; 652 A; 636 C; 739 G; 699 T; 0 other; accggatggc cgctgatctc ttttatgttc ggcccgcgca agcggaagag ttgggccgac 60 gatggcaaaa aactcggccc atgatgagag gagatgatag ggggaccacg tcccaaaaaa 120 ggaacatatg atgggaccac ataaagacag tgattacgcc caataaggat tgggcaacaa 180 agccaagata ttcaaatata cttggccgat aagttgataa agttatataa atgggaccat 240 cacccttcgt ggtctagtca gccccgaata ggactcgacg atctgtggtg cagaatgccc 300 aagcgtgatg ccccatggcg aacgctttca gggaccacga aggttagccg caacggcaac 360 tactcccctc gtggaggcac gggctcaaga ccaagcaggg ccgctgcttg ggttaatcgg 420 cccatgtaca ggaagcccag aatatatcgg atgtataggt cacccgatgt gcccagaggg 480 tgtgaaggcc cgtgcaaggt gcagtcttac gagcagcgcc acgacatatc tcatgtcggc 540 aaggtgatat gcgtgtctga cattacccgc ggtaatggta ttactcaccg cgttggtaag 600 cgattttgcg tcaagtctat gtacatccta ggcaaggtgt ggatggacga gaacatcaag 660 ttgaagaacc acacgaacac ggtgatgttg tggttagtta gggacaggag accttacggg 720 acggccatgg atttcggaca ggtttttaac ctgtttgaca acgagccaag caccgctacg 780 gtgaagaacg atctccgtga tcgttttcag gtgctgaaca ggttccacgt gaaggtcact 840 ggtggacagt acgcgagcaa cgagcaggcg ctggttaggc gcttttggag ggtgaacacc 900 cacgtgacgt ataaccacca ggaggcggcg aagtacgaga accatacgga gaacgccctg 960 ttattgtata tggcatgtac tcatgcctct aaccctgtat acgcgacgct caagattcga 1020 atctatttct acgattcgat attgaattaa taaagtttga attgtattga atggttctcg 1080 cgtacacgtc ttacatacgg tctgtccgtt gcgaaggtga cagctcgaat tacattgtta 1140 aggctaataa cgcccacgtt atttagatac atgaggacca aatgtttaaa cctatttaaa 1200 taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgaa gaacgccttg 1260 tggagatcca acgctttcct caggttgtgg ttgaaccgga tttgtacgtg gtagaccctc 1320 gtcgttctgg acaggatctc caccgcgtcg tatatcttga aatacagggg atttgttatc 1380 tcccatgtat acacgccatt ctccgcttga ggcgcagtga tgagttcccc tgtgcgtgaa 1440 tccattattc gcgcagttta ggtggatgta tattgtacat ccacagttca ggtcgatacg 1500 tctacggcga atggctctcc gtttcgccac tctgtgttgc accttgatag aggggagatt 1560 cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg gagtgctgag ttttcctctt 1620 tctcgaggaa gtctttatag ctggaccctt caccaggatt gcaaagcacg attgatggga 1680 taccgccttt aatttgaacg ggtttcccgt atttgcagtt actttgccag tctcgttggg 1740 ccccaacgag ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga 1800 cgttgtatgc gacctcgttt gagtagaccc tcgagttgaa gtcgaggtgt ccactgagat 1860 aattgtgggg acctaaagca cgcgcccaca tcgtcttccc cgtcctcgaa tctccttcga 1920 cgatcagact tatcggtctg tttggccgcg cttcggcgga taaggcgaaa tactcatcgg 1980 cccacgactg catttcgtcc ggaacgttag tgaatgagga caacgggaac ggagggaccc 2040 atggttccgg agccttagcg aagattttct ggacatgtgc ttgcaccttg tctaaatgga 2100 ggacgaaatc ccgcggttgc tcttccctta gaatctgcag tgcttgcgct gcagactcgg 2160 cgttaaggac tttggcgtat gtgtcgttag ccgattggca accgcctcta gcacttctcc 2220 cgtcgatctg gaatgttccc cattccagag tatccccgtc tttgtcgacg taggacttga 2280 cgtcggagct cgacttagct ccctgtacgt tcggatggaa atgtgctgac cgggacgggg 2340 ataccaggtc gaagaatctt tgattctggc atttgaactt cccctcgaat tggagaagca 2400 cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg aacttcttgt 2460 tcgtcggcgt tgctagagct tgcaattggg aaagtgcttc ctctttggtc agggagcact 2520 ttggataagt gaggaaataa tttctggcgt ttattaggaa acgctttggc gccgatggca 2580 ttttggtaaa taaagggatg agacccaata gagaggaccc gatagctctc gtttcaactt 2640 ggtgaaatga atcggggaat gggtccttat ttatagcaga gtccgttagg gtatatttgc 2700 cacgtgtcgg ccatccgtat aatatt 2726 //