ID JN103428; SV 1; circular; genomic DNA; STD; VRL; 2727 BP. XX AC JN103428; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:SE-Ind1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2727 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2727 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; ea3cf07152fd111f56345ffd4b1a3b47. XX FH Key Location/Qualifiers FH FT source 1..2727 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:SE-Ind1:10" FT /mol_type="genomic DNA" FT /country="Brazil:Indiaroba, Sergipe" FT /collection_date="02-Jan-2010" FT /db_xref="taxon:666144" FT CDS 296..1051 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2J7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2J7" FT /protein_id="AER09290.1" FT /translation="MPKRDAPWRTLSGTTKVSRNANYSPRGGTGTRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVICVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTAMDFGQVFNLFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(1048..1446) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J8" FT /protein_id="AER09291.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVKRVRENHSIQFKLY" FT CDS complement(1193..1582) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09292.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1503..2582) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2M0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2M0" FT /protein_id="AER09289.1" FT /translation="MPSAPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKVLNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDDVAPHYLKLKHWKELVGA FT QRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFVFL FT ESPLYQGATQSGETESHSP" FT CDS complement(2129..2422) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q7" FT /protein_id="AER09293.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTGEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2727 BP; 647 A; 636 C; 745 G; 699 T; 0 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatggcaaa aaactcggcc catgatgaga ggagatgata gggggaccac gtcccaaaaa 120 aggaacgtat gatgggacca cataaagaca ctgattacgc ccaataagga ttgggcaaca 180 aagccaagat attcaaatat acttggccga taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gatctgtggt gcagaatgcc 300 caagcgtgat gccccatggc gaacgctttc agggaccacg aaggttagcc gcaacgccaa 360 ctactcccct cgtggaggca cgggcacaag accaagcagg gccgctgctt gggttaatcg 420 gcccatgtac aggaagccca gaatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtctta cgagcagcgc cacgacatat ctcatgtcgg 540 caaggtgata tgcgtgtcag acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacggccatg gatttcggac aggtttttaa cctgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatctccgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aaccatacgg agaacgccct 960 gttattgtat atggcatgta ctcatgcctc taaccctgta tacgcgacgc tcaagattcg 1020 aatctatttc tacgattcga tattgaatta ataaagtttg aattgtattg aatggttctc 1080 gcgtacacgt tttacatacg gtctgtccgt tgcgaaggtg acagcgcgaa ttacattgtt 1140 aaggctaata acgcccacgt tatttagata catgaggacc agatgtttaa acctatttaa 1200 ataggtctgc ccagaagctg tcaccgatac tgtccagact tggaagttga ggaacgcctt 1260 gtggagatcc aacgctttcc tcaggttgtg gttgaaccgg atttgtacgt ggtagaccct 1320 cgtcgttctg gacaggatct ccaccgcgtc gtatatcttg aaatacaggg gatttgttat 1380 ctcccatgta tacacgccat tctccgcttg aggcgcagtg atgagttccc ctgtgcgtga 1440 atccattatt cgcgcagttt aggtggatgt atattgtaca tccacagttc aggtcgatac 1500 gtctacggcg aatggctctc cgtttcgcca ctctgtgttg caccttgata gaggggagat 1560 tcgaggaaga cgaacctcgc attgtgaagg gtccacgacc ggagtgctga gttttcctct 1620 ttctcgagga agtctttata gctggaccct tcaccaggat tgcaaagcac gattgatggg 1680 attccgcctt taatttgaac gggtttcccg tatttgcagt tactttgcca gtctcgttgg 1740 gccccaacga gttctttcca gtgctttagc tttaggtagt gcggggcaac gtcatcgatg 1800 acgttgtatg cgacctcgtt tgagtagacc ctcgagttga agtcgaggtg tccactgaga 1860 taattgtggg gacctaaagc acgcgcccac atcgtcttcc ctgtcctcga atctccttcg 1920 acgatcagac ttatcggtct gtttggccgc gcttcggcgg ataaggcgaa atactcatcg 1980 gcccacgact gcatttcgtc cggaacgtta gtgaatgagg acaacgggaa cggagggacc 2040 catggttccg gagccttagc gaagattttc tggacatgtg cttgcacctt gtctaaatgg 2100 aggacgaaat cccgcggttg ctcttccctt agaatctgca gtgcttgcgc tgcagactcg 2160 gcgttaagga ctttggcgta tgtgtcgtta gccgattggc aaccgcctct agcacttctc 2220 ccgtcgatct ggaatgttcc ccattccaga gtatccccgt ctttgtcgac gtaggacttg 2280 acgtcggagc tcgacttagc tccctgtacg ttcggatgga aatgtgctga ccgggacggg 2340 gataccaggt cgaagaatct ttgattctgg catttgaact tcccctcgaa ttggagaagc 2400 acgtggagat gaggctcccc attatcgtgg agctctctgg cgaccttgat gaacttcttg 2460 ttcgtcggcg ttgctagggc ttgcaattgg gaaagtgctt cctctttggt cagggagcac 2520 tttggataag tgaggaaata atttctggcg tttattagga aacgctttgg cgccgatggc 2580 attttggtaa ataaggggat gagacccaat agagaggacc cgatagctct cgtttcaact 2640 tggtgaaatg aatcggggaa tgggtcctta tttatagcag agtccgttag ggtatatttg 2700 ccacgtgtcg gccatccgta taatatt 2727 //