ID JN103427; SV 1; circular; genomic DNA; STD; VRL; 2734 BP. XX AC JN103427; XX DT 26-OCT-2011 (Rel. 110, Created) DT 07-DEC-2011 (Rel. 111, Last updated, Version 2) XX DE Cleome leaf crumple virus isolate BR:AL-Par1:09 segment DNA-A, complete DE sequence. XX KW . XX OS Cleome leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2734 RX PUBMED; 22006043. RA da Silva S.J., Castillo-Urquiza G.P., Hora Junior B.T., Assuncao I.P., RA Lima G.S., Pio-Ribeiro G., Mizubuti E.S., Zerbini F.M.; RT "High genetic variability and recombination in a begomovirus population RT infecting the ubiquitous weed Cleome affinis in northeastern Brazil"; RL Arch. Virol. 156(12):2205-2213(2011). XX RN [2] RP 1-2734 RA da Silva S.J.C., Castillo-Urquiza G.P., Hora-Junior B.T., Assuncao I.P., RA Lima G.S.A., Pio-Ribeiro G., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (09-JUN-2011) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 4c913fe30e615cf6de9cd1977333e851. XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Cleome leaf crumple virus" FT /segment="DNA-A" FT /host="Cleome affinis" FT /isolate="BR:AL-Par1:09" FT /mol_type="genomic DNA" FT /country="Brazil:Paripueira, Alagoas" FT /collection_date="22-Dec-2009" FT /db_xref="taxon:666144" FT CDS 296..994 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:G8G2J2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:G8G2J2" FT /protein_id="AER09285.1" FT /translation="MPKRDAPWRAVSGTTKVSRNANYSPRGGTGSRPSRAAAWVNRPMY FT RKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDITRGNGITHRVGKRF FT CVKSMYILGKVWMDENIKLKNHTNTVMLWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVLNRFHVKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENPYGERP FT VIVYGMYSCL" FT CDS complement(1049..1447) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:G8G2J3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G8G2J3" FT /protein_id="AER09286.1" FT /translation="MDSRTGELITAPQAENGVYTWEITNPLYFKIYDAVEILSRTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTVSVTASGQTYLNRFKHLVLMYLNNVGVISLNN FT VIRAVTFATDRPYVRRVRENHSIQFKLY" FT CDS complement(1194..1583) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:E0Z5Q5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E0Z5Q5" FT /protein_id="AER09287.1" FT /translation="MRGSSSSNLPSIKVQHRVAKRRAIRRRRIDLNCGCTIYIHLNCAN FT NGFTHRGTHHCASSGEWRVYMGDNKSPVFQDIRRGGDPVQNDEGLPRTNPVQPQPEESV FT GSPQGVPQLPSLDSIGDSFWADLFK" FT CDS complement(1504..2589) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:G8G2J5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G8G2J5" FT /protein_id="AER09284.1" FT /translation="MPSTPKRFLINARNYFLTYPKCSLTKEEALSQLQALATPTNKKFI FT KVARELHDNGEPHLHVLLQFEGKFKCQNQRFFDLVSPSRSAHFHPNVQGAKSSSDVKSY FT VDKDGDTLEWGTFQIDGRSARGGCQSANDTYAKILNAESAAQALQILREEQPRDFVLHL FT DKVQAHVQKIFAKAPEPWVPPFPLSSFTNVPDEMQSWADEYFALSAEARPNRPISLIVE FT GDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVAYNVIDIDDVAPHYLKLKHWKELV FT GAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKEENSALRSWTLHNARFV FT FLESPLYQSATQSGETESHSP" FT CDS complement(2136..2429) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G8G2J6" FT /protein_id="AER09288.1" FT /translation="MGSLISTCFSNSRGSSNARIKDSSTWYPRPGQHISIRTYRELSRA FT PTSSPTSTKTGILWNGEHSRSTEEVLEAVANRLTTHTPKSLTPSLQRKHCRF" XX SQ Sequence 2734 BP; 647 A; 634 C; 745 G; 708 T; 0 other; accggatggc cgctggatct gttttatgtt cggcccgcgc aagcggaaga gttgggccga 60 cgatggcaaa aaactcggcc catgatgaga gtagatgata gggggaccac gtcccaaaaa 120 aggaacgtat gatgggacca cataaagaca gtgatgacgc ccaataagga ttgggcaaca 180 aagccaagat attcaaatat acttggccga taagttgata aagttgtata aatgggacca 240 tcacccttcg tggtctagtc agccccgaat aggactcgac gttctgtggt gcagaatgcc 300 caagcgtgat gccccatggc gagcggtttc agggaccacg aaggttagtc gcaacgccaa 360 ctactcccct cgtggaggca cgggctcaag accaagcagg gccgctgctt gggttaatcg 420 gcccatgtac aggaagccca ggatatatcg gatgtatagg tcacccgatg tgcccagagg 480 gtgtgaaggc ccgtgcaagg tgcagtctta cgagcagcgc cacgacatat ctcatgtcgg 540 caaggtgatg tgcgtgtctg acattacccg cggtaatggt attactcacc gcgttggtaa 600 gcgattttgc gtcaagtcta tgtacatcct aggcaaggtc tggatggacg agaacatcaa 660 gttgaagaac cacacgaaca cggtgatgtt gtggttagtt agggacagga gaccttacgg 720 gacgcccatg gatttcggac aggtttttaa catgtttgac aacgagccaa gcaccgctac 780 ggtgaagaac gatcttcgtg atcgttttca ggtgctgaac aggttccacg tgaaggtcac 840 tggtggacag tacgcgagca acgagcaggc gctggttagg cgcttttgga gggtgaacac 900 ccacgtgacg tataaccacc aggaggcggc gaagtacgag aacccatacg gagaacgccc 960 tgttattgta tatggcatgt actcatgcct ctaaccctgt atacgcgacg ctcaagattc 1020 gaatctattt ctacgattcg atattgaatt aataaagttt gaattgtatt gaatggttct 1080 cgcgtacacg tcttacatac ggtctgtccg ttgcgaaggt gacagcgcga attacattgt 1140 taaggctaat aacgcccacg ttatttagat acatgaggac caaatgttta aacctattta 1200 aataggtctg cccagaagct gtcaccgata ctgtccagac ttggaagttg aggaacgcct 1260 tgtggagatc caacgctttc ctcaggttgt ggttgaaccg gatttgtacg tggtagaccc 1320 tcgtcgttct ggacaggatc tccaccgcgt cgtatatctt gaaatacagg ggatttgtta 1380 tctcccatgt atacacgcca ttctccgctt gaggcgcagt gatgagttcc cctgtgcgtg 1440 aatccattat tcgcgcagtt taggtggatg tatattgtac atccacagtt caggtcgata 1500 cgtctacggc gaatggctct ccgtttcgcc actctgtgtt gcactttgat agaggggaga 1560 ttcgaggaag acgaacctcg cattgtgaag ggtccacgac cggagtgctg agttttcctc 1620 tttctcgagg aagtctttat agctggaccc ttcacctgga ttgcaaagca cgattgatgg 1680 gataccgcct ttaatttgaa cgggtttccc gtatttgcag ttactttgcc agtctcgttg 1740 ggccccaacg agttctttcc agtgctttag ctttaggtag tgcggggcaa cgtcatcgat 1800 atcgatgacg ttgtatgcga cctcgtttga gtagaccctc gagttgaaat cgaggtgtcc 1860 actgagataa ttgtggggac ctaaagcacg cgcccacatc gtcttccccg tcctcgaatc 1920 tccctcgacg atcagactta tcggtctgtt tggccgcgct tccgcggata aggcgaaata 1980 ctcatcggcc cacgactgca tttcgtccgg aacgttagtg aatgaggaca acgggaacgg 2040 agggacccat ggttccggag ccttagcgaa gattttctgg acatgtgctt gcaccttgtc 2100 taaatggagg acgaaatccc gcggttgctc ttcccttaga atctgcagtg cttgcgctgc 2160 agactcggcg ttaaggattt tggcgtatgt gtcgttagcc gattggcaac cgcctctagc 2220 acttcttccg tcgatctgga atgttcccca ttccagagta tccccgtctt tgtcgacgta 2280 ggacttgacg tcggagctcg acttagctcc ctgtacgttc ggatggaaat gtgctgaccg 2340 ggacggggat accaggtcga agaatctttg attctggcat ttgaacttcc cctcgaattg 2400 gagaagcacg tggagatgag gctccccatt atcgtggagc tctctggcga ccttgatgaa 2460 cttcttgttc gtcggcgttg ctagggcttg caattgggaa agtgcttcct ctttggtcag 2520 ggagcacttt ggataagtta ggaaataatt tctggcgttt attaggaaac gctttggcgt 2580 cgatggcatt ttggtaaata aagggatgag acccaataga gaggacccga tagctctcgt 2640 ttcaacttgg tgaaatgaat cggggaatgg gtccttattt atagcagagt ccgttagggt 2700 atatttgcca cgtgtcggcc atccgtataa tatt 2734 //