ID JN054637; SV 1; linear; genomic RNA; STD; VRL; 3045 BP. XX AC JN054637; XX DT 02-NOV-2011 (Rel. 110, Created) DT 02-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Cucumber mosaic virus strain CLW2 RNA-dependent RNA polymerase and 2b DE protein genes, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3045 RA Lee W.W., Roff M., Othman R.Y.; RT "Genomic analysis of Cucumber mosaic virus strain CLW2 from Malaysia RT suggests a subgroup IB virus with a unique deletion in the RT methyltransferase domain of the 1a replicase protein that does not affect RT replication"; RL Unpublished. XX RN [2] RP 1-3045 RA Lee W.W., Roff M., Othman R.Y.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Centre for Research in Biological for Agriculture (CEBAR), University of RL Malaya, Level 5, Block B, Institute of Postgraduate Studies Building, Kuala RL Lumpur, Kuala Lumpur 50603, Malaysia XX DR MD5; edd1459e7012ab1fd74b5839fdbeffaf. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3045 FT /organism="Cucumber mosaic virus" FT /host="cucumber" FT /strain="CLW2" FT /mol_type="genomic RNA" FT /country="Malaysia" FT /note="acronym: CMV" FT /db_xref="taxon:12305" FT CDS 77..2653 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="2a" FT /db_xref="GOA:G8FVJ7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:G8FVJ7" FT /protein_id="AER35121.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEEVERVRSEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPSEEVSDEFVSYGAEDYLEKSDDELLVAFETMVKP FT MRVGQLWCPAFNKCLFISSIAMARALPLAPRTSTRTMKCFEDLVAAIYTKSDFYYGDEC FT EADDVQIDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVIDNATLLSNLGPFLTPVRCRYEKCPTPTVANPPNLNRATDRVDIN FT LVQSICDSTLPTHNNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMARFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREIQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALILGAFKKYTANFQSYKELYYSDRRQC FT ELINSFSCVELRTERSISTKQRKKKDGIERRCNDKRRTPAGSYDGGEETKTKVSQEEST FT GTRSQKSQRESAFKSQTVPIFTVLSNRWFGTDRDVPPRECGGIVRV" FT CDS 2412..2747 FT /codon_start=1 FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:G8FVJ8" FT /protein_id="AER35122.1" FT /translation="MELNEGAMTNVELQLAHMMEVRRQRRKSHKKNRRERGHKSPSERA FT RSNLRLFRFLPFYQIDGSELIEMYHHASVVELSESEAPRFTLPAEEDHDFDDTDWFAGN FT EWAEGAF" XX SQ Sequence 3045 BP; 781 A; 681 C; 702 G; 881 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcctc tgtaaaactc caaacttctc 60 agttttctat ctttctatgg ctttccctgc ccccgctttc tcgctagcca atcttttgaa 120 cggcagctac ggtgtcgaca ctcccgagga agtggaacgc gtgcgatctg agcaacgcga 180 agaggctgct gcggcctgcc gtaactacag gcccctaccc gctgtggatg tcagcgagag 240 tgtcacagag gatgcgcatt ccctccgaac tccagacgga gctccctccg aagaggtgtc 300 tgatgagttc gtctcttatg gtgctgaaga ttaccttgaa aaatctgatg atgagctcct 360 tgtcgctttt gagacgatgg tcaaacccat gcgtgtcggt caactatggt gccctgcgtt 420 taataaatgt ctatttattt ccagcattgc tatggccaga gctttgccgt tggcgcctag 480 aacatccacc cgaaccatga agtgttttga agacctggtc gcggctattt acactaaatc 