ID JN054636; SV 1; linear; genomic RNA; STD; VRL; 3349 BP. XX AC JN054636; XX DT 02-NOV-2011 (Rel. 110, Created) DT 02-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Cucumber mosaic virus strain CLW2 putative RNA helicase and DE methyltransferase gene, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3349 RA Lee W.W., Roff M., Othman R.Y.; RT "Genomic analysis of Cucumber mosaic virus strain CLW2 from Malaysia RT suggests a subgroup IB virus with a unique deletion in the RT methyltransferase domain of the 1a replicase protein that does not affect RT replication"; RL Unpublished. XX RN [2] RP 1-3349 RA Lee W.W., Roff M., Othman R.Y.; RT ; RL Submitted (03-JUN-2011) to the INSDC. RL Centre for Research in Biological for Agriculture (CEBAR), University of RL Malaya, Level 5, Block B, Institute of Postgraduate Studies Building, Kuala RL Lumpur, Kuala Lumpur 50603, Malaysia XX DR MD5; a35f37c8dd3bcdad12009fa495d5f538. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3349 FT /organism="Cucumber mosaic virus" FT /host="cucumber" FT /strain="CLW2" FT /mol_type="genomic RNA" FT /country="Malaysia" FT /note="acronym: CMV" FT /db_xref="taxon:12305" FT CDS 96..3068 FT /codon_start=1 FT /product="putative RNA helicase and methyltransferase" FT /note="1a" FT /db_xref="GOA:G8FVJ6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:G8FVJ6" FT /protein_id="AER35120.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLNVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCEVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTSLSGKIESTHVRKFKTMVAFDFINESTMSYVHSWE FT NIKSFMTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIKDYV FT GLKIPASSDLVKWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSSTIV FT INGMSMQSGERIDIEDYHYIGFAILLHTKMKYEQLGKMYDMWNASIIWKWFATLTRPLR FT VFFSGVVRVLFPTLRPREEKEFLIKLSTFVTFNGECSFDGGEEWDVISSAAFVAAQAVT FT DGKVLAAQKAEKLAEKLAQPVIEVSGSPETSSPTSDDTDDVCGKEREVSELDSLSVQTR FT SPVTRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKKNTLEGNLKFVFDTYF FT TVDPMVNVHFSTGRWMRPVPEGVVYSVGFNERGLGPKSEGELYIVNSECVVCNSESLSA FT ITRSLQAPTGTISQVDGVAGCGKTTAIKSIFDPTTDMIVTANKKSAQDVRMALFQSSDS FT KEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIA FT FSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTRWVSQ FT SKVKRSVTSRAVASVTLVDLDSSRFYVTMTQADKASLISRAKEMNLPKAFWSERIKTVH FT ESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLGGDLIAECIAR FT V" XX SQ Sequence 3349 BP; 837 A; 715 C; 825 G; 972 T; 0 other; gttttgttta caagagcgta cggttcaatc cctgcctcct ctgtaaaata accctttgaa 60 aacctctttc ttctaatctt ttctctgaaa ttcctatggc gacgtcctcg ttcaatatta 120 atgaattggt agcctcccac ggcgataaag gactgctcgc gaccgcccta gttgataaga 180 cagctcatga gcagctcgag gagcaattac aacatcaacg tcggggccgt aaggtctaca 240 ttcggaatgt tctgaatgta aaggattccg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggaccttg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgct 480 gttccccatg tttgggtatc cgcgataaaa tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc 600 atcctgctgc tgattgcgaa gtacaagccc acttcgctat atctattcat ggaggttatg 660 acatgggctt tagaggatta tgtgaagcaa tgaacgctca cggaaccact attttgaagg 720 