ID JN103429; SV 1; circular; genomic DNA; STD; VRL; 2726 BP. XX AC JN103429; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:SE-Nps1:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2726 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2726 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 0e3ca1341ac559f6e18960d934e9d7e7. XX FH Key Location/Qualifiers FH FT source 1..2726 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:SE-Nps1:09" FT /mol_type="genomic DNA" FT /country="Brazil:Neopolis, Sergipe" FT /collection_date="17-Nov-2009" FT /db_xref="taxon:666144" FT CDS 294..992 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2K2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2K2" FT /protein_id="AER09295.1" FT /translation="MPKRDAPWRTVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHTGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENPYGERP FT VIVYGMYSCL" FT CDS complement(1047..1445) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09296.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1192..1581) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09297.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1502..2581) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2K5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2K5" FT /protein_id="AER09294.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKLFAKTPEPWVPPFPLSSFTNVPDEMQAWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPAIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQGATQSGETESHSP" FT CDS complement(2128..2421) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09298.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2726 BP; 643 A; 636 C; 749 G; 697 T; 1 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatggcaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtcccaaaaa 120 ggaacgtatg atgggaccac ataaagatag tgattacgcc caataaggat tgggcancaa 180 agccaagata tttaaatata cttggccgat aagttgataa agttgtataa atgggaccat 240 cacccttcgt ggtctagtca gccccgaata ggactcgacg tctgtggtgc agaatgccca 300 agcgtgatgc cccatggcga acggtttcag ggaccacgaa ggttagccgc aacgccaact 360 actcccctcg tggaggcacg ggctcaagac caagcagggc cgctgcttgg gttaatcggc 420 ccatgtacag gaagcccagg atatatcgga tgtataggtc acccgatgtg cccagagggt 480 gtgaaggccc gtgcaaggtg cagtcttacg agcagcgcca cgatatatcc cacaccggga 540 aggtgatatg cgtgtctgac attacccgcg gtaatggtat tactcaccgc gttggtaagc 600 gattttgcgt caagtctatg tacatcctag gcaaggtctg gatggacgag aacatcaagt 660 tgaagaacca cacgaacacg gtgatgttgt ggttagttag ggacaggaga ccttacggga 720 cggccatgga tttcggacag gtttttaacc tgtttgacaa cgagccaagc accgctacgg 780 tgaagaacga tctccgtgat cgttttcagg tgctgaacag gttccacgtg aaggtcactg 840 gtggacagta cgcgagcaac gagcaggcgc tggttaggcg cttttggagg gtgaacaccc 900 acgtgacgta taaccaccag gaggcggcga agtacgagaa cccatacgga gaacgccctg 960 ttattgtata tggcatgtac tcatgcctct aaccctgtat acgcgacgct caagattcga 1020 atctatttct acgattcgat attgaattaa taaagtttga attgtattga atggttctcg 1080 cgtacacgtc ttacatacgg tctgtccgtt gcgaaggtga cagcgcgaat tacattgtta 1140 aggctaataa cgcccacgtt attaagatac atgaggacca aatgtttaaa cctatttaaa 1200 taggtctgcc cagaagctgt caccgatact gtccagactt ggaagttgag gaacgccttg 1260 tggagatcca acgctttcct caggttgtgg ttgaaccgga tttgtacgtg gtagaccctc 1320 gtcgttctgg acaggatctc caccgcgtcg tatatcttga aatacagggg atttgttatc 1380 tcccatgtat acacgccatt ctccgcttga ggcgcagtga tgagttcccc tgtgcgtgaa 1440 tccattattc gcgcagttta ggtggatgta tattgtacat ccacagttca ggtcgatacg 1500 tctacggcga atggctctcc gtttcgccac tctgtgttgc accttgatag aggggagatt 1560 cgaggaagac gaacctcgca ttgtgaaggg tccacgaccg gagtgctgag ttttcctctt 1620 tctcgaggaa gtctttatag ctggaccctt caccaggatt gcaaagcacg attgctggga 1680 taccgccttt aatttgaacg ggtttcccgt atttgcagtt actttgccag tctcgttggg 1740 ccccaacgag ttctttccag tgctttagct ttaggtagtg cggggcaacg tcatcgatga 1800 cgttgtatgc gacctcgttt gagtagaccc tcgagttgaa gtcgaggtgt ccactgagat 1860 aattgtgggg acctaaagca cgcgcccaca tcgtcttccc cgtcctcgaa tctccttcga 1920 cgatcagact tatcggtctg tttggccgcg cttcggcgga taaggcgaaa tactcatcgg 1980 cccacgcctg catttcgtcc ggaacgttag tgaatgagga caacgggaac ggagggaccc 2040 atggttccgg agtcttagcg aagagtttct ggacatgtgc ttgcaccttg tctaaatgga 2100 ggacgaaatc ccgcggttgc tcttccctta gaatctgcag tgcttgcgct gcagactcgg 2160 cgttaaggac tttggcgtat gtgtcgttag ccgattggca accgcctcta gcacttctcc 2220 cgtcgatctg gaatgttccc cattccagag tatccccgtc tttgtcgacg taggacttga 2280 cgtcggagct cgacttagct ccctgtacgt tcggatggaa atgtgctgac cgggacgggg 2340 ataccaggtc gaagaatctt tgattctggc atttgaactt cccctcgaat tggagaagca 2400 cgtggagatg aggctcccca ttatcgtgga gctctctggc gaccttgatg aacttcttgt 2460 tggtcggcgt tgctagggct tgcaattggg aaagtgcttc ctctttggtc agggagcact 2520 ttggataagt gaggaaataa tttctggcgt ttattaggaa acgctttggc gccgatggca 2580 ttttggtaaa taaaggggtg agacccaata gagaggaccc gatagctctc gtttcaactt 2640 gggtaaatga atcggggaat gggtccttat ttatagcaga gtccgttagg gtatatttgc 2700 cacgtgtcgg ccatccgtat aatatt 2726 //