ID JN103431; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC JN103431; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:SE-Nps2:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2726 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2726 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; a699cbbc0dafe798b9a8c48f5743a4d5. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:SE-Nps2:09" FT /mol_type="genomic DNA" FT /country="Brazil:Neopolis, Sergipe" FT /collection_date="28-Nov-2009" FT /db_xref="taxon:666144" FT CDS 308..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2L2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2L2" FT /protein_id="AER09305.1" FT /translation="MPHGERFQGPRRLAATPTTPLVEARAQDQAGPLLGLIGPMYRKPR FT IYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRFCVKS FT MYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATVKNDL FT RDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENALLLYM FT ACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2L3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2L3" FT /protein_id="AER09306.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAFTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:G8G2L4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G8G2L4" FT /protein_id="AER09307.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGIPRPNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2582) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2L5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2L5" FT /protein_id="AER09304.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALSTPTTKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQAWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQGATQSGETESHSP" FT CDS complement(2129..2422) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09308.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2726 BP; 650 A; 636 C; 740 G; 699 T; 1 other; accggatggc cgcttgatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatgacaaa aaactcggcc catgatgaga ggagatgata aggggaccac gtcccaaaaa 120 ggaacatatg atgggaccac ataaagacag tgattacgcc caataaggat tgggcaacaa 180 agccaagata ttcaaatata cttggccgat aagttgataa agttgtataa atgggaccat 240 cacccttcgt ggtctagtca gccccgaata ggactcgacg ttctgtggtg cagaatgcct 300 aagcgtgatg ccccatggcg aacggtttca gggaccacga aggttagccg caacgccmac 360 tactcccctc gtggaggcac gggctcaaga ccaagcaggg ccgctgcttg ggttaatcgg 420 ccccatgtat aggaagccca gaatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtcata cgagcagcgc cacgacatat cccacaccgg 540 caaggtgata tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacggccatg gatttcggac aggtttttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatcttcgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctatttc tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt cttacatacg gtctgtccgt tgcgaaggtg aacgcgcgaa ttacattgtt 1140 aaggctaata acgcccacgt tatttagata catgaggacc aaatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttggacgt ggtataccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgagttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatac 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg caccttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgctga gttttcctct 1620 ttctcgagga agtctttata gctggaccct tcaccaggat tgcaaagcac gattgatggg 1680 ataccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gttctttcca gtgctttagc tttaggtagt gtggggcaac gtcatcgatg 1800 acgttgtatg cgacctcgtt tgagtagacc ctcgagttga agtcgaggtg tccactgaga 1860 taattgtggg gacctaaagc acgcgcccac atcgtcttcc ccgtcctcga atctccttcg 1920 acgatcagac ttatcggtct gtttggccgc gcttcggcgg ataaggcgaa atactcatcg 1980 gcccacgcct gcatttcgtc cggaacgtta gtgaatgagg acaacgggaa cggagggacc 2040 catggttccg gagccttagc gaagattttc tggacatgtg cttgcacctt gtctaaatgg 2100 aggacgaaat cccgcggttg ctcttccctt agaatctgca gtgcttgcgc tgcagactcg 2160 gcgttaagga ctttggcgta tgtgtcgtta gccgattggc aaccgcctct agcacttctc 2220 ccgtcgatct ggaatgttcc ccattccaga gtatccccgt ctttgtcgac gtaggacttg 2280 acgtcggagc tcgacttagc tccctgtacg ttcggatgga aatgtgctga ccgggacggg 2340 gataccaggt cgaagaatct ttgattctgg catttgaact tcccctcgaa ttggagaagc 2400 acgtggagat gaggctcccc attatcgtgg agctctctgg cgaccttgat gaacttcttg 2460 gtcgtcggcg ttgatagggc ttgcaattgg gaaagtgctt cctctttggt cagggagcac 2520 tttggataag tgaggaaata atttctggcg tttattagga aacgctttgg cgccgatggc 2580 attttggtaa ataaaggatg agacccaata gagaggaccc gatagctctc gtttcaactt 2640 ggtgaaatga atcggggaat gggtccttat ttatagcaga gtccgttagg gtatatttgc 2700 cacgtgtcgg ccatccgtat aatatt 2726 //