gaacaatgat gttcgatggt gcgatgatgt ttgacgacca aggtgtaata cccgaactta 780 attgtcagtg gaggaagatt aggagtgctt tctccgaaac tgaagacgtc acgtctctgt 840 ctgggaaaat tgagtctacc cacgtgcgta agtttaagac tatggtagct tttgatttta 900 tcaatgaatc taccatgtct tacgttcatt cttgggagaa tataaaatcg tttatgacgg 960 accagacgta ctcgtataaa gggatgactt atggcatcga acgttgtgtc attaatgcgg 1020 gtattatgac gtacaagatt atcggtgtac ctgggatgtg tccacccgaa ctcattcgac 1080 attgcatttg gttcccctct attaaggact atgttggtct gaagattccc gcgtcgtctg 1140 acttggttaa gtggaaaaca gtgcgaattt taacgtcaac attacgtgag actgaagaga 1200 ttgctatgag gtgctataat gacaagaaag cttggatgga gcaatttaag gttatcttag 1260 gtgttctttc cgctaagtcc tctaccattg ttatcaatgg aatgtctatg caatctggcg 1320 aacgaataga tattgaagat tatcattaca taggattcgc cattcttctt cacacaaaaa 1380 tgaagtatga acaactggga aaaatgtatg atatgtggaa tgcctcgatt atttggaagt 1440 ggttcgcaac gttgactcgt ccgctgcgcg tgtttttctc tggtgttgtt cgcgtgctgt 1500 tcccgacttt gagaccccgc gaggaaaaag aattcctgat taagctctcc acttttgtta 1560 cttttaatgg agagtgctca tttgatggtg gagaggaatg ggacgtgata tcatctgctg 1620 catttgttgc cgcgcaggct gttaccgatg ggaaagtttt ggctgcgcag aaagccgaga 1680 agctcgctga gaagcttgca caacccgtga ttgaggtatc gggcagtcct gagacgtcat 1740 ctccaacgtc tgatgatact gatgatgttt gtggaaagga gcgagaggtt tcggaactcg 1800 actccttgtc agttcagaca cgttcccccg tcactagagt cgctgaaagg gctactgcta 1860 tgttagagta tgccgcttat gagaaacagt tacatgacac cacggtgtct aatttgaaac 1920 gcatttggaa catggcgggt ggtgatgata agaaaaacac ccttgagggt aatctgaaat 1980 ttgtcttcga tacgtatttc actgtcgacc ctatggtgaa tgttcatttt tccacgggtc 2040 ggtggatgcg tccagtaccg gagggagttg tttattctgt tggtttcaat gaacgtggtt 2100 taggcccgaa atctgaaggg gagctttata tcgtcaatag tgagtgtgtg gtttgcaaca 2160 gtgaatctct gtctgctatc acacgctcgt tacaggctcc gactggaacc atcagtcaag 2220 tcgatggggt cgctggttgt gggaaaacta cagcaattaa atctatattt gatccgacca 2280 ccgacatgat cgtcactgca aacaagaaat ccgcccaaga tgtgcgtatg gcacttttcc 2340 aatcgtcgga ctccaaagaa gcctgcactt tcgtccgaac agctgactct gtcttgctta 2400 atgaatgtcc gactgttagc agagttctgg ttgatgaggt tgtgctgctt cattttggtc 2460 agttatgtgc cgttatgtca aaattgaagg ccgtgcgagc catatgtttt ggggattcgg 2520 agcaaattgc tttttcctct cgagatgcct cttttgacat gcgtttctct aagattattc 2580 ctgatgagac tagtgatgcg gacactacat tccgtagccc acaagatgtc gtgccgcttg 2640 tgcgtttgat ggctacgaag gcccttccga aaggaactca ttcgaaatat accagatggg 2700 tttctcaatc taaagtgaag agatctgtta catctcgtgc tgtcgcaagt gtgactctgg 2760 ttgacctaga ctcttctagg ttttatgtca cgatgacaca agctgataaa gcttcactga 2820 tttccagggc gaaagagatg aacttaccaa aagctttttg gagcgaaaga attaaaactg 2880 tgcatgagtc ccaaggtatc tctgaggacc atgttacttt ggtaagattg aagagcacaa 2940 aatgtgacct gttcaaaaaa ttttcttatt gtcttgtcgc tttgactaga cacaaggtca 3000 ctttccgcta cgagtattgc ggtgtgttag gtggcgactt aatcgcagaa tgtattgctc 3060 gtgtttagcg gtgtccctcc ttcgggcggg atctgagttg gcggtaatct acaaaccgtc 3120 tgaagtcact aaaagctttg cggtgaacgg gttgtccatc cagctaacgg ctaaaatggt 3180 cagtcgtgga gaaatctgcg ccagtagact tacaagtctc tgaggtgcct ttgaaaccat 3240 ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc caacacaaga tgttggtctt 3300 agggtacggg caccccccac ttttgtgggg ttctctttaa aggagacca 3349 //