540 cgatttctac tacggtgatg agtgtgaagc cgacgacgtt cagatagata tctcgtctcg 600 cgacgtaccc ggttattctt tcgaaccgtg gtcccgaacg tctggatttg aaccaccgcc 660 tatttgtgag gcgtgtgaca tgatcatgta ccagtgccca tgttttgatt tcaatgcttt 720 aaagaaatcg tgcgctgaga ggactttcgc cgacgattat gttatcgaag gtttagatgg 780 tgttatcgac aatgcaaccc tgttatctaa tttgggacca tttttgacac ccgtgagatg 840 tcgatatgag aaatgtccaa cacccaccgt cgcgaatcct ccgaatttga atcgtgctac 900 tgatcgtgtt gatattaatt tagttcaatc catttgtgac tcgactctgc ccactcataa 960 caactacgac gactcttttc atcaagtgtt tgtcgagagt gctgattatt ctattgatct 1020 ggatcatgta agacttcgac agtctgatct catcgcgaaa attccagatt cagggcatat 1080 gataccggtt ttgaacaccg ggagcggtca caagagagta ggtacaacga aggaggtcct 1140 tacagcaatc aagaaacgta atgctgacgt tccagagcta ggtgattccg ttaatctgtc 1200 caggttgagt aaggctgtgg ctgagaggtt tttcatttcg tatattaacg gcaactctct 1260 agcatccagc aactttgtta atgtcgttag taacttccac gattacatgg aaaaatggaa 1320 gtcctcgggt ctttcgtatg atgatcttcc tgatctccat gctgaaaatc tacaatttta 1380 tgatcatatg ataaaatctg atgtgaaacc cgtagtgagc gacacactca acatcgacag 1440 accggttcca gctacaataa cgtatcataa gaaaggtata acctcccagt tctcaccgtt 1500 attcacagcg ctattcgagc gcttccagag atgccttcga gaacgtatta ttcttcctgt 1560 tggaaagatt tcatctcttg agatggcgag attcgatgtt aagaataaac attgtctcga 1620 gattgatttg tctaaatttg acaagtctca aggtgaattt catttgatga ttcaggaaca 1680 tattttgaat ggtctaggat gcccagctcc gataactaaa tggtggtgtg atttccatcg 1740 attctcttac attagagacc gtagagctgg tgttggtatg cccatcagtt tccaaagacg 1800 aactggtgac gcgttcactt attttggtaa caccatagtc accatggctg aattcgcatg 1860 gtgttacgac accgaccaat tcgaaaagct tctgttctcg ggcgatgatt ctctaggatt 1920 ttcattactt ccccctgttg gtgatccgag taaattcaca actctattca acatggaagc 1980 taaggtgatg gaacctgcag taccatatat ttgttcgaag ttcttactct ctgacgagtt 2040 cggtaatact ttctccgttc cagatccatt gcgtgagatt cagcggttag gaacaaagaa 2100 gatcccctat tctgataatg atgaattcct atttgctcat ttcatgagct ttgtcgatcg 2160 attgaagttt ctggacagaa tgactcagtc ctgcatcgat caactttcac tctttttcga 2220 gttgaaatat aggaagtctg gggctgaggc tgctttaata ttaggcgcct tcaagaaata 2280 taccgctaat ttccaatcct ataaagaact ctactattca gatcgtcgtc agtgcgaatt 2340 gatcaattcg tttagttgtg tagagttgag gactgagcgt tcgatttcca ctaaacagcg 2400 aaagaagaaa gatggaattg aacgaaggtg caatgacaaa cgtcgaactc cagctggctc 2460 atatgatgga ggtgaggaga caaagacgaa agtctcacaa gaagaatcga cgggaacgag 2520 gtcacaaaag tcccagcgag agagcgcgtt caaatctcag actgttccga tttttaccgt 2580 tttatcaaat agatggttcg gaactgatag agatgtacca ccacgcgagt gtggtggaat 2640 tgtccgagtc tgaggctcct cggtttacgt taccagcgga agaagaccat gattttgacg 2700 acacagattg gttcgctggt aatgaatggg cggaaggtgc gttttgaatc tcccccttcc 2760 ttttctccct ccagttttct gaggcgggag ctgagttggc agtgctgcta taaactgtct 2820 gaagtcacta aacgctttgc ggtgaacggg ttgtccatcc agcttacggc taaaatggtc 2880 agtcgtggag agattcacgc cagtagactt acaagtctct gaggtgcctt tgaaaccatc 2940 tcctaggttt cttcggaagg acttcggtcc gtgtactttc agcacaagat gctgatttta 3000 gagtacgggc atcccccact tagtggggtc tctcaaagga gacca 3045 //